Jean Yee Hwa Yang (Jean Y H Yang, J Yang, Jean Yang, Jean Y Yang, Priscilla L Yang)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 54

Top Venues

Nature communications

Genome research

bioRxiv : the preprint server for biology

F1000Research

University of Sydney

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Sydney Jul 15 2005

Australia

Professor :: School of Mathematics and Statistics

Education History

University of California Berkeley

United States

PHD :: Statistics

Publications

Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Aleksandar Dakic, Jing Qin Wu, Tingting Wang, Kevin Huynh, Natalie Mellett, Thy Duong, Habtamu B Beyene, Dianna J Magliano, Jonathan Edward Shaw, Melinda J Carrington, Michael Inouye, Jean Yee Hwa Yang, Gemma A Figtree, Joanne E Curran, John E Blangero, John Simes, null null, Corey Giles, Peter J Meikle
Imputation of plasma lipid species to facilitate integration of lipidomic datasets. Nature communications 15 (1) (2024)
Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research 34 (1) (2024)
Harry Robertson, Hani Jieun Kim, Jennifer Li, Nicholas Robertson, Paul Robertson, Elvira Jimenez-Vera, Farhan Ameen, Andy Tran, Katie Trinh, Philip J O'Connell, Jean Yee Hwa Yang, Natasha M Rogers, Ellis Patrick
Decoding the hallmarks of allograft dysfunction with a comprehensive pan-organ transcriptomic atlas. Nature medicine (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research 34 (1) (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research 34 (1) (2024)
Aleksandar Dakic, Jing Qin Wu, Tingting Wang, Kevin Huynh, Natalie Mellett, Thy Duong, Habtamu B Beyene, Dianna J Magliano, Jonathan Edward Shaw, Melinda J Carrington, Michael Inouye, Jean Yee Hwa Yang, Gemma A Figtree, Joanne E Curran, John E Blangero, John Simes, null null, Corey Giles, Peter J Meikle
Imputation of plasma lipid species to facilitate integration of lipidomic datasets. Nature communications 15 (1) (2024)
Xiaohang Fu, Yingxin Lin, David M Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim, Jean Yee Hwa Yang
BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data. Nature communications 15 (1) (2024)
Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Xiaohang Fu, Yingxin Lin, David M Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim, Jean Yee Hwa Yang
BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data. Nature communications 15 (1) (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research 34 (1) (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research 34 (1) (2024)
Aleksandar Dakic, Jing Qin Wu, Tingting Wang, Kevin Huynh, Natalie Mellett, Thy Duong, Habtamu B Beyene, Dianna J Magliano, Jonathan Edward Shaw, Melinda J Carrington, Michael Inouye, Jean Yee Hwa Yang, Gemma A Figtree, Joanne E Curran, John E Blangero, John Simes, null null, Corey Giles, Peter J Meikle
Imputation of plasma lipid species to facilitate integration of lipidomic datasets. Nature communications 15 (1) (2024)
Zhengnian Li, Han-Yuan Liu, Zhixiang He, Antara Chakravarty, Ryan P Golden, Zixuan Jiang, Inchul You, Hong Yue, Katherine A Donovan, Guangyan Du, Jianwei Che, Jason Tse, Isaac Che, Wenchao Lu, Eric S Fischer, Tinghu Zhang, Nathanael S Gray, Jean Yee Hwa Yang
Discovery of Potent Degraders of the Dengue Virus Envelope Protein. bioRxiv : the preprint server for biology (2024)
Aleksandar Dakic, Jing Qin Wu, Tingting Wang, Kevin Huynh, Natalie Mellett, Thy Duong, Habtamu B Beyene, Dianna J Magliano, Jonathan Edward Shaw, Melinda J Carrington, Michael Inouye, Jean Yee Hwa Yang, Gemma A Figtree, Joanne E Curran, John E Blangero, John Simes, null null, Corey Giles, Peter J Meikle
Imputation of plasma lipid species to facilitate integration of lipidomic datasets. Nature communications 15 (1) (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research (2024)
Aleksandar Dakic, Jing Qin Wu, Tingting Wang, Kevin Huynh, Natalie Mellett, Thy Duong, Habtamu B Beyene, Dianna J Magliano, Jonathan Edward Shaw, Melinda J Carrington, Michael Inouye, Jean Yee Hwa Yang, Gemma A Figtree, Joanne E Curran, John E Blangero, John Simes, null null, Corey Giles, Peter J Meikle
Imputation of plasma lipid species to facilitate integration of lipidomic datasets. Nature communications 15 (1) (2024)
Xiaohang Fu, Yingxin Lin, David M Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim, Jean Yee Hwa Yang
BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data. Nature communications 15 (1) (2024)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research (2024)
Yue Cao, Andy Tran, Hani Kim, Nick Robertson, Yingxin Lin, Marni Torkel, Pengyi Yang, Ellis Patrick, Shila Ghazanfar, Jean Yee Hwa Yang
Thinking process templates for constructing data stories with SCDNEY. F1000Research 12 (2023)
Jie Hao, Jiawei Zou, Jiaqiang Zhang, Ke Chen, Duojiao Wu, Wei Cao, Guoguo Shang, Jean Yee Hwa Yang, KongFatt Wong-Lin, Hourong Sun, Zhen Zhang, Xiangdong Wang, Wantao Chen, Xin Zou
scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data. Briefings in bioinformatics (2023)
Daniel Kim, Andy Tran, Hani Jieun Kim, Yingxin Lin, Jean Yee Hwa Yang, Pengyi Yang
Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data. NPJ systems biology and applications 9 (1) (2023)
Jie Hao, Jiawei Zou, Jiaqiang Zhang, Ke Chen, Duojiao Wu, Wei Cao, Guoguo Shang, Jean Yee Hwa Yang, KongFatt Wong-Lin, Hourong Sun, Zhen Zhang, Xiangdong Wang, Wantao Chen, Xin Zou
scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data. Briefings in bioinformatics 24 (2) (2023)
Jie Hao, Jiawei Zou, Jiaqiang Zhang, Ke Chen, Duojiao Wu, Wei Cao, Guoguo Shang, Jean Yee Hwa Yang, KongFatt Wong-Lin, Hourong Sun, Zhen Zhang, Xiangdong Wang, Wantao Chen, Xin Zou
scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data. Briefings in bioinformatics 24 (2) (2023)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE. Genome research (2023)
Yue Cao, Andy Tran, Hani Kim, Nick Robertson, Yingxin Lin, Marni Torkel, Pengyi Yang, Ellis Patrick, Shila Ghazanfar, Jean Yee Hwa Yang
Thinking process templates for constructing data stories with SCDNEY. F1000Research 12 (2023)
Yue Cao, Andy Tran, Hani Kim, Nick Robertson, Yingxin Lin, Marni Torkel, Pengyi Yang, Ellis Patrick, Shila Ghazanfar, Jean Yee Hwa Yang
Thinking process templates for constructing data stories with SCDNEY. F1000Research 12 (2023)
Yue Cao, Andy Tran, Hani Kim, Nick Robertson, Yingxin Lin, Marni Torkel, Pengyi Yang, Ellis Patrick, Shila Ghazanfar, Jean Yee Hwa Yang
Thinking process templates for constructing data stories with SCDNEY. F1000Research 12 (2023)
Yingxin Lin, Yue Cao, Elijah Willie, Ellis Patrick, Jean Yee Hwa Yang
Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2. Nature communications 14 (1) (2023)
Yingxin Lin, Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin, Jean Yee Hwa Yang, Wing H Wong, Y X Rachel Wang
scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data. bioRxiv : the preprint server for biology (2023)
Genevieve Coorey, Gemma A Figtree, David F Fletcher, Victoria J Snelson, Stephen Thomas Vernon, David S Winlaw, Stuart M Grieve, Alistair McEwan, Jean Yee Hwa Yang, Pierre Qian, Kieran O'Brien, Jessica J Orchard, Jinman Kim, Sanjay Patel, Julie Redfern
The health digital twin to tackle cardiovascular disease-a review of an emerging interdisciplinary field. NPJ digital medicine 5 (1) (2022)
Essi Havula, S Ghazanfar, Nicole Lamichane, Deanne Francis, K Hasygar, Ying Liu, Lesley A Alton, Joshua N Johnstone, Elise J Needham, T Pulpitel, T Clark, H N Niranjan, V Shang, V Tong, N Jiwnani, G Audia, André N Alves, Lykke Sylow, Christen Kerry Mirth, G Gregory Neely, Jean Yee Hwa Yang, Ville Hietakangas, Stephen James Simpson, Alistair McNair Senior
Genetic variation of macronutrient tolerance in Drosophila melanogaster. Nature communications 13 (1) (2022)
Yingxin Lin, Tung-Yu Wu, Sheng Wan, Jean Yee Hwa Yang, Wing Hung Wong, Y X Rachel Wang
scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning. Nature biotechnology 40 (5) (2022)
Stephen T Vernon, Katharine A Kott, Thomas Hansen, Meghan Finemore, Karl W Baumgart, Ravinay Bhindi, Jean Yee Hwa Yang, Peter S Hansen, Stephen J Nicholls, David S Celermajer, Michael R Ward, Sheryl A van Nunen, Stuart M Grieve, Gemma A Figtree
Immunoglobulin E Sensitization to Mammalian Oligosaccharide Galactose-α-1,3 (α-Gal) Is Associated With Noncalcified Plaque, Obstructive Coronary Artery Disease, and ST-Segment-Elevated Myocardial Infarction. Arteriosclerosis, thrombosis, and vascular biology 42 (3) (2022)
Yingxin Lin, Lipin Loo, Andy Tran, David M Lin, Cesar L Moreno, Daniel Hesselson, G Gregory Neely, Jean Yee Hwa Yang
Scalable workflow for characterization of cell-cell communication in COVID-19 patients. PLoS computational biology 18 (10) (2022)
Yingxin Lin, Jean Yee Hwa Yang
3D reconstruction of spatial expression. Nature methods 19 (5) (2022)
Kevin Y X Wang, Gulietta M Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F Thompson, Richard A Scolyer, Samuel Muller, Garth Tarr, Graham J Mann, Jean Yee Hwa Yang
Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine. NPJ digital medicine 5 (1) (2022)
Yunwei Zhang, Germaine Wong, Graham J Mann, Samuel Muller, Jean Yee Hwa Yang
SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data. GigaScience 11 (2022)
Andy Tran, Pengyi Yang, Jean Yee Hwa Yang, John T Ormerod
scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model. NAR genomics and bioinformatics 4 (1) (2022)
Gregory P Way, Casey S Greene, Piero Carnici, Benilton S Carvalho, Michiel J L de Hoon, Stacey D Finley, Sara J C Gosline, Kim-Anh Lê Cao, Jerry S H Lee, Luigi Marchionni, Nicolas Robine, Suzanne S Sindi, Fabian Joachim Theis, Jean Yee Hwa Yang, Anne E Carpenter, Elana J Fertig
A field guide to cultivating computational biology. PLoS biology 19 (10) (2021)
Yue Cao, Pengyi Yang, Jean Yee Hwa Yang
A benchmark study of simulation methods for single-cell RNA sequencing data. Nature communications 12 (1) (2021)
Taiyun Kim, Owen Tang, Stephen T Vernon, Katharine A Kott, Yen Chin Koay, John Park, David E James, Stuart M Grieve, Terence P Speed, Pengyi Yang, Gemma A Figtree, John F O'Sullivan, Jean Yee Hwa Yang
A hierarchical approach to removal of unwanted variation for large-scale metabolomics data. Nature communications 12 (1) (2021)
Michal Lubomski, Xiangnan Xu, Andrew J Holmes, Jean Yee Hwa Yang, Carolyn M Sue, Ryan L Davis
The impact of device-assisted therapies on the gut microbiome in Parkinson's disease. Journal of neurology (2021)
Katharine A Kott, Marie-Christine Morel-Kopp, Stephen T Vernon, Yuki Takagi, Belinda A Di Bartolo, Karlheinz Peter, Jean Yee Hwa Yang, Stuart M Grieve, Christopher M Ward, Gemma A Figtree
Association of Global Coagulation Profiles With Cardiovascular Risk Factors and Atherosclerosis: A Sex Disaggregated Analysis From the BioHEART-CT Study. Journal of the American Heart Association 10 (20) (2021)
Hani Jieun Kim, Kevin Y X Wang, Carissa Chen, Yingxin Lin, Patrick P L Tam, David M Lin, Jean Yee Hwa Yang, Pengyi Yang
Uncovering cell identity through differential stability with Cepo. Nature computational science 1 (12) (2021)
Xiangnan Xu, Samantha M Solon-Biet, Alistair Senior, David Raubenheimer, Stephen J Simpson, Luigi Fontana, Samuel Mueller, Jean Yee Hwa Yang
LC-N2G: a local consistency approach for nutrigenomics data analysis. BMC bioinformatics 21 (1) (2020)
Shila Ghazanfar, Yingxin Lin, Xian-Bin Su, David Ming Lin, Ellis Patrick, Ze-Guang Han, John C Marioni, Jean Yee Hwa Yang
Investigating higher-order interactions in single-cell data with scHOT. Nature methods 17 (8) (2020)
Rebecca C Poulos, Peter G Hains, Rohan Shah, Natasha Lucas, Dylan Xavier, Srikanth S Manda, Asim Anees, Jennifer M S Koh, Sadia Mahboob, Max Wittman, Steven G Williams, Erin K Sykes, Michael Hecker, Michael Dausmann, Merridee A Wouters, Keith Ashman, Jean Yee Hwa Yang, Peter J Wild, Anna De Fazio, Rosemary L Balleine, Brett J Tully, Ruedi Aebersold, Terence P Speed, Yansheng Liu, Roger R Reddel, Phillip J Robinson, Qing Zhong
Strategies to enable large-scale proteomics for reproducible research. Nature communications 11 (1) (2020)
Jenny H Lee, Elena Shklovskaya, Su Yin Lim, Matteo S Carlino, Alexander M Menzies, Ashleigh Stewart, Bernadette Pedersen, Malama Irvine, Sara Alavi, Jean Yee Hwa Yang, Dario Strbenac, Robyn P M Saw, John F Thompson, James S Wilmott, Richard A Scolyer, Georgina V Long, Richard F Kefford, Helen Rizos
Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition. Nature communications 11 (1) (2020)
Mengbo Li, Benjamin L Parker, Evangeline Pearson, Benjamin Hunter, Jacob Cao, Yen Chin Koay, Oneka Guneratne, David E James, Jean Yee Hwa Yang, Sean Lal, John F O'Sullivan
Core functional nodes and sex-specific pathways in human ischaemic and dilated cardiomyopathy. Nature communications 11 (1) (2020)
Yingxin Lin, Shila Ghazanfar, Kevin Y X Wang, Johann A Gagnon-Bartsch, Kitty K Lo, Xianbin Su, Ze-Guang Han, John T Ormerod, Terence P Speed, Pengyi Yang, Jean Yee Hwa Yang
scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets. Proceedings of the National Academy of Sciences of the United States of America 116 (20) (2019)
Inês Pires da Silva, Kevin Y X Wang, James S Wilmott, Jeff Holst, Matteo S Carlino, John J Park, Camelia Quek, Matthew J Wongchenko, Yibing Yan, Graham J Mann, Douglas B Johnson, Jennifer Leigh McQuade, Rajat Rai, Richard F Kefford, Helen Rizos, Richard A Scolyer, Jean Yee Hwa Yang, Georgina V Long, Alexander M Menzies
Distinct Molecular Profiles and Immunotherapy Treatment Outcomes of V600E and V600K BRAF-Mutant Melanoma. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (4) (2019)
Su Y Lim, Jenny H J Lee, Tuba N Gide, Alexander M Menzies, Alexander Guminski, Matteo S Carlino, Edmond J Breen, Jean Yee Hwa Yang, Shila Ghazanfar, Richard A Scolyer, Richard A Scolyer, Georgina V Long, Helen Rizos
Circulating Cytokines Predict Immune-Related Toxicity in Melanoma Patients Receiving Anti-PD-1-Based Immunotherapy. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (5) (2018)

Jean Yee Hwa Yang.css-eqlu8i{font-size:small;padding-left:4px;} (Jean Y H Yang, J Yang, Jean Yang, Jean Y Yang, Priscilla L Yang)

Publication Activity (10 Years)

Top Topics

Top Venues

Jean Yee Hwa Yang (Jean Y H Yang, J Yang, Jean Yang, Jean Y Yang, Priscilla L Yang)