Naoshi Dohmae

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 40

Top Topics

Structural Basis

Cancer Stem Cells

Endoplasmic Reticulum

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Angewandte Chemie (International ed. in English)

Nature cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Takeshi Kaizuka, Takehiro Suzuki, Noriyuki Kishi, Kota Tamada, Manfred W Kilimann, Takehiko Ueyama, Masahiko Watanabe, Tomomi Shimogori, Hideyuki Okano, Naoshi Dohmae, Toru Takumi
Remodeling of the postsynaptic proteome in male mice and marmosets during synapse development. Nature communications 15 (1) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Takeshi Kaizuka, Takehiro Suzuki, Noriyuki Kishi, Kota Tamada, Manfred W Kilimann, Takehiko Ueyama, Masahiko Watanabe, Tomomi Shimogori, Hideyuki Okano, Naoshi Dohmae, Toru Takumi
Remodeling of the postsynaptic proteome in male mice and marmosets during synapse development. Nature communications 15 (1) (2024)
Yoko Chiba, Hideshi Ooka, Marie E Wintzer, Nao Tsunematsu, Toshihiko Nogawa, Takehiro Suzuki, Naoshi Dohmae, Ryuhei Nakamura
Rationalizing the Influence of the Binding Affinity on the Activity of Phosphoserine Phosphatases. Angewandte Chemie (International ed. in English) 63 (13) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Koji Kato, Tasuku Hamaguchi, Minoru Kumazawa, Yoshiki Nakajima, Kentaro Ifuku, Shunsuke Hirooka, Yuu Hirose, Shin-Ya Miyagishima, Takehiro Suzuki, Keisuke Kawakami, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen, Ryo Nagao
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Yoko Chiba, Hideshi Ooka, Marie E Wintzer, Nao Tsunematsu, Toshihiko Nogawa, Takehiro Suzuki, Naoshi Dohmae, Ryuhei Nakamura
Rationalizing the Influence of the Binding Affinity on the Activity of Phosphoserine Phosphatases. Angewandte Chemie (International ed. in English) 63 (13) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Takeshi Kaizuka, Takehiro Suzuki, Noriyuki Kishi, Kota Tamada, Manfred W Kilimann, Takehiko Ueyama, Masahiko Watanabe, Tomomi Shimogori, Hideyuki Okano, Naoshi Dohmae, Toru Takumi
Remodeling of the postsynaptic proteome in male mice and marmosets during synapse development. Nature communications 15 (1) (2024)
Yoko Chiba, Hideshi Ooka, Marie E Wintzer, Nao Tsunematsu, Toshihiko Nogawa, Takehiro Suzuki, Naoshi Dohmae, Ryuhei Nakamura
Rationalizing the Influence of the Binding Affinity on the Activity of Phosphoserine Phosphatases. Angewandte Chemie (International ed. in English) 63 (13) (2024)
Yoko Chiba, Hideshi Ooka, Marie E Wintzer, Nao Tsunematsu, Toshihiko Nogawa, Takehiro Suzuki, Naoshi Dohmae, Ryuhei Nakamura
Rationalizing the Influence of the Binding Affinity on the Activity of Phosphoserine Phosphatases. Angewandte Chemie (International ed. in English) (2024)
Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu
Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nature communications 15 (1) (2024)
Xuguang Jiang, Tadayuki Ogawa, Kento Yonezawa, Nobutaka Shimizu, Sotaro Ichinose, Takayuki Uchihashi, Wataru Nagaike, Toshio Moriya, Naruhiko Adachi, Masato Kawasaki, Naoshi Dohmae, Toshiya Senda, Nobutaka Hirokawa
The two-step cargo recognition mechanism of heterotrimeric kinesin. EMBO reports (2023)
Yutaka Furutani, Yoshinori Hirano, Mariko Toguchi, Shoko Higuchi, Xian-Yang Qin, Kaori Yanaka, Yumi Sato-Shiozaki, Nobuaki Takahashi, Marina Sakai, Pornparn Kongpracha, Takehiro Suzuki, Naoshi Dohmae, Mutsuko Kukimoto-Niino, Mikako Shirouzu, Shushi Nagamori, Harukazu Suzuki, Kaoru Kobayashi, Takahiro Masaki, Daisuke Koyama, Kazuma Sekiba, Motoyuki Otsuka, Kazuhiko Koike, Michinori Kohara, Soichi Kojima, Hideaki Kakeya, Tomokazu Matsuura
A small molecule iCDM-34 identified by in silico screening suppresses HBV DNA through activation of aryl hydrocarbon receptor. Cell death discovery 9 (1) (2023)
Ryo Nagao, Koji Kato, Tasuku Hamaguchi, Yoshifumi Ueno, Naoki Tsuboshita, Shota Shimizu, Miyu Furutani, Shigeki Ehira, Yoshiki Nakajima, Keisuke Kawakami, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Koji Yonekura, Jian Ren Shen
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nature communications 14 (1) (2023)
Ryo Nagao, Koji Kato, Tasuku Hamaguchi, Yoshifumi Ueno, Naoki Tsuboshita, Shota Shimizu, Miyu Furutani, Shigeki Ehira, Yoshiki Nakajima, Keisuke Kawakami, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Koji Yonekura, Jian Ren Shen
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nature communications 14 (1) (2023)
Yutaka Furutani, Yoshinori Hirano, Mariko Toguchi, Shoko Higuchi, Xian-Yang Qin, Kaori Yanaka, Yumi Sato-Shiozaki, Nobuaki Takahashi, Marina Sakai, Pornparn Kongpracha, Takehiro Suzuki, Naoshi Dohmae, Mutsuko Kukimoto-Niino, Mikako Shirouzu, Shushi Nagamori, Harukazu Suzuki, Kaoru Kobayashi, Takahiro Masaki, Daisuke Koyama, Kazuma Sekiba, Motoyuki Otsuka, Kazuhiko Koike, Michinori Kohara, Soichi Kojima, Hideaki Kakeya, Tomokazu Matsuura
A small molecule iCDM-34 identified by in silico screening suppresses HBV DNA through activation of aryl hydrocarbon receptor. Cell death discovery 9 (1) (2023)
Yoichiro Harada, Yu Mizote, Takehiro Suzuki, Akiyoshi Hirayama, Satsuki Ikeda, Mikako Nishida, Toru Hiratsuka, Ayaka Ueda, Yusuke Imagawa, Kento Maeda, Yuki Ohkawa, Junko Murai, Hudson H Freeze, Eiji Miyoshi, Shigeki Higashiyama, Heiichiro Udono, Naoshi Dohmae, Hideaki Tahara, Naoyuki Taniguchi
Metabolic clogging of mannose triggers dNTP loss and genomic instability in human cancer cells. eLife 12 (2023)
Xian-Yang Qin, Yutaka Furutani, Kento Yonezawa, Nobutaka Shimizu, Miyuki Kato-Murayama, Mikako Shirouzu, Yali Xu, Yumiko Yamano, Akimori Wada, Luc Gailhouste, Rajan Shrestha, Masataka Takahashi, Jeffrey W Keillor, Ting Su, Wenkui Yu, Shinya Fujii, Hiroyuki Kagechika, Naoshi Dohmae, Yohei Shirakami, Masahito Shimizu, Takahiro Masaki, Tomokazu Matsuura, Harukazu Suzuki, Soichi Kojima
Targeting transglutaminase 2 mediated exostosin glycosyltransferase 1 signaling in liver cancer stem cells with acyclic retinoid. Cell death & disease 14 (6) (2023)
Ryoya Nakagawa, Hisato Hirano, Satoshi N Omura, Suchita P Nety, Soumya Kannan, Han Altae-Tran, Xiao Yao, Yuriko Sakaguchi, Takayuki Ohira, Wen Y Wu, Hiroshi Nakayama, Yutaro Shuto, Tatsuki Tanaka, Fumiya K Sano, Tsukasa Kusakizako, Yoshiaki Kise, Yuzuru Itoh, Naoshi Dohmae, John van der Oost, Tsutomu Suzuki, Feng Zhang, Osamu Nureki
Cryo-EM structure of the transposon-associated TnpB enzyme. Nature (2023)
Yoshihiko Kuchitsu, Kojiro Mukai, Rei Uematsu, Yuki Takaada, Ayumi Shinojima, Ruri Shindo, Tsumugi Shoji, Shiori Hamano, Emari Ogawa, Ryota Sato, Kensuke Miyake, Akihisa Kato, Kawaguchi Yasushi, Masahiko Nishitani-Isa, Kazushi Izawa, Ryuta Nishikomori, Takahiro Yasumi, Takehiro Suzuki, Naoshi Dohmae, Takefumi Uemura, Glen N Barber, Hiroyuki Arai, Satoshi Waguri, Tomohiko Taguchi
STING signalling is terminated through ESCRT-dependent microautophagy of vesicles originating from recycling endosomes. Nature cell biology 25 (3) (2023)
Yoshihiko Kuchitsu, Kojiro Mukai, Rei Uematsu, Yuki Takaada, Ayumi Shinojima, Ruri Shindo, Tsumugi Shoji, Shiori Hamano, Emari Ogawa, Ryota Sato, Kensuke Miyake, Akihisa Kato, Kawaguchi Yasushi, Masahiko Nishitani-Isa, Kazushi Izawa, Ryuta Nishikomori, Takahiro Yasumi, Takehiro Suzuki, Naoshi Dohmae, Takefumi Uemura, Glen N Barber, Hiroyuki Arai, Satoshi Waguri, Tomohiko Taguchi
STING signalling is terminated through ESCRT-dependent microautophagy of vesicles originating from recycling endosomes. Nature cell biology 25 (3) (2023)
Yoshihiko Kuchitsu, Kojiro Mukai, Rei Uematsu, Yuki Takaada, Ayumi Shinojima, Ruri Shindo, Tsumugi Shoji, Shiori Hamano, Emari Ogawa, Ryota Sato, Kensuke Miyake, Akihisa Kato, Kawaguchi Yasushi, Masahiko Nishitani-Isa, Kazushi Izawa, Ryuta Nishikomori, Takahiro Yasumi, Takehiro Suzuki, Naoshi Dohmae, Takefumi Uemura, Glen N Barber, Hiroyuki Arai, Satoshi Waguri, Tomohiko Taguchi
STING signalling is terminated through ESCRT-dependent microautophagy of vesicles originating from recycling endosomes. Nature cell biology 25 (3) (2023)
Yoshihiko Kuchitsu, Kojiro Mukai, Rei Uematsu, Yuki Takaada, Ayumi Shinojima, Ruri Shindo, Tsumugi Shoji, Shiori Hamano, Emari Ogawa, Ryota Sato, Kensuke Miyake, Akihisa Kato, Kawaguchi Yasushi, Masahiko Nishitani-Isa, Kazushi Izawa, Ryuta Nishikomori, Takahiro Yasumi, Takehiro Suzuki, Naoshi Dohmae, Takefumi Uemura, Glen N Barber, Hiroyuki Arai, Satoshi Waguri, Tomohiko Taguchi
STING signalling is terminated through ESCRT-dependent microautophagy of vesicles originating from recycling endosomes. Nature cell biology 25 (3) (2023)
Ryo Nagao, Koji Kato, Tasuku Hamaguchi, Yoshifumi Ueno, Naoki Tsuboshita, Shota Shimizu, Miyu Furutani, Shigeki Ehira, Yoshiki Nakajima, Keisuke Kawakami, Takehiro Suzuki, Naoshi Dohmae, Seiji Akimoto, Koji Yonekura, Jian Ren Shen
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nature communications 14 (1) (2023)
Masaki Kikuchi, Satoshi Morita, Masatoshi Wakamori, Shin Sato, Tomomi Uchikubo-Kamo, Takehiro Suzuki, Naoshi Dohmae, Mikako Shirouzu, Takashi Umehara
Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nature communications 14 (1) (2023)
Woojoo E Kim, Fumihiro Ishikawa, Rebecca N Re, Takehiro Suzuki, Naoshi Dohmae, Hideaki Kakeya, Genzoh Tanabe, Michael D Burkart
Developing crosslinkers specific for epimerization domain in NRPS initiation modules to evaluate mechanism. RSC chemical biology 3 (3) (2022)
Koji Kato, Ryo Nagao, Yoshifumi Ueno, Makio Yokono, Takehiro Suzuki, Tian-Yi Jiang, Naoshi Dohmae, Fusamichi Akita, Seiji Akimoto, Naoyuki Miyazaki, Jian Ren Shen
Structure of a tetrameric photosystem I from a glaucophyte alga Cyanophora paradoxa. Nature communications 13 (1) (2022)
Koji Kato, Tasuku Hamaguchi, Ryo Nagao, Keisuke Kawakami, Yoshifumi Ueno, Takehiro Suzuki, Hiroko Uchida, Akio Murakami, Yoshiki Nakajima, Makio Yokono, Seiji Akimoto, Naoshi Dohmae, Koji Yonekura, Jian Ren Shen
Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus . eLife 11 (2022)
Eriko Matsuura-Suzuki, Tadahiro Shimazu, Mari Takahashi, Kaoru Kotoshiba, Takehiro Suzuki, Kazuhiro Kashiwagi, Yoshihiro Sohtome, Mai Akakabe, Mikiko Sodeoka, Naoshi Dohmae, Takuhiro Ito, Yoichi Shinkai, Shintaro Iwasaki
METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance. eLife 11 (2022)
Yuichiro Shimada, Takehiro Suzuki, Takumi Matsubara, Tomomi Kitajima-Ihara, Ryo Nagao, Naoshi Dohmae, Takumi Noguchi
Post-translational amino acid conversion in photosystem II as a possible origin of photosynthetic oxygen evolution. Nature communications 13 (1) (2022)
Ryo Nagao, Koji Kato, Minoru Kumazawa, Kentaro Ifuku, Makio Yokono, Takehiro Suzuki, Naoshi Dohmae, Fusamichi Akita, Seiji Akimoto, Naoyuki Miyazaki, Jian Ren Shen
Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex. Nature communications 13 (1) (2022)
Hayato Mizuta, Ayane Takakusaki, Takehiro Suzuki, Keisuke Otake, Naoshi Dohmae, Siro Simizu
C-mannosylation regulates stabilization of RAMP1 protein and RAMP1-mediated cell migration. The FEBS journal (2022)
Yuhta Nomura, Naoshi Dohmae
Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans. Communications biology 4 (1) (2021)
Takefumi Uemura, Takehiro Suzuki, Naoshi Dohmae, Satoshi Waguri
Clathrin adapters AP-1 and GGA2 support expression of epidermal growth factor receptor for cell growth. Oncogenesis 10 (11) (2021)
Reina Nagamura, Masahiro Fukuda, Akihiro Kawamoto, Kyoko Matoba, Naoshi Dohmae, Ryuichiro Ishitani, Junichi Takagi, Osamu Nureki
Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2. Acta crystallographica. Section F, Structural biology communications 75 (Pt 5) (2019)