Ryuichiro Nakato (Ryoichiro Nakato)

Researcher Name Resolver ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 20

Top Topics

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Top Venues

Science advances

Genes to cells : devoted to molecular & cellular mechanisms

Nature communications

DNA research : an international journal for rapid publication of reports on genes and genomes

This page only lists publications with an associated author ORCID identifier.

Publications

Gina Miku Oba, Ryuichiro Nakato
Clover: An unbiased method for prioritizing differentially expressed genes using a data-driven approach. Genes to cells : devoted to molecular & cellular mechanisms 29 (6) (2024)
Gina Miku Oba, Ryuichiro Nakato
Clover: An unbiased method for prioritizing differentially expressed genes using a data-driven approach. Genes to cells : devoted to molecular & cellular mechanisms 29 (6) (2024)
Jiankang Wang, Ryuichiro Nakato
Churros: a Docker-based pipeline for large-scale epigenomic analysis. DNA research : an international journal for rapid publication of reports on genes and genomes 31 (1) (2024)
Shun Shibata, Shun Endo, Luis A E Nagai, Eri H Kobayashi, Akira Oike, Norio Kobayashi, Akane Kitamura, Takeshi Hori, Yuji Nashimoto, Ryuichiro Nakato, Hirotaka Hamada, Hirokazu Kaji, Chie Kikutake, Mikita Suyama, Masatoshi Saito, Nobuo Yaegashi, Hiroaki Okae, Takahiro Arima
Modeling embryo-endometrial interface recapitulating human embryo implantation. Science advances 10 (8) (2024)
Gina Miku Oba, Ryuichiro Nakato
Clover: An unbiased method for prioritizing differentially expressed genes using a data-driven approach. Genes to cells : devoted to molecular & cellular mechanisms (2024)
Gina Miku Oba, Ryuichiro Nakato
Clover: An unbiased method for prioritizing differentially expressed genes using a data-driven approach. Genes to cells : devoted to molecular & cellular mechanisms 29 (6) (2024)
Shun Shibata, Shun Endo, Luis A E Nagai, Eri H Kobayashi, Akira Oike, Norio Kobayashi, Akane Kitamura, Takeshi Hori, Yuji Nashimoto, Ryuichiro Nakato, Hirotaka Hamada, Hirokazu Kaji, Chie Kikutake, Mikita Suyama, Masatoshi Saito, Nobuo Yaegashi, Hiroaki Okae, Takahiro Arima
Modeling embryo-endometrial interface recapitulating human embryo implantation. Science advances 10 (8) (2024)
Shun Shibata, Shun Endo, Luis A E Nagai, Eri H Kobayashi, Akira Oike, Norio Kobayashi, Akane Kitamura, Takeshi Hori, Yuji Nashimoto, Ryuichiro Nakato, Hirotaka Hamada, Hirokazu Kaji, Chie Kikutake, Mikita Suyama, Masatoshi Saito, Nobuo Yaegashi, Hiroaki Okae, Takahiro Arima
Modeling embryo-endometrial interface recapitulating human embryo implantation. Science advances 10 (8) (2024)
Jiankang Wang, Ryuichiro Nakato
Churros: A docker-based pipeline for large-scale epigenomic analysis. DNA research : an international journal for rapid publication of reports on genes and genomes (2023)
Ryuichiro Nakato, Toyonori Sakata, Jiankang Wang, Luis Augusto Eijy Nagai, Yuya Nagaoka, Gina Miku Oba, Masashige Bando, Katsuhiko Shirahige
Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors. Nature communications 14 (1) (2023)
Masashi Hada, Hisashi Miura, Akie Tanigawa, Shogo Matoba, Kimiko Inoue, Narumi Ogonuki, Michiko Hirose, Naomi Watanabe, Ryuichiro Nakato, Katsunori Fujiki, Ayumi Hasegawa, Akihiko Sakashita, Hiroaki Okae, Kento Miura, Daiki Shikata, Takahiro Arima, Katsuhiko Shirahige, Ichiro Hiratani, Atsuo Ogura
Highly rigid H3.1/H3.2-H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells. Genes & development 36 (1-2) (2022)
Ayako Kawabata, Tomoatsu Hayashi, Yoko Akasu-Nagayoshi, Ai Yamada, Naomi Shimizu, Naoko Yokota, Ryuichiro Nakato, Katsuhiko Shirahige, Aikou Okamoto, Tetsu Akiyama
CRISPR/Cas9 Screening for Identification of Genes Required for the Growth of Ovarian Clear Cell Carcinoma Cells. Current issues in molecular biology 44 (4) (2022)
Mitsuaki Fujimoto, Ryosuke Takii, Masaki Matsumoto, Mariko Okada, Keiichi I Nakayama, Ryuichiro Nakato, Katsunori Fujiki, Katsuhiko Shirahige, Akira Nakai
HSF1 phosphorylation establishes an active chromatin state via the TRRAP-TIP60 complex and promotes tumorigenesis. Nature communications 13 (1) (2022)
Kristian Jeppsson, Toyonori Sakata, Ryuichiro Nakato, Stefina Milanova, Katsuhiko Shirahige, Camilla Björkegren
Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks. Science advances 8 (23) (2022)
Jiankang Wang, Masashige Bando, Katsuhiko Shirahige, Ryuichiro Nakato
Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation. Nature communications 13 (1) (2022)
Shinya Tanaka, Wataru Ise, Takeshi Inoue, Ayako Ito, Chisato Ono, Yoshihito Shima, Shuhei Sakakibara, Manabu Nakayama, Kentaro Fujii, Ikuo Miura, Jafar Sharif, Haruhiko Koseki, Pandelakis A Koni, Indu Raman, Quan-Zhen Li, Masato Kubo, Katsunori Fujiki, Ryuichiro Nakato, Katsuhiko Shirahige, Hiromitsu Araki, Fumihito Miura, Takashi Ito, Eiryo Kawakami, Yoshihiro Baba, Tomohiro Kurosaki
Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity. Nature immunology 21 (8) (2020)
Soya Shinkai, Masaki Nakagawa, Takeshi Sugawara, Yuichi Togashi, Hiroshi Ochiai, Ryuichiro Nakato, Yuichi Taniguchi, Shuichi Onami
PHi-C: deciphering Hi-C data into polymer dynamics. NAR genomics and bioinformatics 2 (2) (2020)
Ryuichiro Nakato, Youichiro Wada, Ryo Nakaki, Genta Nagae, Yuki Katou, Shuichi Tsutsumi, Natsu Nakajima, Hiroshi Fukuhara, Atsushi Iguchi, Takahide Kohro, Yasuharu Kanki, Yutaka Saito, Mika Kobayashi, Akashi Izumi-Taguchi, Naoki Osato, Kenji Tatsuno, Asuka Kamio, Yoko Hayashi-Takanaka, Hiromi Wada, Shinzo Ohta, Masanori Aikawa, Hiroyuki Nakajima, Masaki Nakamura, Rebecca C McGee, Kyle W Heppner, Tatsuo Kawakatsu, Michiru Genno, Hiroshi Yanase, Haruki Kume, Takaaki Senbonmatsu, Yukio Homma, Shigeyuki Nishimura, Toutai Mitsuyama, Hiroyuki Aburatani, Hiroshi Kimura, Katsuhiko Shirahige
Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells. Epigenetics & chromatin 12 (1) (2019)
Shogo Ueda, Ingrid Rosenburg Cordeiro, Yuuta Moriyama, Chika Nishimori, Kei-Ichi Kai, Reiko Yu, Ryuichiro Nakato, Katsuhiko Shirahige, Mikiko Tanaka
Cux2 refines the forelimb field by controlling expression of Raldh2 and Hox genes. Biology open 8 (2) (2019)
Satoshi Murakami, Maki Minami-Ohtsubo, Ryuichiro Nakato, Katsuhiko Shirahige, Tetsuya Tabata
Two Components of Aversive Memory in Drosophila, Anesthesia-Sensitive and Anesthesia-Resistant Memory, Require Distinct Domains Within the Rgk1 Small GTPase. The Journal of neuroscience : the official journal of the Society for Neuroscience 37 (22) (2017)