Sara Mostafavi

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 19

Top Venues

University of British Columbia

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of British Columbia Jan 05 2015

Canada

Assistant Professor :: Medical Genetics

University of British Columbia Jan 05 2015

Canada

Assistant Professor :: Statistics

Publications

Masashi Fujita, Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C White, Bernard Ng, Gilad Sahar Green, Orit Rozenblatt-Rosen, Devan Phillips, Liat Amir-Zilberstein, Hyo Lee, Richard V Pearse, Atlas Khan, Badri N Vardarajan, Krzysztof Kiryluk, Chun Jimmie Ye, Hans-Ulrich Klein, Gao Wang, Aviv Regev, Naomi Habib, Julie A Schneider, Yangling Wang, Tracy L Young-Pearse, Sara Mostafavi, David A Bennett, Vilas Menon, Philip Lawrence De Jager
Cell subtype-specific effects of genetic variation in the Alzheimer's disease brain. Nature genetics 56 (4) (2024)
Alexander Sasse, Maria Chikina, Sara Mostafavi
Unlocking gene regulation with sequence-to-function models. Nature methods 21 (8) (2024)
Masashi Fujita, Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C White, Bernard Ng, Gilad Sahar Green, Orit Rozenblatt-Rosen, Devan Phillips, Liat Amir-Zilberstein, Hyo Lee, Richard V Pearse, Atlas Khan, Badri N Vardarajan, Krzysztof Kiryluk, Chun Jimmie Ye, Hans-Ulrich Klein, Gao Wang, Aviv Regev, Naomi Habib, Julie A Schneider, Yangling Wang, Tracy L Young-Pearse, Sara Mostafavi, David A Bennett, Vilas Menon, Philip Lawrence De Jager
Cell subtype-specific effects of genetic variation in the Alzheimer's disease brain. Nature genetics (2024)
Masashi Fujita, Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C White, Bernard Ng, Gilad Sahar Green, Orit Rozenblatt-Rosen, Devan Phillips, Liat Amir-Zilberstein, Hyo Lee, Richard V Pearse, Atlas Khan, Badri N Vardarajan, Krzysztof Kiryluk, Chun Jimmie Ye, Hans-Ulrich Klein, Gao Wang, Aviv Regev, Naomi Habib, Julie A Schneider, Yangling Wang, Tracy L Young-Pearse, Sara Mostafavi, David A Bennett, Vilas Menon, Philip Lawrence De Jager
Cell subtype-specific effects of genetic variation in the Alzheimer's disease brain. Nature genetics 56 (4) (2024)
Masashi Fujita, Zongmei Gao, Lu Zeng, Cristin McCabe, Charles C White, Bernard Ng, Gilad Sahar Green, Orit Rozenblatt-Rosen, Devan Phillips, Liat Amir-Zilberstein, Hyo Lee, Richard V Pearse, Atlas Khan, Badri N Vardarajan, Krzysztof Kiryluk, Chun Jimmie Ye, Hans-Ulrich Klein, Gao Wang, Aviv Regev, Naomi Habib, Julie A Schneider, Yangling Wang, Tracy L Young-Pearse, Sara Mostafavi, David A Bennett, Vilas Menon, Philip Lawrence De Jager
Cell subtype-specific effects of genetic variation in the Alzheimer's disease brain. Nature genetics 56 (4) (2024)
Alexander Sasse, Maria Chikina, Sara Mostafavi
Unlocking gene regulation with sequence-to-function models. Nature methods 21 (8) (2024)
Gherman E Novakovsky, Oriol Fornes, Manu Saraswat, Sara Mostafavi, Wyeth W Wasserman
ExplaiNN: interpretable and transparent neural networks for genomics. Genome biology 24 (1) (2023)
Gherman E Novakovsky, Oriol Fornes, Manu Saraswat, Sara Mostafavi, Wyeth W Wasserman
ExplaiNN: interpretable and transparent neural networks for genomics. Genome biology 24 (1) (2023)
Molly Perchlik, Alexander Sasse, Sara Mostafavi, Stanley Fields, Josh T Cuperus
Impact on splicing in Saccharomyces cerevisiae of random 50-base sequences inserted into an intron. RNA (New York, N.Y.) (2023)
Alexander Sasse, Bernard Ng, Anna E Spiro, Shinya Tasaki, David A Bennett, Christopher Gaiteri, Philip Lawrence De Jager, Maria Chikina, Sara Mostafavi
Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings. Nature genetics (2023)
Gherman E Novakovsky, Oriol Fornes, Manu Saraswat, Sara Mostafavi, Wyeth W Wasserman
ExplaiNN: interpretable and transparent neural networks for genomics. Genome biology 24 (1) (2023)
Gherman E Novakovsky, Oriol Fornes, Manu Saraswat, Sara Mostafavi, Wyeth W Wasserman
ExplaiNN: interpretable and transparent neural networks for genomics. Genome biology 24 (1) (2023)
Gherman E Novakovsky, Nick Dexter, Maxwell W Libbrecht, Wyeth W Wasserman, Sara Mostafavi
Obtaining genetics insights from deep learning via explainable artificial intelligence. Nature reviews. Genetics (2022)
Michael C Vermeulen, Richard Pearse, Tracy Young-Pearse, Sara Mostafavi
Mosaic loss of Chromosome Y in aged human microglia. Genome research 32 (10) (2022)
Gherman E Novakovsky, Manu Saraswat, Oriol Fornes, Sara Mostafavi, Wyeth W Wasserman
Biologically relevant transfer learning improves transcription factor binding prediction. Genome biology 22 (1) (2021)
Andrea A Jones, Kristina M Gicas, Sara Mostafavi, Melissa L Woodward, Olga Leonova, Fidel Vila Rodriguez, Ric M Procyshyn, Alex Cheng, Tari Buchanan, Donna J Lang, G William MacEwan, Alasdair M Barr, Alasdair M Barr, Allen E Thornton, William G Honer
Dynamic networks of psychotic symptoms in adults living in precarious housing or homelessness. Psychological medicine (2021)
Bernard Ng, William Casazza, Nam Hee Kim, Chendi Wang, Farnush Farhadi, Shinya Tasaki, David A Bennett, Philip Lawrence De Jager, Christopher Gaiteri, Sara Mostafavi
Cascading epigenomic analysis for identifying disease genes from the regulatory landscape of GWAS variants. PLoS genetics 17 (11) (2021)
Ellis Patrick, Mariko Taga, Ayla Ergun, Bernard Ng, William Casazza, Maria Cimpean, Christina Yung, Julie A Schneider, David A Bennett, Chris Gaiteri, Philip Lawrence De Jager, Elizabeth M Bradshaw, Sara Mostafavi
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression. PLoS computational biology 16 (8) (2020)
Emma J Graham Linck, Phillip A Richmond, Maja Tarailo-Graovac, Udo Engelke, Leo A J Kluijtmans, Karlien L M Coene, Ron A Wevers, Wyeth W Wasserman, Clara D M van Karnebeek, Sara Mostafavi
metPropagate: network-guided propagation of metabolomic information for prioritization of metabolic disease genes. NPJ genomic medicine 5 (2020)

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Publication Activity (10 Years)

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Sara Mostafavi