Didier Trono

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 38

Top Topics

Embryonic Stem Cells

Gene Expression

Top Venues

Nature communications

Science advances

Development (Cambridge, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Martina Begnis, Julien Duc, Sandra Offner, Delphine Grun, Shaoline Sheppard, Olga Rosspopoff, Didier Trono
Clusters of lineage-specific genes are anchored by ZNF274 in repressive perinucleolar compartments. Science advances 10 (37) (2024)
Filipe Martins, Olga Rosspopoff, Joana Carlevaro-Fita, Romain Forey, Sandra Offner, Evarist Planet, Cyril Pulver, HuiSong Pak, Florian Huber, Justine Michaux, Michal Bassani-Sternberg, Priscilla Turelli, Didier Trono
A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress-Induced Inflammation. Cancer research (2024)
Nikolaos M R Lykoskoufis, Evarist Planet, Halit Ongen, Didier Trono, Emmanouil T Dermitzakis
Transposable elements mediate genetic effects altering the expression of nearby genes in colorectal cancer. Nature communications 15 (1) (2024)
Nikolaos M R Lykoskoufis, Evarist Planet, Halit Ongen, Didier Trono, Emmanouil T Dermitzakis
Transposable elements mediate genetic effects altering the expression of nearby genes in colorectal cancer. Nature communications 15 (1) (2024)
Nikolaos M R Lykoskoufis, Evarist Planet, Halit Ongen, Didier Trono, Emmanouil T Dermitzakis
Transposable elements mediate genetic effects altering the expression of nearby genes in colorectal cancer. Nature communications 15 (1) (2024)
Filipe Martins, Olga Rosspopoff, Joana Carlevaro-Fita, Romain Forey, Sandra Offner, Evarist Planet, Cyril Pulver, HuiSong Pak, Florian Huber, Justine Michaux, Michal Bassani-Sternberg, Priscilla Turelli, Didier Trono
A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress-Induced Inflammation. Cancer research 84 (6) (2024)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature 617 (7959) (2023)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature 617 (7959) (2023)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature (2023)
Anne I Kraemer, Chloe Chong, Florian Huber, HuiSong Pak, Brian J Stevenson, Markus Müller, Justine Michaux, Emma Ricart Altimiras, Sylvie Rusakiewicz, Laia Simó-Riudalbas, Evarist Planet, Maciej Wiznerowicz, Julien Dagher, Didier Trono, Sergio A Quezada, Stephanie Tissot, Michal Bassani-Sternberg
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer. Nature cancer (2023)
Christina Ernst, Julien Duc, Didier Trono
Efficient and sensitive profiling of RNA-protein interactions using TLC-CLIP. Nucleic acids research (2023)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature 617 (7959) (2023)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature (2023)
Anne I Kraemer, Chloe Chong, Florian Huber, HuiSong Pak, Brian J Stevenson, Markus Müller, Justine Michaux, Emma Ricart Altimiras, Sylvie Rusakiewicz, Laia Simó-Riudalbas, Evarist Planet, Maciej Wiznerowicz, Julien Dagher, Didier Trono, Sergio A Quezada, Stephanie Tissot, Michal Bassani-Sternberg
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer. Nature cancer (2023)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature 617 (7959) (2023)
Cyril Pulver, Delphine Grun, Julien Duc, Shaoline Sheppard, Evarist Planet, Alexandre Coudray, Raphaël de Fondeville, Julien Pontis, Didier Trono
Statistical learning quantifies transposable element-mediated cis-regulation. Genome biology 24 (1) (2023)
Pablo Gainza, Sarah Wehrle, Alexandra Van Hall-Beauvais, Anthony Marchand, Andreas Scheck, Zander Harteveld, Stephen Buckley, Dongchun Ni, Shuguang Tan, Freyr Sverrisson, Casper Goverde, Priscilla Turelli, Charlène Raclot, Alexandra Teslenko, Martin Pacesa, Stéphane Rosset, Sandrine Georgeon, Jane Marsden, Aaron S Petruzzella, Kefang Liu, Zepeng Xu, Yan Chai, Pu Han, George Fu Gao, Elisa Oricchio, Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, Bruno E Correia
De novo design of protein interactions with learned surface fingerprints. Nature (2023)
Francisco Sarmento Mesquita, Laurence Abrami, Lucie Bracq, Nattawadee Panyain, Vincent Mercier, Béatrice Kunz, Audrey Chuat, Joana Carlevaro-Fita, Didier Trono, F Gisou van der Goot
SARS-CoV-2 hijacks a cell damage response, which induces transcription of a more efficient Spike S-acyltransferase. Nature communications 14 (1) (2023)
Olga Rosspopoff, Filipe Martins, Didier Trono
New ingredients for old recipes. Nature genetics (2023)
Alexandra Iouranova, Delphine Grun, Tamara Rossy, Julien Duc, Alexandre Coudray, Michael Imbeault, Jonas de Tribolet-Hardy, Priscilla Turelli, Alexandre Persat, Didier Trono
KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences. Mobile DNA 13 (1) (2022)
Laia Simó-Riudalbas, Sandra Offner, Evarist Planet, Julien Duc, Laurence Abrami, Sagane Dind, Alexandre Coudray, Mairene Coto-Llerena, Caner Ercan, Salvatore Piscuoglio, Claus Lindbjerg Andersen, Jesper Bertram Bramsen, Didier Trono
Transposon-activated POU5F1B promotes colorectal cancer growth and metastasis. Nature communications 13 (1) (2022)
Christopher J Playfoot, Shaoline Sheppard, Evarist Planet, Didier Trono
Transposable elements contribute to the spatiotemporal microRNA landscape in human brain development. RNA (New York, N.Y.) 28 (9) (2022)
Julien Pontis, Cyril Pulver, Christopher J Playfoot, Evarist Planet, Delphine Grun, Sandra Offner, Julien Duc, Andrea Manfrin, Matthias P Lutolf, Didier Trono
Primate-specific transposable elements shape transcriptional networks during human development. Nature communications 13 (1) (2022)
Craig Fenwick, Priscilla Turelli, Dongchun Ni, Laurent Perez, Kelvin Lau, Cécile Herate, Romain Marlin, Erica Lana, Céline Pellaton, Charlène Raclot, Line Esteves-Leuenberger, Jérémy Campos, Alex Farina, Flurin Fiscalini, Nathalie Bosquet, Francis Relouzat, Rana Abdelnabi, Shi-Yan Caroline Foo, Johan Neyts, Pieter Leyssen, Yves Lévy, Florence Pojer, Henning Stahlberg, Roger LeGrand, Didier Trono, Guiseppe Pantaleo
Patient-derived monoclonal antibody neutralizes SARS-CoV-2 Omicron variants and confers full protection in monkeys. Nature microbiology 7 (9) (2022)
Xinyu Xiang, Yu Tao, Jonathan DiRusso, Fei-Man Hsu, Jinchun Zhang, Ziwei Xue, Julien Pontis, Didier Trono, Wanlu Liu, Amander T Clark
Human reproduction is regulated by retrotransposons derived from ancient Hominidae-specific viral infections. Nature communications 13 (1) (2022)
Liane P Fernandes, Rocio Enriquez-Gasca, Poppy A Gould, James H Holt, Lucia Conde, Gabriela Ecco, Javier Herrero, Robert James Gifford, Didier Trono, George Kassiotis, Helen M Rowe
A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819. Science advances 8 (43) (2022)
Craig Fenwick, Priscilla Turelli, Céline Pellaton, Alex Farina, Jérémy Campos, Charlène Raclot, Florence Pojer, Valeria Cagno, Semira Gonseth Nusslé, Valerie D'Acremont, Jan Fehr, Milo Puhan, Guiseppe Pantaleo, Didier Trono
A high-throughput cell- and virus-free assay shows reduced neutralization of SARS-CoV-2 variants by COVID-19 convalescent plasma. Science translational medicine 13 (605) (2021)
Christopher J Playfoot, Julien Duc, Shaoline Sheppard, Sagane Dind, Alexandre Coudray, Evarist Planet, Didier Trono
Transposable elements and their KZFP controllers are drivers of transcriptional innovation in the developing human brain. Genome research 31 (9) (2021)
Matthias M Schneider, Marc Emmenegger, Catherine K Xu, Itzel Condado-Morales, Georg Meisl, Priscilla Turelli, Chrysoula Zografou, Manuela R Zimmermann, Beat M Frey, Sebastian Fiedler, Viola Denninger, Raphaël P B Jacquat, Lidia Madrigal, Alison Ilsley, Vasilis Kosmoliaptsis, Heike Fiegler, Didier Trono, Tuomas Pj Knowles, Adriano Aguzzi
Microfluidic characterisation reveals broad range of SARS-CoV-2 antibody affinity in human plasma. Life science alliance 5 (2) (2021)
Silvia Stringhini, María-Eugenia Zaballa, Nick Pullen, Carlos de Mestral, Javier Perez-Saez, Roxane Dumont, Attilio Picazio, Francesco Pennacchio, Yaron Dibner, Sabine Yerly, Helene Baysson, Nicolas Vuilleumier, Jean-François Balavoine, Delphine Bachmann, Didier Trono, Didier Pittet, François Chappuis, Omar Kherad, Laurent Kaiser, Andrew S Azman, null null, Idris Guessous
Large variation in anti-SARS-CoV-2 antibody prevalence among essential workers in Geneva, Switzerland. Nature communications 12 (1) (2021)
Priscilla Turelli, Christopher J Playfoot, Dephine Grun, Charlène Raclot, Julien Pontis, Alexandre Coudray, Christian W Thorball, Julien Duc, Eugenia V Pankevich, Bart Deplancke, Volker Busskamp, Didier Trono
Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons. Science advances 6 (35) (2020)
Gernot Wolf, Alberto de Iaco, Ming-An Sun, Melania Bruno, Matthew Tinkham, Don Hoang, Apratim Mitra, Sherry Ralls, Didier Trono, Todd S Macfarlan
KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage. eLife 9 (2020)
Alberto De Iaco, Sonia Verp, Sandra Offner, Delphine Grun, Didier Trono
DUX is a non-essential synchronizer of zygotic genome activation. Development (Cambridge, England) 147 (2) (2020)
Jumpei Ito, Izumi Kimura, Andrew Soper, Alexandre Coudray, Yoshio Koyanagi, Hirofumi Nakaoka, Ituro Inoue, Priscilla Turelli, Didier Trono, Kei Sato
Endogenous retroviruses drive KRAB zinc-finger protein family expression for tumor suppression. Science advances 6 (43) (2020)
Pierre-Yves Helleboid, Moritz Heusel, Julien Duc, Cécile Piot, Christian W Thorball, Andrea Coluccio, Julien Pontis, Michaël Imbeault, Priscilla Turelli, Ruedi Aebersold, Didier Trono
The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification. The EMBO journal 38 (18) (2019)
Alberto De Iaco, Alexandre Coudray, Julien Duc, Didier Trono
DPPA2 and DPPA4 are necessary to establish a 2C-like state in mouse embryonic stem cells. EMBO reports 20 (5) (2019)
Andrea Coluccio, Gabriela Ecco, Julien Duc, Sandra Offner, Priscilla Turelli, Didier Trono
Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells. Epigenetics & chromatin 11 (1) (2018)
Gabriela Ecco, Michael Imbeault, Didier Trono
KRAB zinc finger proteins. Development (Cambridge, England) 144 (15) (2017)