Omar Y Ahmed (Omar Ahmed)

Publication Activity (10 Years)

Years Active: 2023-2024
Publications (10 Years): 13

Top Topics

Pluripotent Stem Cells

Respiratory Syndrome Coronavirus

Machine Learning

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Vikram S Shivakumar, Omar Y Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
Sigmoni: classification of nanopore signal with a compressed pangenome index. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Vikram S Shivakumar, Omar Y Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
Sigmoni: classification of nanopore signal with a compressed pangenome index. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Vikram S Shivakumar, Omar Y Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
Sigmoni: classification of nanopore signal with a compressed pangenome index. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Omar Y Ahmed, Christina Boucher, Ben Langmead
Cliffy: robust 16S rRNA classification based on a compressed LCA index. bioRxiv : the preprint server for biology (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Vikram S Shivakumar, Omar Y Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
Sigmoni: classification of nanopore signal with a compressed pangenome index. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Stephen Hwang, Nathaniel K Brown, Omar Y Ahmed, Katharine M Jenike, Sam Kovaka, Michael C Schatz, Ben Langmead
MEM-based pangenome indexing for k -mer queries. bioRxiv : the preprint server for biology (2024)
Vikram S Shivakumar, Omar Y Ahmed, Sam Kovaka, Mohsen Zakeri, Ben Langmead
Sigmoni: classification of nanopore signal with a compressed pangenome index. bioRxiv : the preprint server for biology (2023)
Jessica K Bonnie, Omar Y Ahmed, Ben Langmead
DandD: efficient measurement of sequence growth and similarity. bioRxiv : the preprint server for biology (2023)
Mohsen Zakeri, Nathaniel K Brown, Omar Y Ahmed, Travis Gagie, Ben Langmead
Movi: a fast and cache-efficient full-text pangenome index. bioRxiv : the preprint server for biology (2023)
Jessica K Bonnie, Omar Y Ahmed, Ben Langmead
DandD: efficient measurement of sequence growth and similarity. bioRxiv : the preprint server for biology (2023)