Runxuan Zhang

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 14

Top Venues

The Plant journal : for cell and molecular biology

The Plant cell

The New phytologist

Journal of experimental botany

James Hutton Institute

Nanyang Technological University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

James Hutton Institute Apr 01 2011

United Kingdom

Computational Biologist :: Information and Computational Sciences

Education History

Nanyang Technological University

Singapore

PHD

Publications

Mehmet Fatih Kara, Wenbin Guo, Runxuan Zhang, Katherine J Denby
LsRTDv1, a reference transcript dataset for accurate transcript-specific expression analysis in lettuce. The Plant journal : for cell and molecular biology (2024)
Sophia S Puliasis, Dominika Lewandowska, Piers A Hemsley, Runxuan Zhang
ProtView: A Versatile Tool for In Silico Protease Evaluation and Selection in a Proteomic and Proteogenomic Context. Journal of proteome research (2023)
Allan B James, Chantal Sharples, Janet Laird, Emily May Armstrong, Wenbin Guo, Nikoleta A Tzioutziou, Runxuan Zhang, John W S Brown, Hugh G Nimmo, Matthew Alan Jones
REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock. The New phytologist (2023)
Max Coulter, Juan Carlos Entizne, Wenbin Guo, Micha Bayer, Ronja Wonneberger, Linda Milne, Miriam Schreiber, Allison Haaning, Gary J Muehlbauer, Nicola McCallum, John Fuller, Craig Simpson, Nils Stein, John W S Brown, Robbie Waugh, Runxuan Zhang
BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification. The Plant journal : for cell and molecular biology 111 (4) (2022)
Wenbin Guo, Max Coulter, Robbie Waugh, Runxuan Zhang
The value of genotype-specific reference for transcriptome analyses in barley. Life science alliance 5 (8) (2022)
Runxuan Zhang, Richard Kuo, Max Coulter, Cristiane P G Calixto, Juan Carlos Entizne, Wenbin Guo, Yamile Marquez, Linda Milne, Stefan Riegler, Akihiro Matsui, Maho Tanaka, Sarah Harvey, Yubang Gao, Theresa Wießner-Kroh, Alejandro Paniagua, Martin Crespi, Katherine Denby, Asa Ben Hur, Enamul Huq, Michael Jantsch, Artur Jarmolowski, Tino Koester, Sascha Laubinger, Qingshun Quinn Li, Lianfeng Gu, Motoaki Seki, Dorothee Staiger, Ramanjulu Sunkar, Zofia Szweykowska-Kulinska, Shih-Long Tu, Andreas Wachter, Robbie Waugh, Liming Xiong, Xiao-Ning Zhang, Ana Conesa, Anireddy S N Reddy, Andrea Barta, Maria Kalyna, John W S Brown
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome biology 23 (1) (2022)
Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolas Manosalva Perez, Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang, Klaas Vandepoele, Daniel MacLean, Jonathan D G Jones
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. Journal of experimental botany 72 (22) (2021)
Dominika Lewandowska, Jamie Orr, Miriam Schreiber, Isabelle Colas, Luke Ramsay, Runxuan Zhang, Robbie Waugh
The proteome of developing barley anthers during meiotic prophase I. Journal of experimental botany (2021)
Wenbin Guo, Nikoleta A Tzioutziou, Gordon Stephen, Iain Milne, Cristiane Paula Gomes Calixto, Robbie Waugh, John W S Brown, Runxuan Zhang
3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists. RNA biology 18 (11) (2020)
Ibtissam Jabre, Saurabh Chaudhary, Wenbin Guo, Maria Kalyna, Anireddy S N Reddy, Weizhong Chen, Runxuan Zhang, Cornelia M Wilson, Naeem H Syed
Differential nucleosome occupancy modulates alternative splicing in Arabidopsis thaliana. The New phytologist 229 (4) (2020)
Vivek Kumar Raxwal, Craig G Simpson, Jiradet Gloggnitzer, Juan Carlos Entizne, Wenbin Guo, Runxuan Zhang, John W S Brown, Karel Riha
Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis. The Plant cell 32 (9) (2020)
Sarah Harvey, Priyanka Kumari, Dmitry Lapin, Thomas Griebel, Richard Hickman, Wenbin Guo, Runxuan Zhang, Jane E Parker, Jim L Beynon, Katherine J Denby, Jens Steinbrenner
Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility. PLoS pathogens 16 (8) (2020)
Cristiane Paula Gomes Calixto, Wenbin Guo, Allan B James, Nikoleta A Tzioutziou, Juan Carlos Entizne, Paige E Panter, Heather Knight, Hugh G Nimmo, Runxuan Zhang, John W S Brown
Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome. The Plant cell 30 (7) (2018)
Wenbin Guo, Cristiane P G Calixto, Nikoleta Tzioutziou, Ping Lin, Robbie Waugh, John W S Brown, Runxuan Zhang
Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size. BMC systems biology 11 (1) (2017)

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Publication Activity (10 Years)

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Runxuan Zhang