Shin-Han Shiu (Sahra Uygun)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 35

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Plant physiology

Nature communications

The Plant cell

Michigan State University

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Michigan State University Aug 01 2018

United States

Professor :: Computational Mathematics, Science, and Engineering

Michigan State University Aug 01 2017

United States

Professor :: Plant Biology

Michigan State University Jun 01 2011 - Jul 31 2017

United States

Associate Professor :: Plant Biology

Academia Sinica Jun 01 2012 - Dec 31 2012

Taiwan

Associate Research Fellow/Sabbatical :: Biodiversity Center

Michigan State University Jan 01 2006 - May 31 2011

United States

Assistant Professor :: Plant Biology

Education History

University of Wisconsin Madison

United States

PHD :: Botany

National Taiwan University Sep 01 1988 - Aug 31 1992

Taiwan

BSC :: Plant Pathology & Entomology

Publications

Shin-Han Shiu, Melissa D Lehti-Shiu
Assessing the evolution of research topics in a biological field using plant science as an example. PLoS biology 22 (5) (2024)
Peipei Wang, Melissa D Lehti-Shiu, Serena G Lotreck, Kenia Segura Abá, Patrick J Krysan, Shin-Han Shiu
Prediction of plant complex traits via integration of multi-omics data. Nature communications 15 (1) (2024)
Peipei Wang, Melissa D Lehti-Shiu, Serena G Lotreck, Kenia Segura Abá, Patrick J Krysan, Shin-Han Shiu
Prediction of plant complex traits via integration of multi-omics data. Nature communications 15 (1) (2024)
Peipei Wang, Melissa D Lehti-Shiu, Serena G Lotreck, Kenia Segura Abá, Patrick J Krysan, Shin-Han Shiu
Prediction of plant complex traits via integration of multi-omics data. Nature communications 15 (1) (2024)
Peipei Wang, Melissa D Lehti-Shiu, Serena G Lotreck, Kenia Segura Abá, Patrick J Krysan, Shin-Han Shiu
Prediction of plant complex traits via integration of multi-omics data. Nature communications 15 (1) (2024)
Shin-Han Shiu, Melissa D Lehti-Shiu
Assessing the evolution of research topics in a biological field using plant science as an example. PLoS biology 22 (5) (2024)
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold
Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold
Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold
Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold
Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold
Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Yun Sun Lee, Shin-Han Shiu, Erich Grotewold
Evolution and diversification of the ACT-like domain associated with plant basic helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America 120 (19) (2023)
Peipei Wang, Fanrui Meng, Paityn Donaldson, Sarah Horan, Nicholas L Panchy, Elyse Vischulis, Eamon Winship, Jeffrey K Conner, Patrick J Krysan, Shin-Han Shiu, Melissa D Lehti-Shiu
High-throughput measurement of plant fitness traits with an object detection method using Faster R-CNN. The New phytologist 234 (4) (2022)
Wen-Yu Liu, Chun-Ping Yu, Chao-Kang Chang, Hsiang-June Chen, Meng-Yun Li, Yi-Hua Chen, Shin-Han Shiu, Maurice S B Ku, Shih-Long Tu, Mei-Yeh Jade Lu, Wen-Hsiung Li
Regulators of early maize leaf development inferred from transcriptomes of laser capture microdissection (LCM)-isolated embryonic leaf cells. Proceedings of the National Academy of Sciences of the United States of America 119 (35) (2022)
Jennifer A Noble, Nicholas V Bielski, Ming-Che James Liu, Thomas A DeFalco, Martin Stegmann, Andrew D L Nelson, Kara M McNamara, Brooke Sullivan, Khanhlinh K Dinh, Nicholas Khuu, Sarah Hancock, Shin-Han Shiu, Cyril Zipfel, Alice Y Cheung, Mark A Beilstein, Ravishankar Palanivelu
Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization. Plant physiology 190 (4) (2022)
Siobhan A Cusack, Peipei Wang, Serena G Lotreck, Bethany M Moore, Fanrui Meng, Jeffrey K Conner, Patrick J Krysan, Melissa D Lehti-Shiu, Shin-Han Shiu
Predictive Models of Genetic Redundancy in Arabidopsis thaliana. Molecular biology and evolution 38 (8) (2021)
Peipei Wang, Fanrui Meng, Bethany M Moore, Shin-Han Shiu
Impact of short-read sequencing on the misassembly of a plant genome. BMC genomics 22 (1) (2021)
Peipei Wang, Bethany M Moore, Cheng Peng, Melissa D Lehti-Shiu, Cornelius S Barry, Shin-Han Shiu
Optimising the use of gene expression data to predict plant metabolic pathway memberships. The New phytologist 231 (1) (2021)
Nicholas L Panchy, John P Lloyd, Shin-Han Shiu
Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data. BMC genomics 21 (1) (2020)
Birte Schwarz, Christina B Azodi, Shin-Han Shiu, Petra Bauer
Putative cis-Regulatory Elements Predict Iron Deficiency Responses in Arabidopsis Roots. Plant physiology 182 (3) (2020)
Yan Bao, Wei-Meng Song, Peipei Wang, Xiang Yu, Bei Li, Chunmei Jiang, Shin-Han Shiu, Hongxia Zhang, Diane C Bassham
COST1 regulates autophagy to control plant drought tolerance. Proceedings of the National Academy of Sciences of the United States of America 117 (13) (2020)
Bethany M Moore, Peipei Wang, Pengxiang Fan, Aaron Lee, Bryan Leong, Yann-Ru Lou, Craig A Schenck, Koichi Sugimoto, Robert Last, Melissa D Lehti-Shiu, Cornelius S Barry, Shin-Han Shiu
Within- and cross-species predictions of plant specialized metabolism genes using transfer learning. In silico plants 2 (1) (2020)
Pengxiang Fan, Peipei Wang, Yann-Ru Lou, Bryan J Leong, Bethany M Moore, Craig A Schenck, Rachel Combs, Pengfei Cao, Federica Brandizzi, Shin-Han Shiu, Robert L Last
Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity. eLife 9 (2020)
Wen-Yu Liu, Hsin-Hung Lin, Chun-Ping Yu, Chao-Kang Chang, Hsiang-June Chen, Jinn-Jy Lin, Mei-Yeh Jade Lu, Shih-Long Tu, Shin-Han Shiu, Shu-Hsing Wu, Maurice S B Ku, Wen-Hsiung Li
Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
John P Lloyd, Megan J Bowman, Christina B Azodi, Rosalie P Sowers, Gaurav D Moghe, Kevin L Childs, Shin-Han Shiu
Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae. Scientific reports 9 (1) (2019)
Nicholas L Panchy, Christina B Azodi, Eamon F Winship, Ronan C O'Malley, Shin-Han Shiu
Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication. BMC evolutionary biology 19 (1) (2019)
Bethany M Moore, Peipei Wang, Pengxiang Fan, Bryan J Leong, Craig A Schenck, John P Lloyd, Melissa D Lehti-Shiu, Robert L Last, Eran Pichersky, Shin-Han Shiu
Robust predictions of specialized metabolism genes through machine learning. Proceedings of the National Academy of Sciences of the United States of America 116 (6) (2019)
Christina B Azodi, Jeremy Pardo, Robert VanBuren, Gustavo de Los Campos, Shin-Han Shiu
Transcriptome-Based Prediction of Complex Traits in Maize. The Plant cell 32 (1) (2019)
Yao-Ming Chang, Hsin-Hung Lin, Wen-Yu Liu, Chun-Ping Yu, Hsiang-June Chen, Putu Puja Wartini, Yi-Ying Kao, Yeh-Hua Wu, Jinn-Jy Lin, Mei-Yeh Jade Lu, Shih-Long Tu, Shu-Hsing Wu, Shin-Han Shiu, Maurice S B Ku, Wen-Hsiung Li
Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. Proceedings of the National Academy of Sciences of the United States of America 116 (8) (2019)
Christina B Azodi, Emily Bolger, Andrew McCarren, Mark Roantree, Gustavo de Los Campos, Shin-Han Shiu
Benchmarking Parametric and Machine Learning Models for Genomic Prediction of Complex Traits. G3 (Bethesda, Md.) 9 (11) (2019)
Cheng Peng, Christina B Azodi, Shin-Han Shiu
Cis-Regulatory Code for Predicting Plant Cell-Type Transcriptional Response to High Salinity. Plant physiology 181 (4) (2019)
Ming-Jung Liu, Koichi Sugimoto, Sahra Uygun, Nicholas L Panchy, Michael S Campbell, Mark Yandell, Gregg A Howe, Shin-Han Shiu
Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato. The Plant cell 30 (7) (2018)
Chia-Hong Tsai, Sahra Uygun, Rebecca L Roston, Shin-Han Shiu, Christoph Benning
Recovery from N Deprivation Is a Transcriptionally and Functionally Distinct State in Chlamydomonas. Plant physiology 176 (3) (2017)
Cheng Peng, Alexander E Seddon, Christina B Azodi, Shin-Han Shiu
Predictive Models of Spatial Transcriptional Response to High Salinity. Plant physiology 174 (1) (2017)
Nicholas L Panchy, Melissa D Lehti-Shiu, Shin-Han Shiu
Evolution of Gene Duplication in Plants. Plant physiology 171 (4) (2016)
Tiffany L Liu, Linsey Newton, Ming-Jung Liu, Shin-Han Shiu, Eva M Farré
A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis. Plant physiology 170 (1) (2015)
Melissa D Lehti-Shiu, Cheng Peng, Gaurav D Moghe, Nicholas Panchy, Liang Fang, David E Hufnagel, Hannah L Jasicki, Michael Feig, Shin-Han Shiu
Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant physiology 168 (4) (2015)
John P Lloyd, Alexander E Seddon, Gaurav D Moghe, Matthew C Simenc, Shin-Han Shiu
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes. The Plant cell 27 (8) (2015)
Cheng Peng, Shin-Han Shiu, Robert L Last
The Impact of the Branched-Chain Ketoacid Dehydrogenase Complex on Amino Acid Homeostasis in Arabidopsis. Plant physiology 169 (3) (2015)
Nicholas Panchy, Guangxi Wu, Linsey Newton, Chia-Hong Tsai, Jin Chen, Christoph Benning, Eva M Farré, Shin-Han Shiu
Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii. G3 (Bethesda, Md.) 4 (12) (2014)

Shin-Han Shiu.css-eqlu8i{font-size:small;padding-left:4px;} (Sahra Uygun)

Publication Activity (10 Years)

Top Topics

Top Venues

Shin-Han Shiu (Sahra Uygun)