Klaas Vandepoele

ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 42

Top Venues

Plant physiology

Proceedings of the National Academy of Sciences of the United States of America

Journal of experimental botany

The Plant cell

Ghent University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Ghent University Feb 01 2011

Belgium

Full Professor :: Department of Plant Biotechnology and Bioinformatics

Publications

Sien Audoor, Gust Bilcke, Katerina Pargana, Darja Belišová, Sander Thierens, Michiel Van Bel, Lieven Sterck, Nadine Rijsdijk, Rossella Annunziata, Maria Immacolata Ferrante, Klaas Vandepoele, Wim Vyverman
Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction. Molecular ecology 33 (8) (2024)
Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq
Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses. Journal of experimental botany 75 (15) (2024)
Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq
ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced retrograde signaling. Journal of experimental botany (2024)
Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq
Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses. Journal of experimental botany 75 (15) (2024)
Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq
Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses. Journal of experimental botany 75 (15) (2024)
Sien Audoor, Gust Bilcke, Katerina Pargana, Darja Belišová, Sander Thierens, Michiel Van Bel, Lieven Sterck, Nadine Rijsdijk, Rossella Annunziata, Maria Immacolata Ferrante, Klaas Vandepoele, Wim Vyverman
Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction. Molecular ecology 33 (8) (2024)
Klaas Vandepoele, Sander Thierens, Michiel Van Bel
Application of orthology and network biology to infer gene functions in non-model plants. Physiologia plantarum 176 (4) (2024)
Sien Audoor, Gust Bilcke, Katerina Pargana, Darja Belišová, Sander Thierens, Michiel Van Bel, Lieven Sterck, Nadine Rijsdijk, Rossella Annunziata, Maria Immacolata Ferrante, Klaas Vandepoele, Wim Vyverman
Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction. Molecular ecology (2024)
Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq
Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses. Journal of experimental botany 75 (15) (2024)
Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez, Jhon Venegas-Molina, Ana Cristina Jaramillo-Madrid, Savio D Rodrigues, Liesbeth De Milde, Veronique Jonckheere, Marc Van Montagu, Barbara De Coninck, Klaas Vandepoele, Petra Van Damme, Alain Goossens
Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America 120 (3) (2023)
Anikó Meijer, Mohammad Reza Atighi, Kristof Demeestere, Tim De Meyer, Klaas Vandepoele, Tina Kyndt
Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses. Plant physiology (2023)
Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez, Jhon Venegas-Molina, Ana Cristina Jaramillo-Madrid, Savio D Rodrigues, Liesbeth De Milde, Veronique Jonckheere, Marc Van Montagu, Barbara De Coninck, Klaas Vandepoele, Petra Van Damme, Alain Goossens
Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America 120 (3) (2023)
Jirina Zackova Suchanova, Gust Bilcke, Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair W Skeffington, Michael Schroeder, Wim Vyverman, Klaas Vandepoele, Nils Kröger, Nicole Poulsen
Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation. The New phytologist (2023)
Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez, Jhon Venegas-Molina, Ana Cristina Jaramillo-Madrid, Savio D Rodrigues, Liesbeth De Milde, Veronique Jonckheere, Marc Van Montagu, Barbara De Coninck, Klaas Vandepoele, Petra Van Damme, Alain Goossens
Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America 120 (3) (2023)
Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez, Jhon Venegas-Molina, Ana Cristina Jaramillo-Madrid, Savio D Rodrigues, Liesbeth De Milde, Veronique Jonckheere, Marc Van Montagu, Barbara De Coninck, Klaas Vandepoele, Petra Van Damme, Alain Goossens
Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America 120 (3) (2023)
Nicolás Manosalva Pérez, Camilla Ferrari, Julia Engelhorn, Thomas Depuydt, Hilde Nelissen, Thomas Hartwig, Klaas Vandepoele
MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant journal : for cell and molecular biology (2023)
Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez, Jhon Venegas-Molina, Ana Cristina Jaramillo-Madrid, Savio D Rodrigues, Liesbeth De Milde, Veronique Jonckheere, Marc Van Montagu, Barbara De Coninck, Klaas Vandepoele, Petra Van Damme, Alain Goossens
Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America 120 (3) (2023)
Lore Gryffroy, Evi Ceulemans, Nicolás Manosalva Pérez, Jhon Venegas-Molina, Ana Cristina Jaramillo-Madrid, Savio D Rodrigues, Liesbeth De Milde, Veronique Jonckheere, Marc Van Montagu, Barbara De Coninck, Klaas Vandepoele, Petra Van Damme, Alain Goossens
Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America 120 (3) (2023)
Li Liu, Michel Heidecker, Thomas Depuydt, Nicolás Manosalva Pérez, Martin Crespi, Thomas Blein, Klaas Vandepoele
Transcription factors KAN1, MYB44, and PIF4 regulate lincRNAs expressed in Arabidopsis roots. Plant physiology (2023)
Pasquale Luca Curci, Jie Zhang, Niklas Mähler, Carolin Seyfferth, Chanaka Mannapperuma, Tim Diels, Tom Van Hautegem, David Jonsen, Nathaniel Robert Street, Torgeir R Hvidsten, Magnus Hertzberg, Ove Nilsson, Dirk Inzé, Hilde Nelissen, Klaas Vandepoele
Identification of growth regulators using cross-species network analysis in plants. Plant physiology 190 (4) (2022)
Anikó Meijer, Tim De Meyer, Klaas Vandepoele, Tina Kyndt
Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues. BMC genomics 23 (1) (2022)
Alex Willems, Yuanke Liang, Jefri Heyman, Thomas Depuydt, Thomas Eekhout, Balkan Canher, Hilde Van den Daele, Ilse Vercauteren, Klaas Vandepoele, Lieven De Veylder
Plant Lineage-Specific PIKMIN1 Drives APC/CCCS52A2 E3-Ligase Activity-Dependent Cell Division. Plant physiology (2022)
Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolas Manosalva Perez, Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang, Klaas Vandepoele, Daniel MacLean, Jonathan D G Jones
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. Journal of experimental botany 72 (22) (2021)
Thomas Depuydt, Klaas Vandepoele
Multi-omics network-based functional annotation of unknown Arabidopsis genes. The Plant journal : for cell and molecular biology 108 (4) (2021)
Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoit Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W Wasserman, Francois Parcy, Anthony Mathelier
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic acids research (2021)
Gust Bilcke, Cristina Maria Osuna-Cruz, Marta Santana Silva, Nicole Poulsen, Sofie D'hondt, Petra Bulankova, Wim Vyverman, Lieven De Veylder, Klaas Vandepoele
Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle. The Plant journal : for cell and molecular biology 107 (1) (2021)
Michiel Van Bel, Francesca Silvestri, Eric M Weitz, Łukasz Kreft, Alexander Botzki, Frederik Coppens, Klaas Vandepoele
PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. Nucleic acids research (2021)
Inge De Clercq, Jan Van de Velde, Xiaopeng Luo, Li Liu, Veronique Storme, Michiel Van Bel, Robin Pottie, Dries Vaneechoutte, Frank Van Breusegem, Klaas Vandepoele
Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators. Nature plants 7 (4) (2021)
François Bucchini, Andrea Del Cortona, Łukasz Kreft, Alexander Botzki, Michiel Van Bel, Klaas Vandepoele
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. Nucleic acids research 49 (17) (2021)
Ramon Massana, Aurelie Labarre, David López-Escardó, Aleix Obiol, François Bucchini, Thomas Hackl, Matthias G Fischer, Klaas Vandepoele, Denis V Tikhonenkov, Filip Husnik, Patrick J Keeling
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. The ISME journal 15 (1) (2020)
Andrea Del Cortona, Christopher J Jackson, François Bucchini, Michiel Van Bel, Sofie D'hondt, Pavel Škaloud, Charles F Delwiche, Andrew H Knoll, John A Raven, Heroen Verbruggen, Klaas Vandepoele, Olivier De Clerck, Frederik Leliaert
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the United States of America 117 (5) (2020)
Sheree Yau, Marc Krasovec, L Felipe Benites, Stephane Rombauts, Mathilde Poyet, Emmelien Vancaester, Jean-Marc Aury, Evelyne Derelle, Yves Desdevises, Marie-Line Escande, Nigel H Grimsley, Julie Guy, Hervé Moreau, Sophie Sanchez-Brosseau, Yves Van de Peer, Klaas Vandepoele, Sebastien Gourbiere, Gwenaël Piganeau
Virus-host coexistence in phytoplankton through the genomic lens. Science advances 6 (14) (2020)
Cristina Maria Osuna-Cruz, Gust Bilcke, Emmelien Vancaester, Sam De Decker, Atle M Bones, Per Winge, Nicole Poulsen, Petra Bulankova, Bram Verhelst, Sien Audoor, Darja Belisova, Aikaterini Pargana, Monia Teresa Russo, Frederike Stock, Emilio Cirri, Tore Brembu, Georg Pohnert, Gwenaël Piganeau, Maria Immacolata Ferrante, Thomas Mock, Lieven Sterck, Koen Sabbe, Lieven De Veylder, Wim Vyverman, Klaas Vandepoele
Author Correction: The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Nature communications 11 (1) (2020)
Cristina Maria Osuna-Cruz, Gust Bilcke, Emmelien Vancaester, Sam De Decker, Atle M Bones, Per Winge, Nicole Poulsen, Petra Bulankova, Bram Verhelst, Sien Audoor, Darja Belisova, Aikaterini Pargana, Monia Teresa Russo, Frederike Stock, Emilio Cirri, Tore Brembu, Georg Pohnert, Gwenaël Piganeau, Maria Immacolata Ferrante, Thomas Mock, Lieven Sterck, Koen Sabbe, Lieven De Veylder, Wim Vyverman, Klaas Vandepoele
The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Nature communications 11 (1) (2020)
Gust Bilcke, Koen Van den Berge, Sam De Decker, Eli Bonneure, Nicole Poulsen, Petra Bulankova, Cristina Maria Osuna-Cruz, Jack Dickenson, Koen Sabbe, Georg Pohnert, Klaas Vandepoele, Sven Mangelinckx, Lieven Clement, Lieven De Veylder, Wim Vyverman
Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta. The ISME journal 15 (2) (2020)
Shubhada R Kulkarni, D Marc Jones, Klaas Vandepoele
Enhanced Maps of Transcription Factor Binding Sites Improve Regulatory Networks Learned from Accessible Chromatin Data. Plant physiology 181 (2) (2019)
Nienke Besbrugge, Jelle Van Leene, Dominique Eeckhout, Bernard Cannoot, Shubhada R Kulkarni, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Michiel Bontinck, Stijn Aesaert, Francis Impens, Kris Gevaert, Daniёl Van Damme, Mieke Van Lijsebettens, Dirk Inzé, Klaas Vandepoele, Hilde Nelissen, Geert De Jaeger
GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants. Plant physiology 177 (2) (2018)
Zhen Gao, Anna Daneva, Yuliya Salanenka, Matthias Van Durme, Marlies Huysmans, Zongcheng Lin, Freya De Winter, Steffen Vanneste, Mansour Karimi, Jan Van de Velde, Klaas Vandepoele, Davy Van de Walle, Koen Dewettinck, Bart N Lambrecht, Moritz K. Nowack
KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis. Nature plants 4 (6) (2018)
Daniel Lang, Kristian Karsten Ullrich, Florent Murat, Jörg Fuchs, Jerry Jenkins, Fabian B Haas, Mathieu Piednoel, Heidrun Gundlach, Michiel Van Bel, Rabea Meyberg, Cristina Vives, Jordi Morata, Aikaterini Symeonidi, Manuel Hiss, Wellington Muchero, Yasuko Kamisugi, Omar Saleh, Guillaume Blanc, Eva L Decker, Nico van Gessel, Jane Grimwood, Richard D Hayes, Sean W Graham, Lee E Gunter, Stuart F McDaniel, Sebastian N W Hoernstein, Anders Larsson, Fay-Wei Li, Pierre-François Perroud, Jeremy Phillips, Priya Ranjan, Daniel S Rokshar, Carl J Rothfels, Lucas Schneider, Shengqiang Shu, Dennis W Stevenson, Fritz Thümmler, Michael Tillich, Juan C Villarreal Aguilar, Thomas Widiez, Gane Ka-Shu Wong, Ann Wymore, Yong Zhang, Andreas D Zimmer, Ralph S Quatrano, Klaus F X Mayer, David Goodstein, Josep M Casacuberta, Klaas Vandepoele, Ralf Reski, Andrew C Cuming, Gerald A Tuskan, Florian Maumus, Jérome Salse, Jeremy Schmutz, Stefan Andreas Rensing
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant journal : for cell and molecular biology 93 (3) (2018)
Xinhua Zhang, Aneta Ivanova, Klaas Vandepoele, Jordan Radomiljac, Jan Van de Velde, Oliver Berkowitz, Patrick Willems, Yue Xu, Sophia Ng, Olivier Van Aken, Owen Duncan, Botao Zhang, Veronique Storme, Kai Xun Chan, Dries Vaneechoutte, Barry James Pogson, Frank Van Breusegem, James Whelan, Inge De Clercq
The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a. Plant physiology 173 (3) (2017)
Jan Van de Velde, Michiel Van Bel, Dries Vaneechoutte, Klaas Vandepoele
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. Plant physiology 171 (4) (2016)
Elisabeth Veeckman, Tom Ruttink, Klaas Vandepoele
Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences. The Plant cell 28 (8) (2016)
Hilde Nelissen, Dominique Eeckhout, Kirin Demuynck, Geert Persiau, Alan Walton, Michiel van Bel, Marieke Vervoort, Jasper Candaele, Jolien De Block, Stijn Aesaert, Mieke Van Lijsebettens, Sofie Goormachtig, Klaas Vandepoele, Jelle Van Leene, Michael Muszynski, Kris Gevaert, Dirk Inzé, Geert De Jaeger
Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf. The Plant cell 27 (6) (2015)
Nathalie Gonzalez, Laurens Pauwels, Alexandra Baekelandt, Liesbeth De Milde, Jelle Van Leene, Nienke Besbrugge, Ken S Heyndrickx, Amparo Cuéllar Pérez, Astrid Nagels Durand, Rebecca De Clercq, Eveline Van De Slijke, Robin Vanden Bossche, Dominique Eeckhout, Kris Gevaert, Klaas Vandepoele, Geert De Jaeger, Alain Goossens, Dirk Inzé
A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis. The Plant cell 27 (8) (2015)
Feng Wang, Antonella Muto, Jan Van de Velde, Pia Neyt, Kristiina Himanen, Klaas Vandepoele, Mieke Van Lijsebettens
Functional Analysis of the Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development. Plant physiology 169 (3) (2015)
Aurine Verkest, Marina Byzova, Cindy Martens, Patrick Willems, Tom Verwulgen, Bram Slabbinck, Debbie Rombaut, Jan Van de Velde, Klaas Vandepoele, Evi Standaert, Marrit Peeters, Mieke Van Lijsebettens, Frank Van Breusegem, Marc De Block
Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes. Plant physiology 168 (4) (2015)
Ken S Heyndrickx, Jan Van de Velde, Congmao Wang, Detlef Weigel, Klaas Vandepoele
A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. The Plant cell 26 (10) (2014)
Jan Van de Velde, Ken S Heyndrickx, Klaas Vandepoele
Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis. The Plant cell 26 (7) (2014)
Jelle Van Leene, Dominique Eeckhout, Bernard Cannoot, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Leen Vercruysse, Maarten Dedecker, Aurine Verkest, Klaas Vandepoele, Lennart Martens, Erwin Witters, Kris Gevaert, Geert De Jaeger
An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes. Nature protocols 10 (1) (2014)

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Publication Activity (10 Years)

Top Topics

Top Venues

Klaas Vandepoele