Ruochi Zhang

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 20

Top Venues

Nature genetics

Nature methods

bioRxiv : the preprint server for biology

Genome research

Carnegie Mellon University

Tsinghua University (BSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Carnegie Mellon University Aug 01 2017

United States

Research Assistant :: Computational Biology

Education History

Tsinghua University Sep 01 2013 - Jun 10 2017

China

BSC :: Department of Automation

Publications

Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods 21 (5) (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
Author Correction: scGHOST: identifying single-cell 3D genome subcompartments. Nature methods (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics 56 (8) (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics 56 (8) (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics 56 (8) (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods 21 (5) (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods 21 (5) (2024)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics 56 (8) (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: identifying single-cell 3D genome subcompartments. Nature methods 21 (5) (2024)
Kyle Xiong, Ruochi Zhang, Jian Ma
scGHOST: Identifying single-cell 3D genome subcompartments. bioRxiv : the preprint server for biology (2023)
Tianming Zhou, Ruochi Zhang, Deyong Jia, Raymond T Doty, Adam D Munday, Daniel Gao, Li Xin, Janis L Abkowitz, Zhijun Duan, Jian Ma
Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells. bioRxiv : the preprint server for biology (2023)
Yihe Deng, Ruochi Zhang, Pan Xu, Jian Ma, Quanquan Gu
PhyGCN: Pre-trained Hypergraph Convolutional Neural Networks with Self-supervised Learning. bioRxiv : the preprint server for biology (2023)
Dechao Tian, Ruochi Zhang, Yang Zhang, Xiaopeng Zhu, Jian Ma
MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome. Genome research 30 (2) (2020)

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Publication Activity (10 Years)

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Ruochi Zhang