Nature computational science

Keyphrases

Publications

volume 3, number 2, 2023

Yuchi Qiu, Guo-Wei Wei
Persistent spectral theory-guided protein engineering. Nature computational science 3 (2) (2023)

volume 3, number 3, 2023

Erica L Busch, Jessie Huang, Andrew Benz, Tom Wallenstein, Guillaume Lajoie, Guy Wolf, Smita Krishnaswamy, Nicholas B Turk-Browne
Multi-view manifold learning of human brain-state trajectories. Nature computational science 3 (3) (2023)

volume 3, number 4, 2023

Sharon Hammes-Schiffer
Exploring Proton-Coupled Electron Transfer at Multiple Scales. Nature computational science 3 (4) (2023)

volume 3, number 7, 2023

Albert Dominguez Mantes, Daniel Mas Montserrat, Carlos D Bustamante, Xavier Giró-I-Nieto, Alexander G Ioannidis
Neural ADMIXTURE for rapid genomic clustering. Nature computational science 3 (7) (2023)
Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D Nair, Clare M Miller, Aliza B Rubenstein, German Nudelman, Alicja Tadych, Chandra L Theesfeld, Alexandria Vornholt, Mary-Catherine George, Felicia Ruffin, Michael Dagher, Daniel G Chawla, Alessandra Soares-Schanoski, Rachel R Spurbeck, Lishomwa C Ndhlovu, Robert Sebra, Steven H Kleinstein, Andrew G Letizia, Irene Ramos, Vance G Fowler, Christopher W Woods, Elena Zaslavsky, Olga G Troyanskaya, Stuart C Sealfon
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nature computational science 3 (7) (2023)

volume 3, number 9, 2023

Bassel Ghaddar, Martin J Blaser, Subhajyoti De
Denoising sparse microbial signals from single-cell sequencing of mammalian host tissues. Nature computational science 3 (9) (2023)

volume 3, number 1, 2022

Tze Hui Koh, William E Bishop, Takashi Kawashima, Brian B Jeon, Ranjani Srinivasan, Yu Mu, Ziqiang Wei, Sandra J Kuhlman, Misha B Ahrens, Steven M Chase, Byron M Yu
Dimensionality reduction of calcium-imaged neuronal population activity. Nature computational science 3 (1) (2022)

volume 2, number 1, 2022

Ananya Rastogi
Effect of spatial sampling on phylogeography. Nature computational science 2 (1) (2022)
Nam D Nguyen, Jiawei Huang, Daifeng Wang
A deep manifold-regularized learning model for improving phenotype prediction from multi-modal data. Nature computational science 2 (1) (2022)

volume 2, number 11, 2022

Mariya Toneva, Tom M Mitchell, Leila Wehbe
Combining computational controls with natural text reveals aspects of meaning composition. Nature computational science 2 (11) (2022)
Mariya Toneva, Tom M Mitchell, Leila Wehbe
Combining computational controls with natural text reveals aspects of meaning composition. Nature computational science 2 (11) (2022)

volume 2, number 2, 2022

J Shepard Bryan, Ioannis Sgouralis, Steve Pressé
Diffraction-Limited Molecular Cluster Quantification with Bayesian Nonparametrics. Nature computational science 2 (2) (2022)
Madhur Srivastava
Revisiting signal analysis in the big data era. Nature computational science 2 (2) (2022)
Andrea Scharf, Josh Mitteldorf, Brinda Armstead, Daniel Schneider, He Jin, Zuzana Kocsisova, Chieh-Hsiang Tan, Francesca Sanchez, Brian Brady, Natasha Ram, Gabriel B DiAntonio, Andrea M Wilson, Kerry Kornfeld
A laboratory and simulation platform to integrate individual life history traits and population dynamics. Nature computational science 2 (2) (2022)

volume 2, number 3, 2022

Roxana Zeraati, Tatiana A Engel, Anna Levina
A flexible Bayesian framework for unbiased estimation of timescales. Nature computational science 2 (3) (2022)
Roxana Zeraati, Tatiana A Engel, Anna Levina
A flexible Bayesian framework for unbiased estimation of timescales. Nature computational science 2 (3) (2022)
Roxana Zeraati, Tatiana A Engel, Anna Levina
A flexible Bayesian framework for unbiased estimation of timescales. Nature computational science 2 (3) (2022)
Qimin Zhang, Qian Shi, Mingfu Shao
Accurate assembly of multi-end RNA-seq data with Scallop2. Nature computational science 2 (3) (2022)
Qimin Zhang, Qian Shi, Mingfu Shao
Accurate assembly of multi-end RNA-seq data with Scallop2. Nature computational science 2 (3) (2022)
Qimin Zhang, Qian Shi, Mingfu Shao
Accurate assembly of multi-end RNA-seq data with Scallop2. Nature computational science 2 (3) (2022)

volume 2, number 4, 2022

Xiao-Gen Zhou, Yang Li, Chengxin Zhang, Wei Zheng, Guijun Zhang, Yang Zhang
Progressive assembly of multi-domain protein structures from cryo-EM density maps. Nature computational science 2 (4) (2022)

volume 2, number 7, 2022

Ananya Rastogi
Modeling and combating misinformation spread. Nature computational science 2 (7) (2022)
Fernando Chirigati
Effects of mutations on SARS-CoV-2 fitness. Nature computational science 2 (7) (2022)

volume 2, number 8, 2022

Pearson W Miller, Daniel Fortunato, Cyrill B Muratov, Leslie Greengard, Stanislav Y Shvartsman
Forced and spontaneous symmetry breaking in cell polarization. Nature computational science 2 (8) (2022)

volume 2, 2022

Ian T Hoffecker, Alan Shaw, Viktoria Sorokina, Ioanna Smyrlaki, Björn Högberg
Stochastic modeling of antibody binding predicts programmable migration on antigen patterns. Nature computational science 2 (2022)

2021

Fernando Chirigati
Eva to the rescue. Nature computational science (2021)

volume 1, number 1, 2021

Tony Liu, Lyle Ungar, Konrad Paul Kording
Quantifying causality in data science with quasi-experiments. Nature computational science 1 (1) (2021)
Le Yang, Runpu Chen, Steve Goodison, Yijun Sun
An efficient and effective method to identify significantly perturbed subnetworks in cancer. Nature computational science 1 (1) (2021)

volume 1, number 10, 2021

Gordon Lemmon, Sergiusz Wesolowski, Alex Henrie, Martin Tristani-Firouzi, Mark Yandell
A Poisson binomial-based statistical testing framework for comorbidity discovery across electronic health record datasets. Nature computational science 1 (10) (2021)

volume 1, number 11, 2021

Jerelle A Joseph, Aleks Reinhardt, Anne Aguirre, Pin Yu Chew, Kieran O Russell, Jorge R Espinosa, Adiran Garaizar, Rosana Collepardo-Guevara
Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy. Nature computational science 1 (11) (2021)

volume 1, number 12, 2021

Yuchi Qiu, Jian Hu, Guo-Wei Wei
Cluster learning-assisted directed evolution. Nature computational science 1 (12) (2021)

volume 1, number 2, 2021

Brian B Avants, Nicholas J Tustison, James R Stone
Similarity-driven multi-view embeddings from high-dimensional biomedical data. Nature computational science 1 (2) (2021)
Rohan Gala, Agata Budzillo, Fahimeh Baftizadeh, Jeremy A Miller, Nathan W Gouwens, Anton Arkhipov, Gabe Murphy, Bosiljka Tasic, Hongkui Zeng, Michael Hawrylycz, Uygar Sümbül
Consistent cross-modal identification of cortical neurons with coupled autoencoders. Nature computational science 1 (2) (2021)

volume 1, number 4, 2021

Chong Jin, Mengjie Chen, Danyu Lin, Wei Sun
Cell type-aware analysis of RNA-seq data. Nature computational science 1 (4) (2021)
Diego A Espinoza, Ryland D Mortlock, Samson J Koelle, Chuanfeng Wu, Cynthia E Dunbar
Interrogation of clonal tracking data using barcodetrackR . Nature computational science 1 (4) (2021)

volume 1, number 5, 2021

Tamar Schlick, Stephanie Portillo-Ledesma
Biomolecular modeling thrives in the age of technology. Nature computational science 1 (5) (2021)
Xingcheng Lin, Jason T George, Nicholas P Schafer, Kevin Ng Chau, Michael E Birnbaum, Cecilia Clementi, José N Onuchic, Herbert Levine
Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire. Nature computational science 1 (5) (2021)
Shaoheng Liang, Vakul Mohanty, Jinzhuang Dou, Qi Miao, Yuefan Huang, Muharrem Müftüoğlu, Li Ding, Weiyi Peng, Ken Chen
Single-cell manifold-preserving feature selection for detecting rare cell populations. Nature computational science 1 (5) (2021)
Shaoheng Liang, Vakul Mohanty, Jinzhuang Dou, Qi Miao, Yuefan Huang, Muharrem Müftüoğlu, Li Ding, Weiyi Peng, Ken Chen
Single-cell manifold-preserving feature selection for detecting rare cell populations. Nature computational science 1 (5) (2021)
Shaoheng Liang, Vakul Mohanty, Jinzhuang Dou, Qi Miao, Yuefan Huang, Muharrem Müftüoğlu, Li Ding, Weiyi Peng, Ken Chen
Single-cell manifold-preserving feature selection for detecting rare cell populations. Nature computational science 1 (5) (2021)

volume 1, number 6, 2021

Yuanfang Guan, Hongyang Li, Daiyao Yi, Dongdong Zhang, Changchang Yin, Keyu Li, Ping Zhang
A survival model generalized to regression learning algorithms. Nature computational science 1 (6) (2021)
Eric R Gamazon
Detecting context-dependent gene regulation. Nature computational science 1 (6) (2021)
Hao Hou, Brent Pedersen, Aaron R Quinlan
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nature computational science 1 (6) (2021)

volume 1, number 7, 2021

Xiaoyang Jing, Jinbo Xu
Fast and effective protein model refinement using deep graph neural networks. Nature computational science 1 (7) (2021)

volume 1, number 8, 2021

Muhammad Haseeb, Fahad Saeed
High Performance Computing Framework for Tera-Scale Database Search of Mass Spectrometry Data. Nature computational science 1 (8) (2021)

volume 1, number 9, 2021

Sudip Sharma, Sudhir Kumar
Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstraps. Nature computational science 1 (9) (2021)

volume 1, 2021

Elena Vigorito, Wei-Yu Lin, Colin Starr, Paul D W Kirk, Simon R White, Chris Wallace
Detection of quantitative trait loci from RNA-seq data with or without genotypes using BaseQTL. Nature computational science 1 (2021)
Maxime Chamberland, Sila Genc, Chantal M W Tax, Dmitri Shastin, Kristin Koller, Erika P Raven, Adam Cunningham, Joanne Doherty, Marianne B M van den Bree, Greg D Parker, Khalid Hamandi, William Peter Gray, Derek K Jones
Detecting microstructural deviations in individuals with deep diffusion MRI tractometry. Nature computational science 1 (2021)
Carla Tameling, Stefan Stoldt, Till Stephan, Julia Naas, Stefan Jakobs, Axel Munk
Colocalization for super-resolution microscopy via optimal transport. Nature computational science 1 (2021)