Tinghu Zhang (Shihua Zhang)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 25

Top Topics

Top Venues

Nature communications

Nucleic acids research

bioRxiv : the preprint server for biology

Nature computational science

This page only lists publications with an associated author ORCID identifier.

Publications

Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Biao Zhang, Shuqin Zhang, Tinghu Zhang
Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign. Nature communications 15 (1) (2024)
Shang Li, Kuo Gai, Kangning Dong, Yiyang Zhang, Tinghu Zhang
High-density generation of spatial transcriptomics with STAGE. Nucleic acids research 52 (9) (2024)
Biao Zhang, Shuqin Zhang, Tinghu Zhang
Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign. Nature communications 15 (1) (2024)
Shang Li, Kuo Gai, Kangning Dong, Yiyang Zhang, Tinghu Zhang
High-density generation of spatial transcriptomics with STAGE. Nucleic acids research 52 (9) (2024)
Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Shang Li, Kuo Gai, Kangning Dong, Yiyang Zhang, Tinghu Zhang
High-density generation of spatial transcriptomics with STAGE. Nucleic acids research 52 (9) (2024)
Biao Zhang, Shuqin Zhang, Tinghu Zhang
Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign. Nature communications 15 (1) (2024)
Shang Li, Kuo Gai, Kangning Dong, Yiyang Zhang, Tinghu Zhang
High-density generation of spatial transcriptomics with STAGE. Nucleic acids research (2024)
Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Shang Li, Kuo Gai, Kangning Dong, Yiyang Zhang, Tinghu Zhang
High-density generation of spatial transcriptomics with STAGE. Nucleic acids research 52 (9) (2024)
Guan-Shen Cui, Kangning Dong, Jia-Yi Zhou, Shang Li, Ying Wu, Qinghua Han, Bofei Yao, Qunlun Shen, Yong-Liang Zhao, Ying Yang, Jun Cai, Tinghu Zhang, Yun-Gui Yang
Spatiotemporal transcriptomic atlas reveals the dynamic characteristics and key regulators of planarian regeneration. Nature communications 14 (1) (2023)
Chihao Zhang, Tinghu Zhang, Jingyi Jessica Li
A Python Package itca for Information-Theoretic Classification Accuracy: A Criterion That Guides Data-Driven Combination of Ambiguous Outcome Labels in Multiclass Classification. Journal of computational biology : a journal of computational molecular cell biology (2023)
Xiang Zhou, Kangning Dong, Tinghu Zhang
Integrating spatial transcriptomics data across different conditions, technologies and developmental stages. Nature computational science 3 (10) (2023)
Chihao Zhang, Kangning Dong, Kazuyuki Aihara, Luo-Nan Chen, Tinghu Zhang
STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning. Nucleic acids research (2023)
Xiang Zhou, Kangning Dong, Tinghu Zhang
Integrating spatial transcriptomics data across different conditions, technologies and developmental stages. Nature computational science 3 (10) (2023)
Xiang Zhou, Kangning Dong, Tinghu Zhang
Integrating spatial transcriptomics data across different conditions, technologies and developmental stages. Nature computational science 3 (10) (2023)
Xu Shan, Jinyu Chen, Kangning Dong, Wei Zhou, Tinghu Zhang
Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data. Journal of computational biology : a journal of computational molecular cell biology 29 (7) (2022)
Kangning Dong, Tinghu Zhang
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder. Nature communications 13 (1) (2022)
Wenwen Min, Tsung-Hui Chang, Tinghu Zhang, Xiang Wan
TSCCA: A tensor sparse CCA method for detecting microRNA-gene patterns from multiple cancers. PLoS computational biology 17 (6) (2021)
Qunlun Shen, Tinghu Zhang
Approximate distance correlation for selecting highly interrelated genes across datasets. PLoS computational biology 17 (11) (2021)
Zhen Cao, Yanting Huang, Ran Duan, Peng Jin, Zhaohui S Qin, Tinghu Zhang
Disease category-specific annotation of variants using an ensemble learning framework. Briefings in bioinformatics (2021)
Bin Duan, Chi Zhou, Chengyu Zhu, Yifei Yu, Gaoyang Li, Tinghu Zhang, Chao Zhang, Xiangyun Ye, Hanhui Ma, Shen Qu, Zhiyuan Zhang, Ping Wang, Shuyang Sun, Qi Liu
Model-based understanding of single-cell CRISPR screening. Nature communications 10 (1) (2019)
Yusen Ye, Lin Gao, Tinghu Zhang
Circular Trajectory Reconstruction Uncovers Cell-Cycle Progression and Regulatory Dynamics from Single-Cell Hi-C Maps. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 6 (23) (2019)