Yuichi Togashi

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 11

Top Topics

Molecular Dynamics Simulations

Top Venues

The journal of physical chemistry. B

PLoS computational biology

International journal of molecular sciences

Science signaling

This page only lists publications with an associated author ORCID identifier.

Publications

Radek Erban, Yuichi Togashi
Asymmetric Periodic Boundary Conditions for All-Atom Molecular Dynamics and Coarse-Grained Simulations of Nucleic Acids. The journal of physical chemistry. B (2023)
Yoshihiko Fujita, Takeru Kameda, Chingakham Ranjit Singh, Whitney Pepper, Ariana Cecil, Madelyn Hilgers, Mackenzie Thornton, Izumi Asano, Carter Moravek, Yuichi Togashi, Hirohide Saito, Katsura Asano
Translational recoding by chemical modification of non-AUG start codon ribonucleotide bases. Science advances 8 (14) (2022)
Takeru Kameda, Katsura Asano, Yuichi Togashi
Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex. PLoS computational biology 17 (6) (2021)
Soya Shinkai, Masaki Nakagawa, Takeshi Sugawara, Yuichi Togashi, Hiroshi Ochiai, Ryuichiro Nakato, Yuichi Taniguchi, Shuichi Onami
PHi-C: deciphering Hi-C data into polymer dynamics. NAR genomics and bioinformatics 2 (2) (2020)
Yuichi Togashi
Modeling of Nanomachine/Micromachine Crowds: Interplay between the Internal State and Surroundings. The journal of physical chemistry. B 123 (7) (2019)
Romain Amyot, Yuichi Togashi, Holger Flechsig
Analyzing Fluctuation Properties in Protein Elastic Networks with Sequence-Specific and Distance-Dependent Interactions. Biomolecules 9 (10) (2019)
Holger Flechsig, Yuichi Togashi
Designed Elastic Networks: Models of Complex Protein Machinery. International journal of molecular sciences 19 (10) (2018)
Masataka Yanagawa, Michio Hiroshima, Yuichi Togashi, Mitsuhiro Abe, Takahiro Yamashita, Yoshinori Shichida, Masayuki Murata, Masahiro Ueda, Yasushi Sako
Single-molecule diffusion-based estimation of ligand effects on G protein-coupled receptors. Science signaling 11 (548) (2018)
Yuichi Togashi, Holger Flechsig
Coarse-Grained Protein Dynamics Studies Using Elastic Network Models. International journal of molecular sciences 19 (12) (2018)
Soya Shinkai, Tadasu Nozaki, Kazuhiro Maeshima, Yuichi Togashi
Bridging the dynamics and organization of chromatin domains by mathematical modeling. Nucleus (Austin, Tex.) 8 (4) (2017)
Soya Shinkai, Tadasu Nozaki, Kazuhiro Maeshima, Yuichi Togashi
Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells. PLoS computational biology 12 (10) (2016)