Rainer Breitling

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Topics

Escherichia Coli

Convolutional Neural Network

Machine Learning

Top Venues

ACS synthetic biology

Molecular omics

This page only lists publications with an associated author ORCID identifier.

Publications

Megan Uttley, Grace Horne, Areti Tsigkinopoulou, Francesco Del Carratore, Aliah Hawari, Magdalena Kiezel-Tsugunova, Alexandra C Kendall, Janette Jones, David Messenger, Ranjit Kaur Bhogal, Rainer Breitling, Anna Nicolaou
An adaptable in silico ensemble model of the arachidonic acid cascade. Molecular omics 20 (7) (2024)
Megan Uttley, Grace Horne, Areti Tsigkinopoulou, Francesco Del Carratore, Aliah Hawari, Magdalena Kiezel-Tsugunova, Alexandra C Kendall, Janette Jones, David Messenger, Ranjit Kaur Bhogal, Rainer Breitling, Anna Nicolaou
An adaptable in silico ensemble model of the arachidonic acid cascade. Molecular omics 20 (7) (2024)
Jonathan Foldi, Jack A Connolly, Eriko Takano, Rainer Breitling
Synthetic Biology of Natural Products Engineering: Recent Advances Across the Discover-Design-Build-Test-Learn Cycle. ACS synthetic biology (2024)
Megan Uttley, Grace Horne, Areti Tsigkinopoulou, Francesco Del Carratore, Aliah Hawari, Magdalena Kiezel-Tsugunova, Alexandra C Kendall, Janette Jones, David Messenger, Ranjit Kaur Bhogal, Rainer Breitling, Anna Nicolaou
An adaptable in silico ensemble model of the arachidonic acid cascade. Molecular omics (2024)
Megan Uttley, Grace Horne, Areti Tsigkinopoulou, Francesco Del Carratore, Aliah Hawari, Magdalena Kiezel-Tsugunova, Alexandra C Kendall, Janette Jones, David Messenger, Ranjit Kaur Bhogal, Rainer Breitling, Anna Nicolaou
An adaptable in silico ensemble model of the arachidonic acid cascade. Molecular omics 20 (7) (2024)
Erik K R Hanko, Tariq A Joosab Noor Mahomed, Ruth A Stoney, Rainer Breitling
TFBMiner: A User-Friendly Command Line Tool for the Rapid Mining of Transcription Factor-Based Biosensors. ACS synthetic biology (2023)
Jack A Connolly, William R Harcombe, Michael J Smanski, Linda L Kinkel, Eriko Takano, Rainer Breitling
Harnessing intercellular signals to engineer the soil microbiome. Natural product reports (2021)
Hashwardhan Poddar, Rainer Breitling, Eriko Takano
Towards engineering and production of artificial spider silk using tools of synthetic biology. Engineering biology 4 (1) (2020)
Luke Kemp, Laura Adam, Christian R Boehm, Rainer Breitling, Rocco Casagrande, Malcolm Dando, Appolinaire Djikeng, Nicholas Greig Evans, Richard Hammond, Kelly Hills, Lauren A Holt, Todd Kuiken, Alemka Markotić, Piers Millett, Johnathan A Napier, Cassidy Nelson, Seán S ÓhÉigeartaigh, Anne Osbourn, Megan J Palmer, Nicola Joan Patron, Edward Perello, Wibool Piyawattanamatha, Vanessa Restrepo Schild, Clarissa Rios-Rojas, Catherine Rhodes, Anna Roessing, Deborah Scott, Philip Shapira, Christopher Simuntala, Robert D J Smith, Lalitha S Sundaram, Eriko Takano, Gwyn Uttmark, Bonnie Wintle, Nadia B Zahra, William J Sutherland
Bioengineering horizon scan 2020. eLife 9 (2020)
Areti Tsigkinopoulou, Eriko Takano, Rainer Breitling
Unravelling the γ-butyrolactone network in Streptomyces coelicolor by computational ensemble modelling. PLoS computational biology 16 (7) (2020)
Hashwardhan Poddar, Rainer Breitling, Eriko Takano
Towards engineering and production of artificial spider silk using tools of synthetic biology. Engineering biology 4 (1) (2020)
Francesco Del Carratore, Kamila Schmidt, Maria Vinaixa, Katherine A Hollywood, Caitlin Greenland-Bews, Eriko Takano, Simon Rogers, Rainer Breitling
Integrated Probabilistic Annotation: A Bayesian-Based Annotation Method for Metabolomic Profiles Integrating Biochemical Connections, Isotope Patterns, and Adduct Relationships. Analytical chemistry 91 (20) (2019)
Areti Tsigkinopoulou, Aliah Hawari, Megan Uttley, Rainer Breitling
Defining informative priors for ensemble modeling in systems biology. Nature protocols 13 (11) (2019)
Andrew Currin, Neil Swainston, Mark S Dunstan, Adrian J Jervis, Paul Mulherin, Christopher J Robinson, Sandra Taylor, Pablo Carbonell, Katherine A Hollywood, Cunyu Yan, Eriko Takano, Nigel S Scrutton, Rainer Breitling
Highly multiplexed, fast and accurate nanopore sequencing for verification of synthetic DNA constructs and sequence libraries. Synthetic biology (Oxford, England) 4 (1) (2019)
Adrian J Jervis, Pablo Carbonell, Maria Vinaixa, Mark S Dunstan, Katherine A Hollywood, Christopher J Robinson, Nicholas J W Rattray, Cunyu Yan, Neil Swainston, Andrew Currin, Rehana Sung, Helen S Toogood, Sandra Taylor, Jean-Loup Faulon, Rainer Breitling, Eriko Takano, Nigel S Scrutton
Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli. ACS synthetic biology 8 (1) (2019)
Francesco Del Carratore, Konrad Zych, Matthew Cummings, Eriko Takano, Marnix H Medema, Rainer Breitling
Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters. Communications biology 2 (2019)
Adrian J Jervis, Pablo Carbonell, Sandra Taylor, Rehana Sung, Mark S Dunstan, Christopher J Robinson, Rainer Breitling, Eriko Takano, Nigel S Scrutton
SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli. ACS synthetic biology 8 (7) (2019)
Rosa Morra, Francesco Del Carratore, Howbeer Muhamadali, Luminita Gabriela Horga, Samantha Halliwell, Royston Goodacre, Rainer Breitling, Neil Dixon
Translation Stress Positively Regulates MscL-Dependent Excretion of Cytoplasmic Proteins. mBio 9 (1) (2018)
Marc Biarnes-Carrera, Chang-Kwon Lee, Takuya Nihira, Rainer Breitling, Eriko Takano
Orthogonal Regulatory Circuits for Escherichia coli Based on the γ-Butyrolactone System of Streptomyces coelicolor. ACS synthetic biology 7 (4) (2018)
Marina Wright Muelas, Fernando Ortega, Rainer Breitling, Claus Bendtsen, Hans V Westerhoff
Rational cell culture optimization enhances experimental reproducibility in cancer cells. Scientific reports 8 (1) (2018)
Pablo Carbonell, Adrian J Jervis, Christopher J Robinson, Cunyu Yan, Mark Dunstan, Neil Swainston, Maria Vinaixa, Katherine A Hollywood, Andrew Currin, Nicholas J W Rattray, Sandra Taylor, Reynard Spiess, Rehana Sung, Alan R Williams, Donal Fellows, Natalie J Stanford, Paul Mulherin, Rosalind Le Feuvre, Perdita E Barran, Royston Goodacre, Nicholas J Turner, Carole Goble, George Guoqiang Chen, Douglas B Kell, Jason Micklefield, Rainer Breitling, Eriko Takano, Jean-Loup Faulon, Nigel S Scrutton
An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals. Communications biology 1 (2018)
Bonnie C Wintle, Christian R Boehm, Catherine Rhodes, Jennifer C Molloy, Piers Millett, Laura Adam, Rainer Breitling, Rob Carlson, Rocco Casagrande, Malcolm Dando, Robert Doubleday, Eric Drexler, Brett Edwards, Tom Ellis, Nicholas Greig Evans, Richard Hammond, Jim Haseloff, Linda Kahl, Todd Kuiken, Benjamin R Lichman, Colette A Matthewman, Johnathan A Napier, Seán S ÓhÉigeartaigh, Nicola Joan Patron, Edward Perello, Philip Shapira, Joyce Tait, Eriko Takano, William J Sutherland
A transatlantic perspective on 20 emerging issues in biological engineering. eLife 6 (2017)
Konrad Zych, Basten L Snoek, Mark Elvin, Miriam Rodriguez, K Joeri Van der Velde, Danny Arends, Harm-Jan Westra, Morris A Swertz, Gino Poulin, Jan E Kammenga, Rainer Breitling, Ritsert C Jansen, Yang Li
reGenotyper: Detecting mislabeled samples in genetic data. PloS one 12 (2) (2017)
Neil Swainston, Riza Batista-Navarro, Pablo Carbonell, Paul D Dobson, Mark Dunstan, Adrian J Jervis, Maria Vinaixa, Alan R Williams, Sophia Ananiadou, Jean-Loup Faulon, Robert Müller, Douglas B Kell, Nigel S Scrutton, Rainer Breitling
biochem4j: Integrated and extensible biochemical knowledge through graph databases. PloS one 12 (7) (2017)