Yasushi Ishihama

ResearcherID Researcher Name Resolver ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 52

Top Venues

Nature communications

Nature

Journal of proteome research

Analytical chemistry

京都大学 / Kyoto University

Kyoto University (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

京都大学 / Kyoto University Oct 01 2010

Japan

教授 / Professor :: 薬学研究科 / Graduate Schools of Pharmaceutical Sciences

Education History

Kyoto University Apr 01 1990 - Mar 27 1992

Japan

MSC :: Graduate School of Engineering

Kyoto University Apr 01 1986 - Mar 31 1990

Japan

BSC :: Department of Industrial Chemistry

Publications

Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature 631 (8019) (2024)
Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach
Pathogenic mutations of human phosphorylation sites affect protein-protein interactions. Nature communications 15 (1) (2024)
Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach
Pathogenic mutations of human phosphorylation sites affect protein-protein interactions. Nature communications 15 (1) (2024)
Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach
Pathogenic mutations of human phosphorylation sites affect protein-protein interactions. Nature communications 15 (1) (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature (2024)
Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach
Pathogenic mutations of human phosphorylation sites affect protein-protein interactions. Nature communications 15 (1) (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature 631 (8019) (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature 631 (8019) (2024)
Ryota Tomioka, Ayana Tomioka, Kosuke Ogata, Hsin-Ju Chan, Li-Yu Chen, Ulises H Guzman, Yue Xuan, Jesper Velgaard Olsen, Yi-Ju Chen, Yasushi Ishihama
Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature 631 (8019) (2024)
Jun Inamo, Akari Suzuki, Mahoko Takahashi Ueda, Kensuke Yamaguchi, Hiroshi Nishida, Katsuya Suzuki, Yuko Kaneko, Tsutomu Takeuchi, Hiroaki Hatano, Kazuyoshi Ishigaki, Yasushi Ishihama, Kazuhiko Yamamoto, Yuta Kochi
Long-read sequencing for 29 immune cell subsets reveals disease-linked isoforms. Nature communications 15 (1) (2024)
Jun Inamo, Akari Suzuki, Mahoko Takahashi Ueda, Kensuke Yamaguchi, Hiroshi Nishida, Katsuya Suzuki, Yuko Kaneko, Tsutomu Takeuchi, Hiroaki Hatano, Kazuyoshi Ishigaki, Yasushi Ishihama, Kazuhiko Yamamoto, Yuta Kochi
Long-read sequencing for 29 immune cell subsets reveals disease-linked isoforms. Nature communications 15 (1) (2024)
Shunsuke Takagi, Nobuyuki Suzuki, Yasushi Ishihama
Revisiting Protein Reversed-Phase Chromatography for Bottom-Up Proteomics. Journal of proteome research (2024)
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano, Yoshitaka Katou, Manami Mizuyama, Ayaka Kitamura, Pimpitcha Puangsricharoen, Chika Yamashiro, Bo Hu, Ken Mizuta, Taro Tsujimura, Takuya Yamamoto, Kosuke Ogata, Yasushi Ishihama, Mitinori Saitou
In vitro reconstitution of epigenetic reprogramming in the human germ line. Nature 631 (8019) (2024)
Jun Inamo, Akari Suzuki, Mahoko Takahashi Ueda, Kensuke Yamaguchi, Hiroshi Nishida, Katsuya Suzuki, Yuko Kaneko, Tsutomu Takeuchi, Hiroaki Hatano, Kazuyoshi Ishigaki, Yasushi Ishihama, Kazuhiko Yamamoto, Yuta Kochi
Long-read sequencing for 29 immune cell subsets reveals disease-linked isoforms. Nature communications 15 (1) (2024)
Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach
Pathogenic mutations of human phosphorylation sites affect protein-protein interactions. Nature communications 15 (1) (2024)
Nozomi Ugajin, Koshi Imami, Hiraku Takada, Yasushi Ishihama, Shinobu Chiba, Yuichiro Mishima
Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development. RNA (New York, N.Y.) (2023)
Yuka Li, Eisuke Kanao, Tomoyoshi Yamano, Yasushi Ishihama, Koshi Imami
TurboID-EV: Proteomic Mapping of Recipient Cellular Proteins Proximal to Small Extracellular Vesicles. Analytical chemistry (2023)
Hiroshi Nishida, Eisuke Kanao, Yasushi Ishihama
Centrifugal Gel Crushing Tips for Gel-Based Proteome Analysis. Analytical chemistry (2023)
Tomoya Niinae, Naoyuki Sugiyama, Yasushi Ishihama
Validity of the cell-extracted proteome as a substrate pool for exploring phosphorylation motifs of kinases. Genes to cells : devoted to molecular & cellular mechanisms (2023)
Ana Martínez-Val, Kyle Fort, Claire Koenig, Leander Van der Hoeven, Giulia Franciosa, Thomas Moehring, Yasushi Ishihama, Yi-Ju Chen, Alexander A Makarov, Yue Xuan, Jesper Velgaard Olsen
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids. Nature communications 14 (1) (2023)
Kosuke Ogata, Shunsuke Takagi, Naoyuki Sugiyama, Yasushi Ishihama
Motif-Targeting Phosphoproteome Analysis of Cancer Cells for Profiling Kinase Inhibitors. Cancers 15 (1) (2022)
Hiroki Takahashi, Ge Yang, Takeshi Yoneshiro, Yohei Abe, Ryo Ito, Chaoran Yang, Junna Nakazono, Mayumi Okamoto-Katsuyama, Aoi Uchida, Makoto Arai, Hitomi Jin, Hyunmi Choi, Myagmar Tumenjargal, Shiyu Xie, Ji Zhang, Hina Sagae, Yanan Zhao, Rei Yamaguchi, Yu Nomura, Yuichi Shimizu, Kaito Yamada, Satoshi Yasuda, Hitoshi Kurumizaka, Toshiya Tanaka, Youichiro Wada, Tatsuhiko Kodama, Hiroyuki Aburatani, Min-Sheng Zhu, Takeshi Inagaki, Timothy F Osborne, Takeshi Kawamura, Yasushi Ishihama, Yoshihiro Matsumura, Juro Sakai
MYPT1-PP1β phosphatase negatively regulates both chromatin landscape and co-activator recruitment for beige adipogenesis. Nature communications 13 (1) (2022)
Yee Kien Chong, Sarang Tartey, Yuki Yoshikawa, Koshi Imami, Songling Li, Masanori Yoshinaga, Ai Hirabayashi, Guohao Liu, Alexis Vandenbon, Fabian Hia, Takuya Uehata, Takashi Mino, Yutaka Suzuki, Takeshi Noda, Dominique Ferrandon, Daron M Standley, Yasushi Ishihama, Osamu Takeuchi
Cyclin J-CDK complexes limit innate immune responses by reducing proinflammatory changes in macrophage metabolism. Science signaling 15 (729) (2022)
Kosuke Ogata, Shunsuke Takagi, Naoyuki Sugiyama, Yasushi Ishihama
Motif-Targeting Phosphoproteome Analysis of Cancer Cells for Profiling Kinase Inhibitors. Cancers 15 (1) (2022)
Taylor Battellino, Kosuke Ogata, Victor Spicer, Yasushi Ishihama, Oleg V Krokhin
Acetic Acid Ion Pairing Additive for Reversed-Phase HPLC Improves Detection Sensitivity in Bottom-up Proteomics Compared to Formic Acid. Journal of proteome research (2022)
Kosuke Ogata, Shunsuke Takagi, Naoyuki Sugiyama, Yasushi Ishihama
Motif-Targeting Phosphoproteome Analysis of Cancer Cells for Profiling Kinase Inhibitors. Cancers 15 (1) (2022)
Jun-Yi Liu, Tsuyoshi Inoshita, Kahori Shiba-Fukushima, Shigeharu Yoshida, Kosuke Ogata, Yasushi Ishihama, Yuzuru Imai, Nobutaka Hattori
Ubiquitination at the lysine 27 residue of the Parkin ubiquitin-like domain is suggestive of a new mechanism of Parkin activation. Human molecular genetics 31 (15) (2022)
Chih-Hsiang Chang, Darien Yeung, Victor Spicer, Kosuke Ogata, Oleg V Krokhin, Yasushi Ishihama
Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry. Journal of proteome research (2021)
Kosuke Ogata, Chia-Feng Tsai, Yasushi Ishihama
Nanoscale Solid-Phase Isobaric Labeling for Multiplexed Quantitative Phosphoproteomics. Journal of proteome research 20 (8) (2021)
Hiroshi Nishida, Yasushi Ishihama
One-Step Isolation of Protein C-Terminal Peptides from V8 Protease-Digested Proteins by Metal Oxide-Based Ligand-Exchange Chromatography. Analytical chemistry 94 (2) (2021)
Pasrawin Taechawattananant, Kazuyoshi Yoshii, Yasushi Ishihama
Peak Identification and Quantification by Proteomic Mass Spectrogram Decomposition. Journal of proteome research 20 (5) (2021)
Kotaro Akaki, Kosuke Ogata, Yuhei Yamauchi, Noriki Iwai, Ka Man Tse, Fabian Hia, Atsushi Mochizuki, Yasushi Ishihama, Takashi Mino, Osamu Takeuchi
IRAK1-dependent Regnase-1-14-3-3 complex formation controls Regnase-1-mediated mRNA decay. eLife 10 (2021)
Yukako Oda, Chisato Takahashi, Shota Harada, Shun Nakamura, Daxiao Sun, Kazumi Kiso, Yuko Urata, Hitoshi Miyachi, Yoshinori Fujiyoshi, Alf Honigmann, Seiichi Uchida, Yasushi Ishihama, Fumiko Toyoshima
Discovery of anti-inflammatory physiological peptides that promote tissue repair by reinforcing epithelial barrier formation. Science advances 7 (47) (2021)
Ginto George, Satoshi Ninagawa, Hirokazu Yagi, Taiki Saito, Tokiro Ishikawa, Tetsushi Sakuma, Takashi Yamamoto, Koshi Imami, Yasushi Ishihama, Koichi Kato, Tetsuya Okada, Kazutoshi Mori
EDEM2 stably disulfide-bonded to TXNDC11 catalyzes the first mannose trimming step in mammalian glycoprotein ERAD. eLife 9 (2020)
Kosuke Ogata, Yasushi Ishihama
Extending the Separation Space with Trapped Ion Mobility Spectrometry Improves the Accuracy of Isobaric Tag-Based Quantitation in Proteomic LC/MS/MS. Analytical chemistry 92 (12) (2020)
Satoshi Ninagawa, Seiichiro Tada, Masaki Okumura, Kenta Inoguchi, Misaki Kinoshita, Shingo Kanemura, Koshi Imami, Hajime Umezawa, Tokiro Ishikawa, Robert B Mackin, Seiji Torii, Yasushi Ishihama, Kenji Inaba, Takayuki Anazawa, Takahiko Nagamine, Kazutoshi Mori
Antipsychotic olanzapine-induced misfolding of proinsulin in the endoplasmic reticulum accounts for atypical development of diabetes. eLife 9 (2020)
Chih-Hsiang Chang, Hsin-Yi Chang, Juri Rappsilber, Yasushi Ishihama
Isolation of acetylated and unmodified protein N-terminal peptides by strong cation exchange chromatographic separation of TrypN-digested peptides. Molecular & cellular proteomics : MCP (2020)
Nailis Syifa, Jhih-Tian Yang, Chang-Shiann Wu, Miao-Hsia Lin, Wan-Ling Wu, Cheng-Wei Lai, Sheng-Hsuan Ku, Suh-Yuen Liang, Yu-Chun Hung, Chia-Te Chou, Chien-Sheng Wang, Yasushi Ishihama, Jiahn-Haur Liao, Shih-Hsiung Wu, Tzu-Hua Wu
Phosphoproteomics and Bioinformatics Analyses Reveal Key Roles of GSK-3 and AKAP4 in Mouse Sperm Capacitation. International journal of molecular sciences 21 (19) (2020)
Takeshi Masuda, Naoyuki Sugiyama, Masaru Tomita, Sumio Ohtsuki, Yasushi Ishihama
Mass Spectrometry-Compatible Subcellular Fractionation for Proteomics. Journal of proteome research 19 (1) (2019)
Mio Iwasaki, Tsuyoshi Tabata, Yuka Kawahara, Yasushi Ishihama, Masato Nakagawa
Removal of Interference MS/MS Spectra for Accurate Quantification in Isobaric Tag-Based Proteomics. Journal of proteome research 18 (6) (2019)
Naoyuki Sugiyama, Haruna Imamura, Yasushi Ishihama
Large-scale Discovery of Substrates of the Human Kinome. Scientific reports 9 (1) (2019)
Naoyuki Sugiyama, Satomi Miyake, Miao-Hsia Lin, Masaki Wakabayashi, Hiroyuki Marusawa, Shin Nishiumi, Masaru Yoshida, Yasushi Ishihama
Comparative proteomics of Helicobacter pylori strains reveals geographical features rather than genomic variations. Genes to cells : devoted to molecular & cellular mechanisms 24 (2) (2019)
Sven H Giese, Yasushi Ishihama, Juri Rappsilber
Peptide Retention in Hydrophilic Strong Anion Exchange Chromatography Is Driven by Charged and Aromatic Residues. Analytical chemistry 90 (7) (2018)
Hiroyuki Takatsu, Masahiro Takayama, Tomoki Naito, Naoto Takada, Kazuya Tsumagari, Yasushi Ishihama, Kazuhisa Nakayama, Hye-Won Shin
Phospholipid flippase ATP11C is endocytosed and downregulated following Ca2+-mediated protein kinase C activation. Nature communications 8 (1) (2017)
Haruna Imamura, Omar Wagih, Tomoya Niinae, Naoyuki Sugiyama, Pedro Beltrao, Yasushi Ishihama
Identifications of Putative PKA Substrates with Quantitative Phosphoproteomics and Primary-Sequence-Based Scoring. Journal of proteome research 16 (4) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yasushi Ishihama