Ryo Nagao

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 34

Top Topics

Molecular Docking

Structural Basis

Binding Protein

Top Venues

The journal of physical chemistry. B

Nature communications

Photosynthesis research

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Taichi Hayase, Yuichiro Shimada, Tatsuya Mitomi, Ryo Nagao, Takumi Noguchi
Triplet Delocalization over the Reaction Center Chlorophylls in Photosystem II. The journal of physical chemistry. B (2023)
Alain Boussac, Miwa Sugiura, Makoto Nakamura, Ryo Nagao, Takumi Noguchi, Stefania Viola, Alfred William Rutherford, Julien Sellés
Absorption changes in Photosystem II in the Soret band region upon the formation of the chlorophyll cation radical [P D1 P D2 ] . Photosynthesis research (2023)
Ryo Nagao, Koji Kato, Tasuku Hamaguchi, Yoshifumi Ueno, Naoki Tsuboshita, Shota Shimizu, Miyu Furutani, Shigeki Ehira, Yoshiki Nakajima, Keisuke Kawakami, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Koji Yonekura, Jian Ren Shen
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nature communications 14 (1) (2023)
Ryo Nagao, Koji Kato, Tasuku Hamaguchi, Yoshifumi Ueno, Naoki Tsuboshita, Shota Shimizu, Miyu Furutani, Shigeki Ehira, Yoshiki Nakajima, Keisuke Kawakami, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Koji Yonekura, Jian Ren Shen
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nature communications 14 (1) (2023)
Taichi Hayase, Yuichiro Shimada, Tatsuya Mitomi, Ryo Nagao, Takumi Noguchi
Triplet Delocalization over the Reaction Center Chlorophylls in Photosystem II. The journal of physical chemistry. B 127 (8) (2023)
Taichi Hayase, Yuichiro Shimada, Tatsuya Mitomi, Ryo Nagao, Takumi Noguchi
Triplet Delocalization over the Reaction Center Chlorophylls in Photosystem II. The journal of physical chemistry. B 127 (8) (2023)
Ryo Nagao, Koji Kato, Tasuku Hamaguchi, Yoshifumi Ueno, Naoki Tsuboshita, Shota Shimizu, Miyu Furutani, Shigeki Ehira, Yoshiki Nakajima, Keisuke Kawakami, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Koji Yonekura, Jian Ren Shen
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nature communications 14 (1) (2023)
Taichi Hayase, Yuichiro Shimada, Tatsuya Mitomi, Ryo Nagao, Takumi Noguchi
Triplet Delocalization over the Reaction Center Chlorophylls in Photosystem II. The journal of physical chemistry. B 127 (8) (2023)
Yuichiro Shimada, Ayane Sugiyama, Ryo Nagao, Takumi Noguchi
Role of D1-Glu65 in Proton Transfer during Photosynthetic Water Oxidation in Photosystem II. The journal of physical chemistry. B 126 (41) (2022)
Tomoyuki Kobayashi, Yuichiro Shimada, Ryo Nagao, Takumi Noguchi
pH-Dependent Regulation of Electron Flow in Photosystem II by a Histidine Residue at the Stromal Surface. Biochemistry 61 (13) (2022)
Koji Kato, Ryo Nagao, Yoshifumi Ueno, Makio Yokono, Takehiro Suzuki, Tian-Yi Jiang, Naoshi Dohmae, Fusamichi Akita, Seiji Akimoto, Naoyuki Miyazaki, Jian Ren Shen
Structure of a tetrameric photosystem I from a glaucophyte alga Cyanophora paradoxa. Nature communications 13 (1) (2022)
Ko Imaizumi, Taishi Nishimura, Ryo Nagao, Keisuke Saito, Takeshi Nakano, Hiroshi Ishikita, Takumi Noguchi, Kentaro Ifuku
D139N mutation of PsbP enhances the oxygen-evolving activity of photosystem II through stabilized binding of a chloride ion. PNAS nexus 1 (3) (2022)
Koji Kato, Tasuku Hamaguchi, Ryo Nagao, Keisuke Kawakami, Yoshifumi Ueno, Takehiro Suzuki, Hiroko Uchida, Akio Murakami, Yoshiki Nakajima, Makio Yokono, Seiji Akimoto, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen
Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus . eLife 11 (2022)
Yuichiro Shimada, Takehiro Suzuki, Takumi Matsubara, Tomomi Kitajima-Ihara, Ryo Nagao, Naoshi Dohmae, Takumi Noguchi
Post-translational amino acid conversion in photosystem II as a possible origin of photosynthetic oxygen evolution. Nature communications 13 (1) (2022)
Ko Imaizumi, Taishi Nishimura, Ryo Nagao, Keisuke Saito, Takeshi Nakano, Hiroshi Ishikita, Takumi Noguchi, Kentaro Ifuku
D139N mutation of PsbP enhances the oxygen-evolving activity of photosystem II through stabilized binding of a chloride ion. PNAS nexus 1 (3) (2022)
Ryo Nagao, Koji Kato, Minoru Kumazawa, Kentaro Ifuku, Makio Yokono, Takehiro Suzuki, Naoshi Dohmae, Fusamichi Akita, Seiji Akimoto, Naoyuki Miyazaki, Jian Ren Shen
Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex. Nature communications 13 (1) (2022)
Yasutada Okamoto, Yuichiro Shimada, Ryo Nagao, Takumi Noguchi
Proton and Water Transfer Pathways in the S2 → S3 Transition of the Water-Oxidizing Complex in Photosystem II: Time-Resolved Infrared Analysis of the Effects of D1-N298A Mutation and NO3- Substitution. The journal of physical chemistry. B 125 (25) (2021)
Ryo Nagao, Makio Yokono, Ka-Ho Kato, Yoshifumi Ueno, Jian-Ren Shen, Seiji Akimoto
High-light modification of excitation-energy-relaxation processes in the green flagellate Euglena gracilis. Photosynthesis research 149 (3) (2021)
Ryo Nagao, Makio Yokono, Yoshifumi Ueno, Jian Ren Shen, Seiji Akimoto
Excitation-Energy Transfer and Quenching in Diatom PSI-FCPI upon P700 Cation Formation. The journal of physical chemistry. B 124 (8) (2020)
Ryo Nagao, Yoshifumi Ueno, Seiji Akimoto, Jian-Ren Shen
Effects of CO2 and temperature on photosynthetic performance in the diatom Chaetoceros gracilis. Photosynthesis research 146 (1-3) (2020)
Ryo Nagao, Makio Yokono, Yoshifumi Ueno, Jian Ren Shen, Seiji Akimoto
Reply to "Comment on 'Acidic pH-Induced Modification of Energy Transfer in Diatom Fucoxanthin Chlorophyll a/c-Binding Proteins'". The journal of physical chemistry. B 124 (46) (2020)
Ryo Nagao, Makio Yokono, Yoshifumi Ueno, Tian-Yi Jiang, Jian Ren Shen, Seiji Akimoto
pH-Induced Regulation of Excitation Energy Transfer in the Cyanobacterial Photosystem I Tetramer. The journal of physical chemistry. B 124 (10) (2020)
Ryo Nagao, Makio Yokono, Yoshifumi Ueno, Jian Ren Shen, Seiji Akimoto
Acidic pH-Induced Modification of Energy Transfer in Diatom Fucoxanthin Chlorophyll a/c-Binding Proteins. The journal of physical chemistry. B 124 (24) (2020)
Yuichiro Shimada, Tomomi Kitajima-Ihara, Ryo Nagao, Takumi Noguchi
Role of the O4 Channel in Photosynthetic Water Oxidation as Revealed by Fourier Transform Infrared Difference and Time-Resolved Infrared Analysis of the D1-S169A Mutant. The journal of physical chemistry. B 124 (8) (2020)
Yoshifumi Ueno, Ryo Nagao, Jian Ren Shen, Seiji Akimoto
Spectral Properties and Excitation Relaxation of Novel Fucoxanthin Chlorophyll a/c-Binding Protein Complexes. The journal of physical chemistry letters 10 (17) (2019)
Ryo Nagao, Yoshifumi Ueno, Makio Yokono, Jian-Ren Shen, Seiji Akimoto
Effects of excess light energy on excitation-energy dynamics in a pennate diatom Phaeodactylum tricornutum. Photosynthesis research 141 (3) (2019)
Ryo Nagao, Kohei Kagatani, Yoshifumi Ueno, Jian Ren Shen, Seiji Akimoto
Ultrafast Excitation Energy Dynamics in a Diatom Photosystem I-Antenna Complex: A Femtosecond Fluorescence Upconversion Study. The journal of physical chemistry. B 123 (12) (2019)
Ryo Nagao, Makio Yokono, Yoshifumi Ueno, Jian Ren Shen, Seiji Akimoto
pH-Sensing Machinery of Excitation Energy Transfer in Diatom PSI-FCPI Complexes. The journal of physical chemistry letters 10 (13) (2019)
Ryo Nagao, Makio Yokono, Yoshifumi Ueno, Jian-Ren Shen, Seiji Akimoto
Low-Energy Chlorophylls in Fucoxanthin Chlorophyll a/ c-Binding Protein Conduct Excitation Energy Transfer to Photosystem I in Diatoms. The journal of physical chemistry. B 123 (1) (2018)
Ryo Nagao, Yoshifumi Ueno, Fusamichi Akita, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Jian-Ren Shen
Biochemical characterization of photosystem I complexes having different subunit compositions of fucoxanthin chlorophyll a/c-binding proteins in the diatom Chaetoceros gracilis. Photosynthesis research 140 (2) (2018)