Hiroshi Ochiai

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 19

Top Venues

Nature communications

Nucleic acids research

bioRxiv : the preprint server for biology

The EMBO journal

Hiroshima University

Hiroshima University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Hiroshima University Apr 01 2019

Japan

Lecturer :: Graduate School of Integrated Sciences for Life

Japan Science and Technology Agency Oct 01 2015 - Mar 31 2019

Japan

PRESTO researcher :: Graduate school of Science, Hiroshima University

Hiroshima University Apr 01 2013 - Sep 30 2015

Japan

Lecturer (Special Appointment) :: Research Center for the Mathematics on Chromatin Live Dynamics (RcMcD)

Hiroshima University Jun 01 2012 - Mar 30 2013

Japan

Assistant Professor :: Research Institute for Radiation Biology and Medicine

Hiroshima University Apr 01 2011 - May 30 2012

Japan

JSPS Research Fellow (PD) :: Reseach Institute for Radiation Biology and Medicine

Hiroshima University Apr 01 2009 - Mar 30 2011

Japan

JSPS Research Fellow (DC2) :: Department of Mathematical and Life Sciences

Education History

Hiroshima University Apr 01 2008 - Mar 30 2011

Japan

PHD :: Department of Mathematical and Life Sciences

Publications

Ximena Garate, Pablo Aurelio Gómez-García, Manuel Fernández Merino, Marta Cadevall Angles, Chenggan Zhu, Alvaro Castells-García, Ilyas Ed-Daoui, Laura Martin, Hiroshi Ochiai, Maria Victoria Neguembor, Maria Pia Cosma
The relationship between nanoscale genome organization and gene expression in mouse embryonic stem cells during pluripotency transition. Nucleic acids research 52 (14) (2024)
Ximena Garate, Pablo Aurelio Gómez-García, Manuel Fernández Merino, Marta Cadevall Angles, Chenggan Zhu, Alvaro Castells-García, Ilyas Ed-Daoui, Laura Martin, Hiroshi Ochiai, Maria Victoria Neguembor, Maria Pia Cosma
The relationship between nanoscale genome organization and gene expression in mouse embryonic stem cells during pluripotency transition. Nucleic acids research 52 (14) (2024)
Kosuke Tomimatsu, Takeru Fujii, Ryoma Bise, Kazufumi Hosoda, Yosuke Taniguchi, Hiroshi Ochiai, Hiroaki Ohishi, Kanta Ando, Ryoma Minami, Kaori Tanaka, Taro Tachibana, Seiichi Mori, Akihito Harada, Kazumitsu Maehara, Masao Nagasaki, Seiichi Uchida, Hitoshi Kurumizaka, Masashi Narita, Yasuyuki Ohkawa
Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states. Nature communications 15 (1) (2024)
Kosuke Tomimatsu, Takeru Fujii, Ryoma Bise, Kazufumi Hosoda, Yosuke Taniguchi, Hiroshi Ochiai, Hiroaki Ohishi, Kanta Ando, Ryoma Minami, Kaori Tanaka, Taro Tachibana, Seiichi Mori, Akihito Harada, Kazumitsu Maehara, Masao Nagasaki, Seiichi Uchida, Hitoshi Kurumizaka, Masashi Narita, Yasuyuki Ohkawa
Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states. Nature communications 15 (1) (2024)
Yosuke Yoneyama, Ran-Ran Zhang, Masaki Kimura, Yuqi Cai, Mike Adam, Sreeja Parameswaran, Hideki Masaki, Naoaki Mizuno, Joydeep Bhadury, So Maezawa, Hiroshi Ochiai, Hiromitsu Nakauchi, S Steven Potter, Matthew T Weirauch, Takanori Takebe
Inter-cellular mRNA Transfer Alters Human Pluripotent Stem Cell State. bioRxiv : the preprint server for biology (2024)
Ximena Garate, Pablo Aurelio Gómez-García, Manuel Fernández Merino, Marta Cadevall Angles, Chenggan Zhu, Alvaro Castells-García, Ilyas Ed-Daoui, Laura Martin, Hiroshi Ochiai, Maria Victoria Neguembor, Maria Pia Cosma
The relationship between nanoscale genome organization and gene expression in mouse embryonic stem cells during pluripotency transition. Nucleic acids research (2024)
Yosuke Yoneyama, Ran-Ran Zhang, Masaki Kimura, Yuqi Cai, Mike Adam, Sreeja Parameswaran, Hideki Masaki, Naoaki Mizuno, Joydeep Bhadury, So Maezawa, Hiroshi Ochiai, Hiromitsu Nakauchi, S Steven Potter, Matthew T Weirauch, Takanori Takebe
Inter-cellular mRNA Transfer Alters Human Pluripotent Stem Cell State. bioRxiv : the preprint server for biology (2024)
Kosuke Tomimatsu, Takeru Fujii, Ryoma Bise, Kazufumi Hosoda, Yosuke Taniguchi, Hiroshi Ochiai, Hiroaki Ohishi, Kanta Ando, Ryoma Minami, Kaori Tanaka, Taro Tachibana, Seiichi Mori, Akihito Harada, Kazumitsu Maehara, Masao Nagasaki, Seiichi Uchida, Hitoshi Kurumizaka, Masashi Narita, Yasuyuki Ohkawa
Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states. Nature communications 15 (1) (2024)
Hiroaki Ohishi, Seiru Shimada, Satoshi Uchino, Jieru Li, Yuko Sato, Manabu Shintani, Hitoshi Owada, Yasuyuki Ohkawa, Alexandros Pertsinidis, Takashi Yamamoto, Hitoshi Kurumizaka, Hiroshi Ochiai
STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity. Nature communications 13 (1) (2022)
Haruka Matsumori, Kenji Watanabe, Hiroaki Tachiwana, Tomoko Fujita, Yuma Ito, Makio Tokunaga, Kumiko Sakata-Sogawa, Hiroko Osakada, Tokuko Haraguchi, Akinori Awazu, Hiroshi Ochiai, Yuka Sakata, Koji Ochiai, Tsutomu Toki, Etsuro Ito, Ilya G Goldberg, Kazuaki Tokunaga, Mitsuyoshi Nakao, Noriko Saitoh
Ribosomal protein L5 facilitates rDNA-bundled condensate and nucleolar assembly. Life science alliance 5 (7) (2022)
Hiroaki Ohishi, Seiru Shimada, Satoshi Uchino, Jieru Li, Yuko Sato, Manabu Shintani, Hitoshi Owada, Yasuyuki Ohkawa, Alexandros Pertsinidis, Takashi Yamamoto, Hitoshi Kurumizaka, Hiroshi Ochiai
STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity. Nature communications 13 (1) (2022)
Hiroaki Ohishi, Seiru Shimada, Satoshi Uchino, Jieru Li, Yuko Sato, Manabu Shintani, Hitoshi Owada, Yasuyuki Ohkawa, Alexandros Pertsinidis, Takashi Yamamoto, Hitoshi Kurumizaka, Hiroshi Ochiai
STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity. Nature communications 13 (1) (2022)
Hiroaki Ohishi, Seiru Shimada, Satoshi Uchino, Jieru Li, Yuko Sato, Manabu Shintani, Hitoshi Owada, Yasuyuki Ohkawa, Alexandros Pertsinidis, Takashi Yamamoto, Hitoshi Kurumizaka, Hiroshi Ochiai
STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity. Nature communications 13 (1) (2022)
Hiroaki Ohishi, Seiru Shimada, Satoshi Uchino, Jieru Li, Yuko Sato, Manabu Shintani, Hitoshi Owada, Yasuyuki Ohkawa, Alexandros Pertsinidis, Takashi Yamamoto, Hitoshi Kurumizaka, Hiroshi Ochiai
STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity. Nature communications 13 (1) (2022)
Jieru Li, Angela Hsu, Yujing Hua, Guanshi Wang, Lingling Cheng, Hiroshi Ochiai, Takashi Yamamoto, Alexandros Pertsinidis
Single-gene imaging links genome topology, promoter-enhancer communication and transcription control. Nature structural & molecular biology 27 (11) (2020)
Soya Shinkai, Masaki Nakagawa, Takeshi Sugawara, Yuichi Togashi, Hiroshi Ochiai, Ryuichiro Nakato, Yuichi Taniguchi, Shuichi Onami
PHi-C: deciphering Hi-C data into polymer dynamics. NAR genomics and bioinformatics 2 (2) (2020)
Tatsuo Miyamoto, Kosuke Hosoba, Takeshi Itabashi, Atsuko H Iwane, Silvia Natsuko Akutsu, Hiroshi Ochiai, Yumiko Saito, Takashi Yamamoto, Shinya Matsuura
Insufficiency of ciliary cholesterol in hereditary Zellweger syndrome. The EMBO journal 39 (12) (2020)
Hiroshi Ochiai, Tetsutaro Hayashi, Mana Umeda, Mika Yoshimura, Akihito Harada, Yukiko Shimizu, Kenta Nakano, Noriko Saitoh, Zhe J Liu, Takashi Yamamoto, Tadashi Okamura, Yasuyuki Ohkawa, Hitoshi Kurumizaka, Itoshi Nikaido
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. Science advances 6 (25) (2020)
Sungrim Seirin-Lee, Fumitaka Osakada, Junichi Takeda, Satoshi Tashiro, Ryo Kobayashi, Takashi Yamamoto, Hiroshi Ochiai
Role of dynamic nuclear deformation on genomic architecture reorganization. PLoS computational biology 15 (9) (2019)

Hiroshi Ochiai.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Hiroshi Ochiai