Shuangge Ma

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 70

Top Topics

Gene Expression

Top Venues

Statistics in medicine

Genetic epidemiology

Briefings in bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Xin Yuan, Yanran Ma, Ruitian Gao, Shuya Cui, Yifan Wang, Botao Fa, Shiyang Ma, Ting Wei, Shuangge Ma, Zhangsheng Yu
HEARTSVG: a fast and accurate method for identifying spatially variable genes in large-scale spatial transcriptomics. Nature communications 15 (1) (2024)
Wei Han, Sanguo Zhang, Shuangge Ma, Mingyang Ren
Information-incorporated sparse hierarchical cancer heterogeneity analysis. Statistics in medicine 43 (11) (2024)
Rong Li, Shaodong Xu, Yang Li, Zuojian Tang, Di Feng, James Cai, Shuangge Ma
Incorporating prior information in gene expression network-based cancer heterogeneity analysis. Biostatistics (Oxford, England) (2024)
Wei Han, Sanguo Zhang, Shuangge Ma, Mingyang Ren
Information-incorporated sparse hierarchical cancer heterogeneity analysis. Statistics in medicine (2024)
Shuangge Ma
Editorial. Briefings in bioinformatics 25 (5) (2024)
Xin Yuan, Yanran Ma, Ruitian Gao, Shuya Cui, Yifan Wang, Botao Fa, Shiyang Ma, Ting Wei, Shuangge Ma, Zhangsheng Yu
HEARTSVG: a fast and accurate method for identifying spatially variable genes in large-scale spatial transcriptomics. Nature communications 15 (1) (2024)
Yuwen Liu, Jie Ren, Shuangge Ma, Cen Wu
The spike-and-slab quantile LASSO for robust variable selection in cancer genomics studies. Statistics in medicine (2024)
Xin Yuan, Yanran Ma, Ruitian Gao, Shuya Cui, Yifan Wang, Botao Fa, Shiyang Ma, Ting Wei, Shuangge Ma, Zhangsheng Yu
HEARTSVG: a fast and accurate method for identifying spatially variable genes in large-scale spatial transcriptomics. Nature communications 15 (1) (2024)
Shuni Wu, Yaqing Xu, Qingzhao Zhang, Shuangge Ma
Gene-environment interaction analysis via deep learning. Genetic epidemiology 47 (3) (2023)
Kuangnan Fang, Jingmao Li, Qingzhao Zhang, Yaqing Xu, Shuangge Ma
Pathological imaging-assisted cancer gene-environment interaction analysis. Biometrics (2023)
Shuni Wu, Yaqing Xu, Qingzhao Zhang, Shuangge Ma
Gene-environment interaction analysis via deep learning. Genetic epidemiology 47 (3) (2023)
Shuni Wu, Yaqing Xu, Qingzhao Zhang, Shuangge Ma
Gene-environment interaction analysis via deep learning. Genetic epidemiology 47 (3) (2023)
Shuangge Ma
Editorial. Briefings in bioinformatics (2023)
Mengyun Wu, Fan Wang, Yeheng Ge, Shuangge Ma, Yang Li
Bi-level structured functional analysis for genome-wide association studies. Biometrics (2023)
Shuni Wu, Yaqing Xu, Qingzhao Zhang, Shuangge Ma
Gene-environment interaction analysis via deep learning. Genetic epidemiology (2023)
Mengyun Wu, Fan Wang, Yeheng Ge, Shuangge Ma, Yang Li
Bi-level structured functional analysis for genome-wide association studies. Biometrics (2023)
Shuni Wu, Yaqing Xu, Qingzhao Zhang, Shuangge Ma
Gene-environment interaction analysis via deep learning. Genetic epidemiology 47 (3) (2023)
Kuangnan Fang, Jingmao Li, Qingzhao Zhang, Yaqing Xu, Shuangge Ma
Pathological imaging-assisted cancer gene-environment interaction analysis. Biometrics (2023)
Xing Qin, Shuangge Ma, Mengyun Wu
Two-level Bayesian interaction analysis for survival data incorporating pathway information. Biometrics (2022)
Xiaoyan Wang, Hongduo Liu, Shuangge Ma
GEInfo: an R package for gene-environment interaction analysis incorporating prior information. Bioinformatics (Oxford, England) 38 (11) (2022)
Jiping Wang, Hongmin Liang, Qingzhao Zhang, Shuangge Ma
Replicability in cancer omics data analysis: measures and empirical explorations. Briefings in bioinformatics 23 (5) (2022)
Kuangnan Fang, Rui Ren, Qingzhao Zhang, Shuangge Ma
iSFun: an R package for integrative dimension reduction analysis. Bioinformatics (Oxford, England) 38 (11) (2022)
Chenjin Ma, Mengyun Wu, Shuangge Ma
Analysis of cancer omics data: a selective review of statistical techniques. Briefings in bioinformatics 23 (2) (2022)
Mengque Liu, Qingzhao Zhang, Shuangge Ma
A tree-based gene-environment interaction analysis with rare features. Statistical analysis and data mining 15 (5) (2022)
Fei Zhou, Xi Lu, Jie Ren, Kun Fan, Shuangge Ma, Cen Wu
Sparse group variable selection for gene-environment interactions in the longitudinal study. Genetic epidemiology 46 (5-6) (2022)
Xing Qin, Shuangge Ma, Mengyun Wu
Two-level Bayesian interaction analysis for survival data incorporating pathway information. Biometrics (2022)
Yunju Im, Yuan Huang, Jian Huang, Shuangge Ma
Bayesian hierarchical finite mixture of regression for histopathological imaging-based cancer data analysis. Statistics in medicine 41 (6) (2022)
Yang Li, Shaodong Xu, Shuangge Ma, Mengyun Wu
Network-based cancer heterogeneity analysis incorporating multi-view of prior information. Bioinformatics (Oxford, England) 38 (10) (2022)
Jie Ren, Fei Zhou, Xiaoxi Li, Shuangge Ma, Yu Jiang, Cen Wu
Robust Bayesian variable selection for gene-environment interactions. Biometrics (2022)
Xing Qin, Shuangge Ma, Mengyun Wu
Gene-gene interaction analysis incorporating network information via a structured Bayesian approach. Statistics in medicine 40 (29) (2021)
Huangdi Yi, Shuangge Ma
Assisted differential network analysis for gene expression data. Genetic epidemiology 45 (6) (2021)
Mingyang Ren, Qingzhao Zhang, Sanguo Zhang, Tingyan Zhong, Jian Huang, Shuangge Ma
Hierarchical cancer heterogeneity analysis based on histopathological imaging features. Biometrics (2021)
Sanguo Zhang, Xiaonan Hu, Ziye Luo, Yu Jiang, Yifan Sun, Shuangge Ma
Biomarker-guided heterogeneity analysis of genetic regulations via multivariate sparse fusion. Statistics in medicine 40 (17) (2021)
Mingyang Ren, Sanguo Zhang, Qingzhao Zhang, Shuangge Ma
Gaussian graphical model-based heterogeneity analysis via penalized fusion. Biometrics (2021)
Hao Mei, Ruofan Jia, Guanzhong Qiao, Zhenqiu Lin, Shuangge Ma
Human disease clinical treatment network for the elderly: analysis of the medicare inpatient length of stay and readmission data. Biometrics (2021)
Yuping Cai, Daniel J Kim, Takehiro Takahashi, David I Broadhurst, Hong Yan, Shuangge Ma, Nicholas J W Rattray, Arnau Casanovas-Massana, Benjamin Israelow, Jonathan Klein, Carolina Lucas, Tianyang Mao, Adam J Moore, M Catherine Muenker, Ji Eun Oh, Julio Silva, Patrick Wong, null null, Albert I Ko, Sajid A Khan, Akiko Iwasak, Caroline H Johnson
Kynurenic acid may underlie sex-specific immune responses to COVID-19. Science signaling 14 (690) (2021)
Huangdi Yi, Qingzhao Zhang, Cunjie Lin, Shuangge Ma
Information-incorporated Gaussian graphical model for gene expression data. Biometrics (2021)
Huangdi Yi, Qingzhao Zhang, Yifan Sun, Shuangge Ma
Assisted estimation of gene expression graphical models. Genetic epidemiology 45 (4) (2021)
Yaqing Xu, Mengyun Wu, Shuangge Ma
Multidimensional molecular measurements-environment interaction analysis for disease outcomes. Biometrics (2021)
Hao Mei, Ruofan Jia, Guanzhong Qiao, Zhenqiu Lin, Shuangge Ma
Human disease clinical treatment network for the elderly: The analysis of medicare inpatient length of stay data. Statistics in medicine 40 (8) (2021)
Weijuan Liang, Shuangge Ma, Qingzhao Zhang, Tingyu Zhu
Integrative sparse partial least squares. Statistics in medicine 40 (9) (2021)
Wenjiang Fu, Junyu Ding, Kuikui Gao, Shuangge Ma, Lu Tian
A likelihood ratio test on temporal trends in age-period-cohort models with applications to the disparities of heart disease mortality among US populations and comparison with Japan. Statistics in medicine 40 (3) (2020)
Baihua He, Tingyan Zhong, Jian Huang, Yanyan Liu, Qingzhao Zhang, Shuangge Ma
Histopathological imaging-based cancer heterogeneity analysis via penalized fusion with model averaging. Biometrics (2020)
Chenjin Ma, Yang Li, BenChang Shia, Shuangge Ma
Human disease cost network analysis. Statistics in medicine 39 (9) (2020)
Mengyun Wu, Qingzhao Zhang, Shuangge Ma
Structured gene-environment interaction analysis. Biometrics 76 (1) (2019)
Xinyan Fan, Kuangnan Fang, Shuangge Ma, Shuaichao Wang, Qingzhao Zhang
Assisted graphical model for gene expression data analysis. Statistics in medicine 38 (13) (2019)
Sanguo Zhang, Yuan Xue, Qingzhao Zhang, Chenjin Ma, Mengyun Wu, Shuangge Ma
Identification of gene-environment interactions with marginal penalization. Genetic epidemiology 44 (2) (2019)
Xiaoyan Wang, Yonghong Xu, Shuangge Ma
Identifying gene-environment interactions incorporating prior information. Statistics in medicine 38 (9) (2019)
Jie Ren, Fei Zhou, Xiaoxi Li, Qi Chen, Hongmei Zhang, Shuangge Ma, Yu Jiang, Cen Wu
Semiparametric Bayesian variable selection for gene-environment interactions. Statistics in medicine 39 (5) (2019)
Mengyun Wu, Shuangge Ma
Robust semiparametric gene-environment interaction analysis using sparse boosting. Statistics in medicine 38 (23) (2019)
Yaqing Xu, Tingyan Zhong, Mengyun Wu, Shuangge Ma
Histopathological Imaging⁻Environment Interactions in Cancer Modeling. Cancers 11 (4) (2019)
Xiaochen Zhang, Qingzhao Zhang, Xiaofeng Wang, Shuangge Ma, Kuangnan Fang
Structured sparse logistic regression with application to lung cancer prediction using breath volatile biomarkers. Statistics in medicine 39 (7) (2019)
Yang Li, Rong Li, Cunjie Lin, Yichen Qin, Shuangge Ma
Penalized integrative semiparametric interaction analysis for multiple genetic datasets. Statistics in medicine 38 (17) (2019)
Jie Ren, Yinhao Du, Shaoyu Li, Shuangge Ma, Yu Jiang, Cen Wu
Robust network-based regularization and variable selection for high-dimensional genomic data in cancer prognosis. Genetic epidemiology 43 (3) (2019)
Xinyan Fan, Kuangnan Fang, Shuangge Ma, Qingzhao Zhang
Integrating approximate single factor graphical models. Statistics in medicine 39 (2) (2019)
Yifan Sun, Zhengyang Sun, Yu Jiang, Yang Li, Shuangge Ma
An integrative sparse boosting analysis of cancer genomic commonality and difference. Statistical methods in medical research 29 (5) (2019)
Yifan Sun, Yu Jiang, Yang Li, Shuangge Ma
Identification of cancer omics commonality and difference via community fusion. Statistics in medicine 38 (7) (2018)
Yang Li, Ruofan Bie, Sebastian J Teran Hidalgo, Yichen Qin, Mengyun Wu, Shuangge Ma
Assisted gene expression-based clustering with AWNCut. Statistics in medicine 37 (29) (2018)
Sebastian J Teran Hidalgo, Tingyu Zhu, Mengyun Wu, Shuangge Ma
Overlapping clustering of gene expression data using penalized weighted normalized cut. Genetic epidemiology 42 (8) (2018)
Rui Wang, Chenjin Ma, Kun Jiang, Ming Li, Shuangge Ma
Descriptions of self-treatment for the middle-aged and elderly in Shanxi, China. PloS one 13 (6) (2018)
Sebastian J Teran Hidalgo, Shuangge Ma
Clustering multilayer omics data using MuNCut. BMC genomics 19 (1) (2018)
Yang Li, Yinjun Zhao, Danhui Yi, Xiaojun Wang, Yan Jiang, Yu Wang, Xinchun Liu, Shuangge Ma
Differences exist across insurance schemes in China post-consolidation. PloS one 12 (11) (2017)
Cen Wu, Yu Jiang, Jie Ren, Yuehua Cui, Shuangge Ma
Dissecting gene-environment interactions: A penalized robust approach accounting for hierarchical structures. Statistics in medicine 37 (3) (2017)
Yangguang Zang, Qing Zhao, Qingzhao Zhang, Yang Li, Sanguo Zhang, Shuangge Ma
Inferring gene regulatory relationships with a high-dimensional robust approach. Genetic epidemiology 41 (5) (2017)
Mengyun Wu, Yangguang Zang, Sanguo Zhang, Jian Huang, Shuangge Ma
Accommodating missingness in environmental measurements in gene-environment interaction analysis. Genetic epidemiology 41 (6) (2017)
Mu Yue, Jialiang Li, Shuangge Ma
Sparse boosting for high-dimensional survival data with varying coefficients. Statistics in medicine 37 (5) (2017)
Mengyun Wu, Jian Huang, Shuangge Ma
Identifying gene-gene interactions using penalized tensor regression. Statistics in medicine 37 (4) (2017)
Hao Chai, Xingjie Shi, Qingzhao Zhang, Qing Zhao, Yuan Huang, Shuangge Ma
Analysis of cancer gene expression data with an assisted robust marker identification approach. Genetic epidemiology 41 (8) (2017)
Mengque Liu, Xinyan Fan, Kuangnan Fang, Qingzhao Zhang, Shuangge Ma
Integrative sparse principal component analysis of gene expression data. Genetic epidemiology 41 (8) (2017)
Sebastian J Teran Hidalgo, Mengyun Wu, Shuangge Ma
Assisted clustering of gene expression data using ANCut. BMC genomics 18 (1) (2017)