Sam Kovaka

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 8

Top Venues

bioRxiv : the preprint server for biology

Nature biotechnology

Johns Hopkins University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Johns Hopkins University

United States

PhD Student :: Computer Science

Publications

Sam Kovaka, Paul W Hook, Katharine M Jenike, Vikram S Shivakumar, Luke B Morina, Roham Razaghi, Winston Timp, Michael C Schatz
Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment. bioRxiv : the preprint server for biology (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Sam Kovaka, Paul W Hook, Katharine M Jenike, Vikram S Shivakumar, Luke B Morina, Roham Razaghi, Winston Timp, Michael C Schatz
Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment. bioRxiv : the preprint server for biology (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Vikram S Shivakumar, Omar Y Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
Sigmoni: classification of nanopore signal with a compressed pangenome index. bioRxiv : the preprint server for biology (2023)
Sam Kovaka, Yunfan Fan, Bohan Ni, Winston Timp, Michael C Schatz
Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED. Nature biotechnology 39 (4) (2020)

Sam Kovaka.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Sam Kovaka