Kutnjak Denis (Denis Kutnjak)

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 17

Top Venues

Viruses

Plants (Basel, Switzerland)

Molecular ecology resources

Microbiome

National Institute of Biology

Jožef Stefan International Postgraduate School (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Institute of Biology

Slovenia

research asistant :: Department of Biotechnology and Systems Biology

National Institute of Biology

Slovenia

young researcher :: Department of Biotechnology and Systems Biology

Education History

Jožef Stefan International Postgraduate School

Slovenia

PHD :: Nanoscience and Nanotechnology

Publications

Annelies Haegeman, Yoika Foucart, Kris De Jonghe, Thomas Goedefroit, Maher Al Rwahnih, Neil Boonham, Thierry Candresse, Yahya Zakaria Abdou Gaafar, Oscar P Hurtado-Gonzales, Zala Kogej Zwitter, Kutnjak Denis, Janja Lamovšek, Marie Lefebvre, Martha Malapi, Irena Mavrič Pleško, Serkan Önder, Jean-Sebastien Reynard, Ferran Salavert Pamblanco, Olivier Schumpp, Kristian Stevens, Chandan Pal, Lucie Tamisier, Ç Ulubaş Serçe, Inge van Duivenbode, David W Waite, Xiaojun Hu, Heiko Ziebell, Sébastien Massart
Correction: Haegeman et al. Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests. Plants 2023, 12 , 2139. Plants (Basel, Switzerland) 13 (5) (2024)
Mojca Janc, Kaja Zevnik, Ana Dolinar, Tjaša Jakomin, Maja Štalekar, Katarina Bačnik, Kutnjak Denis, Magda Tušek Žnidarič, Lorena Zentilin, Dmitrii Fedorov, David Dobnik
In-Depth Comparison of Adeno-Associated Virus Containing Fractions after CsCl Ultracentrifugation Gradient Separation. Viruses 16 (8) (2024)
Annelies Haegeman, Yoika Foucart, Kris De Jonghe, Thomas Goedefroit, Maher Al Rwahnih, Neil Boonham, Thierry Candresse, Yahya Zakaria Abdou Gaafar, Oscar P Hurtado-Gonzales, Zala Kogej Zwitter, Kutnjak Denis, Janja Lamovšek, Marie Lefebvre, Martha Malapi, Irena Mavrič Pleško, Serkan Önder, Jean-Sebastien Reynard, Ferran Salavert Pamblanco, Olivier Schumpp, Kristian Stevens, Chandan Pal, Lucie Tamisier, Ç Ulubaş Serçe, Inge van Duivenbode, David W Waite, Xiaojun Hu, Heiko Ziebell, Sébastien Massart
Correction: Haegeman et al. Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests. Plants 2023, 12 , 2139. Plants (Basel, Switzerland) 13 (5) (2024)
Mojca Janc, Kaja Zevnik, Ana Dolinar, Tjaša Jakomin, Maja Štalekar, Katarina Bačnik, Kutnjak Denis, Magda Tušek Žnidarič, Lorena Zentilin, Dmitrii Fedorov, David Dobnik
In-Depth Comparison of Adeno-Associated Virus Containing Fractions after CsCl Ultracentrifugation Gradient Separation. Viruses 16 (8) (2024)
Šet Janko, Šturm Rok, Koderman Blaž, Danilo Bevk, Andrej Gogala, Kutnjak Denis, Klemen Čandek, Gregorič Matjaž
DNA barcoding insufficiently identifies European wild bees (Hymenoptera, Anthophila) due to undefined species diversity, genus-specific barcoding gaps and database errors. Molecular ecology resources 24 (5) (2024)
Šet Janko, Šturm Rok, Koderman Blaž, Danilo Bevk, Andrej Gogala, Kutnjak Denis, Klemen Čandek, Gregorič Matjaž
DNA barcoding insufficiently identifies European wild bees (Hymenoptera, Anthophila) due to undefined species diversity, genus-specific barcoding gaps and database errors. Molecular ecology resources (2024)
Annelies Haegeman, Yoika Foucart, Kris De Jonghe, Thomas Goedefroit, Maher Al Rwahnih, Neil Boonham, Thierry Candresse, Yahya Zakaria Abdou Gaafar, Oscar P Hurtado-Gonzales, Zala Kogej Zwitter, Kutnjak Denis, Janja Lamovšek, Marie Lefebvre, Martha Malapi, Irena Mavrič Pleško, Serkan Önder, Jean-Sebastien Reynard, Ferran Salavert Pamblanco, Olivier Schumpp, Kristian Stevens, Chandan Pal, Lucie Tamisier, Ç Ulubaş Serçe, Inge van Duivenbode, David W Waite, Xiaojun Hu, Heiko Ziebell, Sébastien Massart
Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests. Plants (Basel, Switzerland) 12 (11) (2023)
Mark Paul Selda Rivarez, Anja Pecman, Katarina Bačnik, Olivera Maksimović, Ana Vučurović, Gabrijel Seljak, Nataša Mehle, Ion Gutiérrez-Aguirre, Maja Ravnikar, Kutnjak Denis
In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem. Microbiome 11 (1) (2023)
Mark Paul Selda Rivarez, Anja Pecman, Katarina Bačnik, Olivera Maksimović, Ana Vučurović, Gabrijel Seljak, Nataša Mehle, Ion Gutiérrez-Aguirre, Maja Ravnikar, Kutnjak Denis
In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem. Microbiome 11 (1) (2023)
Gregorič Matjaž, Kutnjak Denis, Katarina Bačnik, Cene Gostinčar, Anja Pecman, Maja Ravnikar, Matjaž Kuntner
Spider webs as eDNA samplers: Biodiversity assessment across the tree of life. Molecular ecology resources 22 (7) (2022)
Coline Temple, Arnaud Gérard Blouin, Kris De Jonghe, Yoika Foucart, Marleen Botermans, Marcel Westenberg, Ruben Schoen, Pascal Gentit, Michèle Visage, Eric Verdin, Catherine Wipf-Scheibel, Heiko Ziebell, Yahya Zakaria Abdou Gaafar, Amjad Zia, Xiao-Hua Yan, Katja R Richert-Pöggeler, Roswitha Ulrich, Mark Paul Selda Rivarez, Kutnjak Denis, Ana Vučurović, Sébastien Massart
Biological and Genetic Characterization of Physostegia Chlorotic Mottle Virus in Europe Based on Host Range, Location, and Time. Plant disease 106 (11) (2022)
Olivera Maksimovic Carvalho Ferreira, Živa Lengar, Zala Kogej Zwitter, Katarina Bačnik, Irena Bajde, Mojca Milavec, Anze Zupanic, Nataša Mehle, Kutnjak Denis, Maja Ravnikar, Ion Gutiérrez-Aguirre
Evaluation of Methods and Processes for Robust Monitoring of SARS-CoV-2 in Wastewater. Food and environmental virology 14 (4) (2022)
Yahya Zakaria Abdou Gaafar, Marcel Westenberg, Marleen Botermans, Krizbai László, Kris De Jonghe, Yoika Foucart, Luca Ferretti, Kutnjak Denis, Anja Pecman, Nataša Mehle, Jan F Kreuze, Giovanna Muller, Nikolaos Vakirlis, Despoina Beris, Christina Varveri, Heiko Ziebell
Interlaboratory Comparison Study on Ribodepleted Total RNA High-Throughput Sequencing for Plant Virus Diagnostics and Bioinformatic Competence. Pathogens (Basel, Switzerland) 10 (9) (2021)
Katarina Bačnik, Kutnjak Denis, Silvija Černi, Ana Bielen, Sandra Hudina
Virome Analysis of Signal Crayfish (Pacifastacus leniusculus) along Its Invasion Range Reveals Diverse and Divergent RNA Viruses. Viruses 13 (11) (2021)
Kutnjak Denis, Lucie Tamisier, Ian Adams, Neil Boonham, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Jan F Kreuze, Marie Lefebvre, Gonçalo Silva, Martha Malapi-Wight, Paolo Margaria, Irena Mavrič Pleško, Sam McGreig, Laura Miozzi, Benoit Remenant, Jean-Sebastien Reynard, Johan Rollin, Mike Rott, Olivier Schumpp, Sébastien Massart, Annelies Haegeman
A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses. Microorganisms 9 (4) (2021)
Washington Luís da Silva, Kutnjak Denis, Yi Xu, Yimin Xu, James Giovannoni, Santiago F Elena, Stewart M Gray
Transmission modes affect the population structure of potato virus Y in potato. PLoS pathogens 16 (6) (2020)
Tomaž Mark Zorec, Kutnjak Denis, Lea Hošnjak, Blanka Kušar, Katarina Trčko, Boštjan J Kocjan, Yu Li, Miljenko Križmarić, Jovan Miljković, Maja Ravnikar, Mario Poljak
New Insights into the Evolutionary and Genomic Landscape of Molluscum Contagiosum Virus (MCV) based on Nine MCV1 and Six MCV2 Complete Genome Sequences. Viruses 10 (11) (2018)

Kutnjak Denis.css-eqlu8i{font-size:small;padding-left:4px;} (Denis Kutnjak)

Publication Activity (10 Years)

Top Topics

Top Venues

Kutnjak Denis (Denis Kutnjak)