Santiago F Elena

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 60

Top Venues

Viruses

Virus evolution

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Communications biology

Santa Fe Institute

Universitat de València (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Santa Fe Institute Jul 01 2008

United States

External Faculty

Consejo Superior de Investigaciones Científicas Jul 01 2002

Spain

Professor :: IBMCP

Universitat de València Jan 01 1998 - Jun 30 2002

Spain

Assistant/Associate Professor :: Institut Cavanilles de Biodiversitat i Biologia Evolutiva

Michigan State University Oct 01 1995 - Dec 22 1997

United States

Postdoctoral Researcher :: Center for Microbial Ecology

Education History

Universitat de València Oct 01 1991 - Sep 30 1995

Spain

PHD :: Genetics

Universitat de València Oct 01 1985 - Jul 01 1990

Spain

MSC

Publications

Pau Alfonso, Anamarija Butković, Rosa Fernández, Ana Riesgo, Santiago F Elena
Unveiling the hidden viromes across the animal tree of life: insights from a taxonomic classification pipeline applied to invertebrates of 31 metazoan phyla. mSystems 9 (5) (2024)
Pau Alfonso, Anamarija Butković, Rosa Fernández, Ana Riesgo, Santiago F Elena
Unveiling the hidden viromes across the animal tree of life: insights from a taxonomic classification pipeline applied to invertebrates of 31 metazoan phyla. mSystems 9 (5) (2024)
Victoria G Castiglioni, Santiago F Elena
Orsay virus infection increases Caenorhabditis elegans resistance to heat-shock. Biology letters 20 (8) (2024)
Anamarija Butkovic, Thomas James Ellis, Ruben Gonzalez, Benjamin Jaegle, Magnus Nordborg, Santiago F Elena
Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus. eLife 12 (2024)
Anamarija Butkovic, Thomas James Ellis, Ruben Gonzalez, Benjamin Jaegle, Magnus Nordborg, Santiago F Elena
Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus. eLife 12 (2024)
Julia Hillung, María J Olmo-Uceda, Juan C Muñoz-Sánchez, Santiago F Elena
Accumulation Dynamics of Defective Genomes during Experimental Evolution of Two Betacoronaviruses. Viruses 16 (4) (2024)
José L Carrasco, Silvia Ambrós, Pablo A Gutiérrez, Santiago F Elena
Adaptation of turnip mosaic virus to Arabidopsis thaliana involves rewiring of VPg-host proteome interactions. Virus evolution 10 (1) (2024)
Pau Alfonso, Anamarija Butković, Rosa Fernández, Ana Riesgo, Santiago F Elena
Unveiling the hidden viromes across the animal tree of life: insights from a taxonomic classification pipeline applied to invertebrates of 31 metazoan phyla. mSystems 9 (5) (2024)
José L Carrasco, Silvia Ambrós, Pablo A Gutiérrez, Santiago F Elena
Adaptation of turnip mosaic virus to Arabidopsis thaliana involves rewiring of VPg-host proteome interactions. Virus evolution 10 (1) (2024)
Julia Hillung, María J Olmo-Uceda, Juan C Muñoz-Sánchez, Santiago F Elena
Accumulation Dynamics of Defective Genomes during Experimental Evolution of Two Betacoronaviruses. Viruses 16 (4) (2024)
Pau Alfonso, Anamarija Butković, Rosa Fernández, Ana Riesgo, Santiago F Elena
Unveiling the hidden viromes across the animal tree of life: insights from a taxonomic classification pipeline applied to invertebrates of 31 metazoan phyla. mSystems (2024)
Victoria G Castiglioni, Santiago F Elena
Orsay virus infection increases Caenorhabditis elegans resistance to heat-shock. Biology letters 20 (8) (2024)
Julia Hillung, María J Olmo-Uceda, Juan C Muñoz-Sánchez, Santiago F Elena
Accumulation Dynamics of Defective Genomes during Experimental Evolution of Two Betacoronaviruses. Viruses 16 (4) (2024)
Anamarija Butkovic, Thomas James Ellis, Ruben Gonzalez, Benjamin Jaegle, Magnus Nordborg, Santiago F Elena
Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus. eLife 12 (2024)
Anamarija Butkovic, Thomas James Ellis, Ruben Gonzalez, Benjamin Jaegle, Magnus Nordborg, Santiago F Elena
Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus. eLife 12 (2024)
Fernando Martínez, José L Carrasco, Christina Toft, Julia Hillung, Silvia Giménez-Santamarina, Lynne Yenush, Guillermo Rodrigo, Santiago F Elena
A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes. Communications biology 6 (1) (2023)
Izan Melero, Rubén González, Santiago F Elena
Host developmental stages shape the evolution of a plant RNA virus. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378 (1873) (2023)
Izan Melero, Rubén González, Santiago F Elena
Host developmental stages shape the evolution of a plant RNA virus. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378 (1873) (2023)
Santiago F Elena
The role of indels in evolution and pathogenicity of RNA viruses. Proceedings of the National Academy of Sciences of the United States of America 120 (33) (2023)
Izan Melero, Rubén González, Santiago F Elena
Host developmental stages shape the evolution of a plant RNA virus. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378 (1873) (2023)
Izan Melero, Rubén González, Santiago F Elena
Host developmental stages shape the evolution of a plant RNA virus. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378 (1873) (2023)
Fernando Martínez, José L Carrasco, Christina Toft, Julia Hillung, Silvia Giménez-Santamarina, Lynne Yenush, Guillermo Rodrigo, Santiago F Elena
A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes. Communications biology 6 (1) (2023)
Silvia Ambrós, María J Olmo-Uceda, Régis L Corrêa, Santiago F Elena
Phenotypic and genomic changes during Turnip mosaic virus adaptation to Arabidopsis thaliana mutants lacking epigenetic regulatory factors. Evolution; international journal of organic evolution (2023)
Izan Melero, Rubén González, Santiago F Elena
Host developmental stages shape the evolution of a plant RNA virus. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378 (1873) (2023)
Franziska Hufsky, Ana Barroso Abecasis, Artem Babaian, Sebastian Beck, Liam Brierley, Simon Dellicour, Christian Eggeling, Santiago F Elena, Udo Gieraths, Anh D Ha, William T Harvey, Terry C Jones, Kevin Lamkiewicz, Gabriel Lencioni Lovate, Dominik Lücking, Martin Machyna, Luca Nishimura, Maximilian K Nocke, Bernard Y Renard, Shoichi Sakaguchi, Lygeri Sakellaridi, Jannes Spangenberg, Maria Tarradas-Alemany, Sandra Triebel, Yulia A Vakulenko, Rajitha Yasas Wijesekara, Fernando Gonzáles-Candelas, Sarah Krautwurst, Alba Pérez-Cataluña, Walter Randazzo, Gloria Sánchez, Manja Marz
The International Virus Bioinformatics Meeting 2023. Viruses 15 (10) (2023)
Fernando Martínez, José L Carrasco, Christina Toft, Julia Hillung, Silvia Giménez-Santamarina, Lynne Yenush, Guillermo Rodrigo, Santiago F Elena
A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes. Communications biology 6 (1) (2023)
Fernando Martínez, José L Carrasco, Christina Toft, Julia Hillung, Silvia Giménez-Santamarina, Lynne Yenush, Guillermo Rodrigo, Santiago F Elena
A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes. Communications biology 6 (1) (2023)
Fernando Martínez, José L Carrasco, Christina Toft, Julia Hillung, Silvia Giménez-Santamarina, Lynne Yenush, Guillermo Rodrigo, Santiago F Elena
A binary interaction map between turnip mosaic virus and Arabidopsis thaliana proteomes. Communications biology 6 (1) (2023)
Santiago F Elena
Bridging quasispecies theory and social evolution models for sociovirology insights: a commentary on Leeks et al. 2023. Journal of evolutionary biology 36 (11) (2023)
Pablo A Gutiérrez, Santiago F Elena
Single-cell RNA-sequencing data analysis reveals a highly correlated triphasic transcriptional response to SARS-CoV-2 infection. Communications biology 5 (1) (2022)
María J Olmo-Uceda, Juan C Muñoz-Sánchez, Wilberth Lasso-Giraldo, Vicente Arnau, Wladimiro Díaz-Villanueva, Santiago F Elena
DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data. Viruses 14 (5) (2022)
Julia Minicka, Agnieszka Taberska, Aleksandra Zarzyńska-Nowak, Katarzyna Kubska, Daria Budzyńska, Santiago F Elena, Beata Hasiów-Jaroszewska
Genetic Diversity of Tomato Black Ring Virus Satellite RNAs and Their Impact on Virus Replication. International journal of molecular sciences 23 (16) (2022)
Vanesa Mongelli, Sébastian Lequime, Athanasios Kousathanas, Valérie Gausson, Hervé Blanc, Jared Nigg, Lluis Quintana-Murci, Santiago F Elena, María-Carla Saleh
Innate immune pathways act synergistically to constrain RNA virus evolution in Drosophila melanogaster. Nature ecology & evolution 6 (5) (2022)
Rebeca Navarro, Silvia Ambrós, Anamarija Butković, José L Carrasco, Rubén González, Fernando Martínez, Beilei Wu, Santiago F Elena
Defects in plant immunity modulate the rates and patterns of RNA virus evolution. Virus evolution 8 (2) (2022)
Igor Koloňuk, Alena Matyášová, Sára Brázdová, Jana Veselá, Jaroslava Přibylová, Jana Fránová, Santiago F Elena
Transmission of Diverse Variants of Strawberry Viruses Is Governed by a Vector Species. Viruses 14 (7) (2022)
Anamarija Butković, Rubén González, Santiago F Elena
Revisiting Orthotospovirus phylogeny using full-genome data and testing the contribution of selection, recombination and segment reassortment in the origin of members of new species. Archives of virology 166 (2) (2021)
Cristina Alcaide, Josep Sardanyés, Santiago F Elena, Pedro Gómez
Increasing temperature alters the within-host competition of viral strains and influences virus genetic variability. Virus evolution 7 (1) (2021)
Rubén González, Santiago F Elena
The Interplay between the Host Microbiome and Pathogenic Viral Infections. mBio (2021)
João Marcos Fagundes Silva, Tatsuya Nagata, Fernando Lucas de Melo, Santiago F Elena
Heterogeneity in the Response of Different Subtypes of Drosophila melanogaster Midgut Cells to Viral Infections. Viruses 13 (11) (2021)
Rubén González, Anamarija Butković, Francisco J Escaray, Javier Martínez-Latorre, Ízan Melero, Enric Pérez-Parets, Aurelio Gomez-Cadenas, Pedro Carrasco, Santiago F Elena
Plant virus evolution under strong drought conditions results in a transition from parasitism to mutualism. Proceedings of the National Academy of Sciences of the United States of America 118 (6) (2021)
Ricard V Solé, Josep Sardanyés, Santiago F Elena
Phase transitions in virology. Reports on progress in physics. Physical Society (Great Britain) 84 (11) (2021)
Nono S C Merleau, Sophie Pénisson, Philip J Gerrish, Santiago F Elena, Matteo Smerlak
Why are viral genomes so fragile? The bottleneck hypothesis. PLoS computational biology 17 (7) (2021)
Anel Nurtay, Matthew G Hennessy, Lluís Alsedà, Santiago F Elena, Josep Sardanyés
Host-virus evolutionary dynamics with specialist and generalist infection strategies: Bifurcations, bistability, and chaos. Chaos (Woodbury, N.Y.) 30 (5) (2021)
Mark P Zwart, Santiago F Elena
Modeling multipartite virus evolution: the genome formula facilitates rapid adaptation to heterogeneous environments†. Virus evolution 6 (1) (2020)
Washington Luís da Silva, Kutnjak Denis, Yi Xu, Yimin Xu, James Giovannoni, Santiago F Elena, Stewart M Gray
Transmission modes affect the population structure of potato virus Y in potato. PLoS pathogens 16 (6) (2020)
Anamarija Butković, Rubén González, Inés Cobo, Santiago F Elena
Adaptation of turnip mosaic potyvirus to a specific niche reduces its genetic and environmental robustness. Virus evolution 6 (2) (2020)
Rubén González, Anamarija Butković, Santiago F Elena
Role of host genetic diversity for susceptibility-to-infection in the evolution of virulence of a plant virus. Virus evolution 5 (2) (2019)
Pablo Catalán, Santiago F Elena, Jose A Cuesta, Susanna Manrubia
Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo. Viruses 11 (5) (2019)
Anel Nurtay, Matthew G Hennessy, Josep Sardanyés, Lluís Alsedà, Santiago F Elena
Theoretical conditions for the coexistence of viral strains with differences in phenotypic traits: a bifurcation analysis. Royal Society open science 6 (1) (2019)
Anouk Willemsen, José L Carrasco, Santiago F Elena, Mark P Zwart
Going, going, gone: predicting the fate of genomic insertions in plant RNA viruses. Heredity 121 (5) (2018)
J Arjan G M de Visser, Santiago F Elena, Inês R Fragata, Sebastian Matuszewski
The utility of fitness landscapes and big data for predicting evolution. Heredity 121 (5) (2018)
Lin Chao, Santiago F Elena
Nonlinear trade-offs allow the cooperation game to evolve from Prisoner's Dilemma to Snowdrift. Proceedings. Biological sciences 284 (1854) (2018)
Beilei Wu, Mark P Zwart, Jesús A Sánchez-Navarro, Santiago F Elena
Within-host Evolution of Segments Ratio for the Tripartite Genome of Alfalfa Mosaic Virus. Scientific reports 7 (1) (2017)
Susana Martín, José M Cuevas, Ana Grande-Pérez, Santiago F Elena
A putative antiviral role of plant cytidine deaminases. F1000Research (2017)
Héctor Cervera, Jasna Lalić, Santiago F Elena
Efficient escape from local optima in a highly rugged fitness landscape by evolving RNA virus populations. Proceedings. Biological sciences 283 (1836) (2017)
Denis Kutnjak, Santiago F Elena, Maja Ravnikar
Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y. Journal of virology 91 (16) (2017)
Susana Martín, José M Cuevas, Ana Grande-Pérez, Santiago F Elena
A putative antiviral role of plant cytidine deaminases. F1000Research 6 (2017)
Santiago F Elena
Evolutionary transitions during RNA virus experimental evolution. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 371 (1701) (2017)
Julia Hillung, José M Cuevas, Santiago F Elena
Evaluating the within-host fitness effects of mutations fixed during virus adaptation to different ecotypes of a new host. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 370 (1675) (2016)
Héctor Cervera, Jasna Lalić, Santiago F Elena
Effect of Host Species on Topography of the Fitness Landscape for a Plant RNA Virus. Journal of virology 90 (22) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Santiago F Elena