Robert James Gifford (Robert J Gifford, Robert M Gifford, Robert R Gifford, Robert Gifford)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 34

Top Topics

Circulating Tumor

High Throughput Sequencing

Top Venues

Virus evolution

Proceedings of the National Academy of Sciences of the United States of America

Journal of virology

This page only lists publications with an associated author ORCID identifier.

Publications

Daniel Blanco-Melo, Matthew A Campbell, Henan Zhu, Tristan P W Dennis, Sejal Modha, Spyros Lytras, Joseph Hughes, Anna Gatseva, Robert James Gifford
A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil record. Genome biology 25 (1) (2024)
Daniel Blanco-Melo, Matthew A Campbell, Henan Zhu, Tristan P W Dennis, Sejal Modha, Spyros Lytras, Joseph Hughes, Anna Gatseva, Robert James Gifford
A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil record. Genome biology 25 (1) (2024)
Daniel Blanco-Melo, Matthew A Campbell, Henan Zhu, Tristan P W Dennis, Sejal Modha, Spyros Lytras, Joseph Hughes, Anna Gatseva, Robert James Gifford
A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil record. Genome biology 25 (1) (2024)
Maria-Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir R Abi-Said, Stéphane Hué, Joseph Hughes, Anna Gatseva, Robert James Gifford
Emergence and pandemic spread of small ruminant lentiviruses. Virus evolution 9 (1) (2023)
Maria-Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir R Abi-Said, Stéphane Hué, Joseph Hughes, Anna Gatseva, Robert James Gifford
Emergence and pandemic spread of small ruminant lentiviruses. Virus evolution 9 (1) (2023)
Angelica Bravo, Leandro Fernández-García, Rodrigo Ibarra-Karmy, Gonzalo A Mardones, Luis Mercado, Fernando Jose Bustos, Robert James Gifford, Gloria Arriagada
Antiviral Activity of an Endogenous Parvoviral Element. Viruses 15 (7) (2023)
Matthew A Campbell, Shannon Loncar, Robert M Kotin, Robert James Gifford
Comparative analysis reveals the long-term coevolutionary history of parvoviruses and vertebrates. PLoS biology 20 (11) (2022)
Kathryn Campbell, Robert James Gifford, Joshua Singer, Verity Hill, Aine O'Toole, Andrew Rambaut, Katie Hampson, Kirstyn Brunker
Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination. PLoS pathogens 18 (5) (2022)
Liane P Fernandes, Rocio Enriquez-Gasca, Poppy A Gould, James H Holt, Lucia Conde, Gabriela Ecco, Javier Herrero, Robert James Gifford, Didier Trono, George Kassiotis, Helen M Rowe
A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819. Science advances 8 (43) (2022)
Christian Shema Mugisha, Tung Dinh, Abhishek Kumar, Kasyap Tenneti, Jenna E Eschbach, Keanu Davis, Robert James Gifford, Mamuka Kvaratskhelia, Sebla B Kutluay
Emergence of Compensatory Mutations Reveals the Importance of Electrostatic Interactions between HIV-1 Integrase and Genomic RNA. mBio 13 (5) (2022)
Martina Zafferani, Christina Haddad, Le Luo, Jesse Davila-Calderon, Liang-Yuan Chiu, Christian Shema Mugisha, Adeline G Monaghan, Andrew A Kennedy, Joseph D Yesselman, Robert James Gifford, Andrew W Tai, Sebla B Kutluay, Mei-Ling Li, Gary Brewer, Blanton S Tolbert, Amanda E Hargrove
Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures. Science advances 7 (48) (2021)
Rhys H Parry, Robert James Gifford, Spyros Lytras, Stuart C Ray, Lachlan J M Coin
No evidence of SARS-CoV-2 reverse transcription and integration as the origin of chimeric transcripts in patient tissues. Proceedings of the National Academy of Sciences of the United States of America 118 (33) (2021)
Robert James Gifford, Thomas J O'Leary, Sophie L Wardle, Rebecca L Double, Natalie Z M Homer, A Forbes Howie, Julie P Greeves, Richard A Anderson, David R Woods, Rebecca M Reynolds
Reproductive and metabolic adaptation to multistressor training in women. American journal of physiology. Endocrinology and metabolism 321 (2) (2021)
Robert James Gifford
Mapping the evolution of bornaviruses across geological timescales. Proceedings of the National Academy of Sciences of the United States of America 118 (26) (2021)
Spyros Lytras, Gloria Arriagada, Robert James Gifford
Ancient evolution of hepadnaviral paleoviruses and their impact on host genomes. Virus evolution 7 (1) (2021)
Evin Hildebrandt, Judit J Penzes, Robert James Gifford, Mavis Agbandje-Mckenna, Robert M Kotin
Evolution of dependoparvoviruses across geological timescales-implications for design of AAV-based gene therapy vectors. Virus evolution 6 (2) (2020)
Kirstyn Brunker, Gurdeep Jaswant, Samuel Mwangi Thumbi, Kennedy Lushasi, Ahmed Lugelo, Anna M Czupryna, Fred Ade, Gati Wambura, Veronicah Chuchu, Rachel Steenson, Chanasa Ngeleja, Criselda Bautista, Daria L Manalo, Ma Ricci R Gomez, Maria Yna Joyce V Chu, Mary Elizabeth Miranda, Maya Kamat, Kristyna Rysava, Jason Espineda, Eva Angelica V Silo, Ariane Mae Aringo, Rona P Bernales, Florencio F Adonay, Michael J Tildesley, Denise A Marston, Daisy L Jennings, Anthony R Fooks, Wenlong Zhu, Luke William Meredith, Sarah C Hill, Radoslaw Poplawski, Robert James Gifford, Joshua B Singer, Mathew Maturi, Athman Mwatondo, Roman Biek, Katie Hampson
Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes. Wellcome open research 5 (2020)
Martina Zafferani, Christina Haddad, Le Luo, Jesse Davila-Calderon, Liang Yuan-Chiu, Christian Shema Mugisha, Adeline G Monaghan, Andrew A Kennedy, Joseph D Yesselman, Robert James Gifford, Andrew W Tai, Sebla B Kutluay, Mei-Ling Li, Gary Brewer, Blanton S Tolbert, Amanda E Hargrove
Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures. bioRxiv : the preprint server for biology (2020)
Kirstyn Brunker, Gurdeep Jaswant, Samuel Mwangi Thumbi, Kennedy Lushasi, Ahmed Lugelo, Anna M Czupryna, Fred Ade, Gati Wambura, Veronicah Chuchu, Rachel Steenson, Chanasa Ngeleja, Criselda Bautista, Daria L Manalo, Ma Ricci R Gomez, Maria Yna Joyce V Chu, Mary Elizabeth Miranda, Maya Kamat, Kristyna Rysava, Jason Espineda, Eva Angelica V Silo, Ariane Mae Aringo, Rona P Bernales, Florencio F Adonay, Michael J Tildesley, Denise A Marston, Daisy L Jennings, Anthony R Fooks, Wenlong Zhu, Luke William Meredith, Sarah C Hill, Radoslaw Poplawski, Robert James Gifford, Joshua B Singer, Mathew Maturi, Athman Mwatondo, Roman Biek, Katie Hampson
Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes. Wellcome open research (2020)
Fabian Schmidt, Brandon F Keele, Gregory Q Del Prete, Dennis Voronin, Christine M Fennessey, Steven Soll, Melissa Kane, Alice Raymond, Robert James Gifford, Vineet KewalRamani, Jeffrey D Lifson, Paul D Bieniasz, Theodora Hatziioannou
Derivation of simian tropic HIV-1 infectious clone reveals virus adaptation to a new host. Proceedings of the National Academy of Sciences of the United States of America 116 (21) (2019)
Ignacio Valencia-Herrera, Fernando Faunes, Eduardo Cena-Ahumada, Rodrigo Ibarra-Karmy, Robert James Gifford, Gloria Arriagada
Molecular Properties and Evolutionary Origins of a Parvovirus-Derived Myosin Fusion Gene in Guinea Pigs. Journal of virology 93 (17) (2019)
Tomáš Hron, Daniel Elleder, Robert James Gifford
Deltaretroviruses have circulated since at least the Paleogene and infected a broad range of mammalian species. Retrovirology 16 (1) (2019)
Joshua B Singer, Emma C Thomson, Joseph Hughes, Elihu Aranday-Cortes, John McLauchlan, Ana da Silva Filipe, Lily Tong, Carmen F Manso, Robert James Gifford, David L Robertson, Eleanor Barnes, M Azim Ansari, Jean L Mbisa, David F Bibby, Daniel Bradshaw, David Anthony Smith
Interpreting Viral Deep Sequencing Data with GLUE. Viruses 11 (4) (2019)
Judit J Pénzes, William Marciel de Souza, Mavis Agbandje-McKenna, Robert James Gifford
An Ancient Lineage of Highly Divergent Parvoviruses Infects both Vertebrate and Invertebrate Hosts. Viruses 11 (6) (2019)
Jumpei Ito, Robert James Gifford, Kei Sato
Retroviruses drive the rapid evolution of mammalian APOBEC3 genes. Proceedings of the National Academy of Sciences of the United States of America 117 (1) (2019)
Heather M Callaway, Suriyasri Subramanian, Christian A Urbina, Karen N Barnard, Robert A Dick, Carol M Bator, Susan L Hafenstein, Robert James Gifford, Colin R Parrish
Examination and Reconstruction of Three Ancient Endogenous Parvovirus Capsid Protein Gene Remnants Found in Rodent Genomes. Journal of virology 93 (6) (2019)
Tristan P W Dennis, Peter J Flynn, William Marciel de Souza, Joshua B Singer, Corrie S Moreau, Sam J Wilson, Robert James Gifford
Insights into Circovirus Host Range from the Genomic Fossil Record. Journal of virology 92 (16) (2018)
Robert James Gifford, Jonas Blomberg, John M Coffin, Hung Fan, Thierry Heidmann, Jens Mayer, Jonathan Stoye, Michael Tristem, Welkin E Johnson
Nomenclature for endogenous retrovirus (ERV) loci. Retrovirology 15 (1) (2018)
Judit J Pénzes, Soledad Marsile-Medun, Mavis Agbandje-McKenna, Robert James Gifford
Endogenous amdoparvovirus-related elements reveal insights into the biology and evolution of vertebrate parvoviruses. Virus evolution 4 (2) (2018)
Henan Zhu, Robert James Gifford, Pablo Ramiro Murcia
Distribution, Diversity, and Evolution of Endogenous Retroviruses in Perissodactyl Genomes. Journal of virology 92 (23) (2018)
William Marciel de Souza, Tristan Dennis, Marcílio Jorge Fumagalli, Jansen Araujo, Gilberto Sabino-Santos, Felipe Gonçalves Motta Maia, Gustavo Olszanski Acrani, Adriano de Oliveira Torres Carrasco, Marilia Farignoli Romeiro, Sejal Modha, Luiz Carlos Vieira, Tatiana Ometto, Luzia Helena Queiroz, Edison Luiz Durigon, Márcio Roberto Teixeira Nunes, Luiz Tadeu Moraes Figueiredo, Robert James Gifford
Novel Parvoviruses from Wild and Domestic Animals in Brazil Provide New Insights into Parvovirus Distribution and Diversity. Viruses 10 (4) (2018)
Tomáš Hron, Helena Farkašová, Robert James Gifford, Petr Benda, Pavel Hulva, Tamás Görföl, Jan Pačes, Daniel Elleder
Remnants of an Ancient Deltaretrovirus in the Genomes of Horseshoe Bats (Rhinolophidae). Viruses 10 (4) (2018)
Helena Farkašová, Tomáš Hron, Jan Pačes, Pavel Hulva, Petr Benda, Robert James Gifford, Daniel Elleder
Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae). Proceedings of the National Academy of Sciences of the United States of America 114 (12) (2017)
Daniel Blanco-Melo, Robert James Gifford, Paul D Bieniasz
Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors. eLife 6 (2017)