Jonathan Klein (Jon Klein)

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 27

Top Topics

Immune Response

Anaerobic Digestion

Respiratory Syndrome Coronavirus

Top Venues

Nature genetics

Science immunology

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics 55 (3) (2023)
Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics 55 (3) (2023)
Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics (2023)
Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics 55 (3) (2023)
Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics 55 (3) (2023)
Anis Barmada, Jonathan Klein, Anjali Ramaswamy, Nina N Brodsky, Jillian R Jaycox, Hassan Sheikha, Kate M Jones, Victoria Habet, Melissa Campbell, Tomokazu S Sumida, Amy R Kontorovich, Roosheel S Patel, Carlos R Oliveira, Jeremy M Steele, E Kevin Hall, Mario Pena-Hernandez, Valter Vinícius Silva Monteiro, Carolina Lucas, Aaron M Ring, Saad B Omer, Akiko Iwasak, Inci B Yildirim, Carrie L Lucas
Cytokinopathy with aberrant cytotoxic lymphocytes and profibrotic myeloid response in SARS-CoV-2 mRNA vaccine-associated myocarditis. Science immunology 8 (83) (2023)
Anis Barmada, Jonathan Klein, Anjali Ramaswamy, Nina N Brodsky, Jillian R Jaycox, Hassan Sheikha, Kate M Jones, Victoria Habet, Melissa Campbell, Tomokazu S Sumida, Amy R Kontorovich, Roosheel S Patel, Carlos R Oliveira, Jeremy M Steele, E Kevin Hall, Mario Pena-Hernandez, Valter Vinícius Silva Monteiro, Carolina Lucas, Aaron M Ring, Saad B Omer, Akiko Iwasak, Inci B Yildirim, Carrie L Lucas
Cytokinopathy with aberrant cytotoxic lymphocytes and profibrotic myeloid response in SARS-CoV-2 mRNA vaccine-associated myocarditis. Science immunology 8 (83) (2023)
Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics 55 (3) (2023)
Anis Barmada, Jonathan Klein, Anjali Ramaswamy, Nina N Brodsky, Jillian R Jaycox, Hassan Sheikha, Kate M Jones, Victoria Habet, Melissa Campbell, Tomokazu S Sumida, Amy R Kontorovich, Roosheel S Patel, Carlos R Oliveira, Jeremy M Steele, E Kevin Hall, Mario Pena-Hernandez, Valter Vinícius Silva Monteiro, Carolina Lucas, Aaron M Ring, Saad B Omer, Akiko Iwasak, Inci B Yildirim, Carrie L Lucas
Cytokinopathy with aberrant cytotoxic lymphocytes and profibrotic myeloid response in SARS-CoV-2 mRNA vaccine-associated myocarditis. Science immunology 8 (83) (2023)
Jin Wei, Ajinkya Patil, Clayton K Collings, Mia Madel Alfajaro, Yu Liang, Wesley L Cai, Madison S Strine, Renata B Filler, Peter C DeWeirdt, Ruth E Hanna, Bridget L Menasche, Arya Ökten, Mario A Peña-Hernández, Jonathan Klein, Andrew McNamara, Romel Rosales, Briana L McGovern, M Luis Rodriguez, Adolfo García-Sastre, Kris M White, Yiren Qin, John G Doench, Qin Yan, Akiko Iwasak, Thomas P Zwaka, Jun Qi, Cigall Kadoch, Craig B Wilen
Pharmacological disruption of mSWI/SNF complex activity restricts SARS-CoV-2 infection. Nature genetics 55 (3) (2023)
Anis Barmada, Jonathan Klein, Anjali Ramaswamy, Nina N Brodsky, Jillian R Jaycox, Hassan Sheikha, Kate M Jones, Victoria Habet, Melissa Campbell, Tomokazu S Sumida, Amy R Kontorovich, Roosheel S Patel, Carlos R Oliveira, Jeremy M Steele, E Kevin Hall, Mario Pena-Hernandez, Valter Vinícius Silva Monteiro, Carolina Lucas, Aaron M Ring, Saad B Omer, Akiko Iwasak, Inci B Yildirim, Carrie L Lucas
Cytokinopathy with aberrant cytotoxic lymphocytes and profibrotic myeloid response in SARS-CoV-2 mRNA vaccine-associated myocarditis. Science immunology 8 (83) (2023)
Anis Barmada, Jonathan Klein, Anjali Ramaswamy, Nina N Brodsky, Jillian R Jaycox, Hassan Sheikha, Kate M Jones, Victoria Habet, Melissa Campbell, Tomokazu S Sumida, Amy R Kontorovich, Roosheel S Patel, Carlos R Oliveira, Jeremy M Steele, E Kevin Hall, Mario Pena-Hernandez, Valter Vinícius Silva Monteiro, Carolina Lucas, Aaron M Ring, Saad B Omer, Akiko Iwasak, Inci B Yildirim, Carrie L Lucas
Cytokinopathy with aberrant cytotoxic lymphocytes and profibrotic myeloid response in SARS-CoV-2 mRNA vaccine-associated myocarditis. Science immunology 8 (83) (2023)
Jonathan Klein, Jamie Wood, Jillian Jaycox, Rahul Madhav Dhodapkar, Peiwen Lu, Jeff R Gehlhausen, Alexandra Tabachnikova, Kerrie Greene, Laura Tabacof, Amyn A Malik, Valter Vinícius Silva Monteiro, Julio Silva, Kathy Kamath, Minlu Zhang, Abhilash Dhal, Isabel M Ott, Gabrielee Valle, Mario Peña-Hernandez, Tianyang Mao, Bornali Bhattacharjee, Takehiro Takahashi, Carolina Lucas, Eric Song, Dayna Mccarthy, Erica Breyman, Jenna Tosto-Mancuso, Yile Dai, Emily Perotti, Koray Akduman, Tiffany J Tzeng, Lan Xu, Anna C Geraghty, Michelle Monje, Inci B Yildirim, John Shon, Ruslan Medzhitov, Denyse Lutchmansingh, Jennifer D Possick, Naftali Kaminski, Saad B Omer, Harlan M Krumholz, Leying Guan, Charles Dela Cruz, David van Dijk, Aaron M Ring, David F Putrino, Akiko Iwasak
Distinguishing features of Long COVID identified through immune profiling. Nature (2023)
Shiv Gandhi, Jonathan Klein, Alexander J Robertson, Mario A Peña-Hernández, Michelle J Lin, Pavitra Roychoudhury, Peiwen Lu, John Fournier, David Ferguson, Shah A K Mohamed Bakhash, M Catherine Muenker, Ariktha Srivathsan, Elsio A Wunder, Nicholas Kerantzas, Wenshuai Wang, Brett Lindenbach, Anna Pyle, Craig B Wilen, Onyema Ogbuagu, Alexander L Greninger, Akiko Iwasak, Wade L Schulz, Albert I Ko
De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report. Nature communications 13 (1) (2022)
Manik Kuchroo, Jessie Huang, Patrick Wong, Jean-Christophe Grenier, Dennis Shung, Alexander Tong, Carolina Lucas, Jonathan Klein, Daniel B Burkhardt, Scott A Gigante, Abhinav Godavarthi, Bastian Rieck, Benjamin Israelow, Michael Simonov, Tianyang Mao, Ji Eun Oh, Julio Silva, Takehiro Takahashi, Camila D Odio, Arnau Casanovas-Massana, John Fournier, null null, Shelli F Farhadian, Charles S Dela Cruz, Albert I Ko, Matthew J Hirn, F Perry Wilson, Julie G Hussin, Guy Wolf, Akiko Iwasak, Smita Krishnaswamy
Multiscale PHATE identifies multimodal signatures of COVID-19. Nature biotechnology 40 (5) (2022)
Lucie Bernard-Raichon, Mericien Venzon, Jonathan Klein, Jordan E Axelrad, Chenzhen Zhang, Alexis P Sullivan, Grant A Hussey, Arnau Casanovas-Massana, Maria G Noval, Ana M Valero-Jimenez, Juan Gago, Gregory Putzel, Alejandro Pironti, Evan Wilder, null null, Lorna E Thorpe, Dan R Littman, Meike Dittmann, Kenneth A Stapleford, Bo Shopsin, Victor J Torres, Albert I Ko, Akiko Iwasak, Ken Cadwell, Jonas Schluter
Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia. Nature communications 13 (1) (2022)
Jonathan Klein, Anderson Brito, Paul Trubin, Peiwen Lu, Patrick Wong, Tara Alpert, Mario Pena-Hernandez, Winston Haynes, Kathy Kamath, Feimei Liu, Chantal B F Vogels, Joseph R Fauver, Carolina Lucas, Ji Eun Oh, Tianyang Mao, Julio Silva, Chantal B F Vogels, M Catherine Muenker, Arnau Casanovas-Massana, Adam Moore, Mary E Petrone, Chaney Kalinich, null null, Charles Dela Cruz, Shelli F Farhadian, Aaron M Ring, John Shon, Albert I Ko, Nathan D Grubaugh, Benjamin Israelow, Akiko Iwasak, Marwan Mikheal Azar
Longitudinal immune profiling of a SARS-CoV-2 reinfection in a solid organ transplant recipient. Research square (2021)
Carolina Lucas, Jonathan Klein, Maria E Sundaram, Feimei Liu, Patrick Wong, Julio Silva, Tianyang Mao, Ji Eun Oh, Subhasis Mohanty, Jiefang Huang, Maria Tokuyama, Peiwen Lu, Arvind Venkataraman, Annsea Park, Benjamin Israelow, Chantal B F Vogels, M Catherine Muenker, C-Hong Chang, Arnau Casanovas-Massana, Adam J Moore, Joseph Zell, John B Fournier, null null, Chantal B F Vogels, Melissa Campbell, Alfred I Lee, Hyung J Chun, Nathan D Grubaugh, Wade L Schulz, Shelli F Farhadian, Charles Dela Cruz, Aaron M Ring, Albert C Shaw, Adam V Wisnewski, Inci Yildirim, Albert I Ko, Saad B Omer, Akiko Iwasak
Delayed production of neutralizing antibodies correlates with fatal COVID-19. Nature medicine 27 (7) (2021)
Yuping Cai, Daniel J Kim, Takehiro Takahashi, David I Broadhurst, Hong Yan, Shuangge Ma, Nicholas J W Rattray, Arnau Casanovas-Massana, Benjamin Israelow, Jonathan Klein, Carolina Lucas, Tianyang Mao, Adam J Moore, M Catherine Muenker, Ji Eun Oh, Julio Silva, Patrick Wong, null null, Albert I Ko, Sajid A Khan, Akiko Iwasak, Caroline H Johnson
Kynurenic acid may underlie sex-specific immune responses to COVID-19. Science signaling 14 (690) (2021)
Eric Y Wang, Tianyang Mao, Jonathan Klein, Yile Dai, John D Huck, Jillian R Jaycox, Feimei Liu, Ting Zhou, Benjamin Israelow, Patrick Wong, Andreas Coppi, Carolina Lucas, Julio Silva, Ji Eun Oh, Eric Song, Emily S Perotti, Neil S Zheng, Suzanne Fischer, Melissa Campbell, John B Fournier, Chantal B F Vogels, Chantal B F Vogels, Isabel M Ott, Chaney C Kalinich, Mary E Petrone, Anne E Watkins, null null, Charles Dela Cruz, Shelli F Farhadian, Wade L Schulz, Shuangge Ma, Nathan D Grubaugh, Albert I Ko, Akiko Iwasak, Aaron M Ring
Diverse functional autoantibodies in patients with COVID-19. Nature 595 (7866) (2021)
Jonathan Klein, Anderson Fernandes Brito, Paul Trubin, Peiwen Lu, Patrick Wong, Tara Alpert, Mario A Peña-Hernández, Winston Haynes, Kathy Kamath, Feimei Liu, Chantal B F Vogels, Joseph R Fauver, Carolina Lucas, Jieun Oh, Tianyang Mao, Julio Silva, Anne L Wyllie, M Catherine Muenker, Arnau Casanovas-Massana, Adam J Moore, Mary E Petrone, Chaney C Kalinich, null null, Charles Dela Cruz, Shelli Farhadian, Aaron Ring, John Shon, Albert I Ko, Nathan D Grubaugh, Benjamin Israelow, Akiko Iwasak, Marwan M Azar
Case Study: Longitudinal immune profiling of a SARS-CoV-2 reinfection in a solid organ transplant recipient. medRxiv : the preprint server for health sciences (2021)
Mericien Venzon, Lucie Bernard-Raichon, Jonathan Klein, Jordan E Axelrad, Grant Hussey, Alexis Sullivan, Arnau Casanovas-Massana, Maria Noval, Ana Valero-Jimenez, Juan Gago, Evan Wilder, Yale Impact Research Team, Akiko Iwasak, Lorna Thorpe, Dan Littman, Meike Dittmann, Kenneth Stapleford, Bo Shopsin, Victor J Torres, Albert I Ko, Ken Cadwell, Jonas Schluter
Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation. Research square (2021)
Benjamin Israelow, Tianyang Mao, Jonathan Klein, Eric Song, Bridget L Menasché, Saad B Omer, Akiko Iwasak
Adaptive immune determinants of viral clearance and protection in mouse models of SARS-CoV-2. Science immunology 6 (64) (2021)
Winston A Haynes, Kathy Kamath, Joel Bozekowski, Elisabeth Baum-Jones, Melissa Campbell, Arnau Casanovas-Massana, Patrick S Daugherty, Charles S Dela Cruz, Abhilash Dhal, Shelli F Farhadian, Lynn Fitzgibbons, John Fournier, Michael J Tro, Gregory J Jordan, Jonathan Klein, Carolina Lucas, Debra Kessler, Larry L Luchsinger, Brian Martinez, M Catherine Muenker, Lauren Pischel, Jack Reifert, Jaymie R Sawyer, Rebecca Waitz, Elsio A Wunder, Minlu Zhang, null null, Akiko Iwasak, Albert Ko, John C Shon
High-resolution epitope mapping and characterization of SARS-CoV-2 antibodies in large cohorts of subjects with COVID-19. Communications biology 4 (1) (2021)
Anne L Wyllie, John Fournier, Arnau Casanovas-Massana, Melissa Campbell, Maria Tokuyama, Pavithra Vijayakumar, Joshua L Warren, Bertie Geng, M Catherine Muenker, Adam J Moore, Chantal B F Vogels, Mary E Petrone, Isabel M Ott, Peiwen Lu, Arvind Venkataraman, Jonathan Klein, Rebecca Earnest, Michael Simonov, Rupak Datta, Ryan Handoko, Nida Naushad, Lorenzo R Sewanan, Jordan Valdez, Elizabeth B White, Sarah Lapidus, Chaney C Kalinich, Xiaodong Jiang, Daniel J Kim, Eriko Kudo, Melissa Linehan, Tianyang Mao, Miyu Moriyama, Ji E Oh, Annsea Park, Julio Silva, Eric Song, Takehiro Takahashi, Manabu Taura, Orr-El Weizman, Patrick Wong, Yexin Yang, Santos Bermejo, Camila D Odio, Saad B Omer, Charles S Dela Cruz, Shelli Farhadian, Richard A Martinello, Akiko Iwasaki, Nathan D Grubaugh, Albert I Ko
Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2. The New England journal of medicine 383 (13) (2020)
Carolina Lucas, Patrick Wong, Jonathan Klein, Tiago B R Castro, Julio Silva, Maria Sundaram, Mallory K Ellingson, Tianyang Mao, Ji Eun Oh, Benjamin Israelow, Takehiro Takahashi, Maria Tokuyama, Peiwen Lu, Arvind Venkataraman, Annsea Park, Subhasis Mohanty, Haowei Wang, Anne L Wyllie, Chantal B F Vogels, Rebecca Earnest, Sarah Lapidus, Isabel M Ott, Adam J Moore, M Catherine Muenker, John B Fournier, Melissa Campbell, Camila D Odio, Arnau Casanovas-Massana, null null, Roy Herbst, Albert C Shaw, Ruslan Medzhitov, Wade L Schulz, Nathan D Grubaugh, Charles Dela Cruz, Shelli Farhadian, Albert I Ko, Saad B Omer, Akiko Iwasaki
Longitudinal analyses reveal immunological misfiring in severe COVID-19. Nature 584 (7821) (2020)
Takehiro Takahashi, Mallory K Ellingson, Patrick Wong, Benjamin Israelow, Carolina Lucas, Jonathan Klein, Julio Silva, Tianyang Mao, Ji Eun Oh, Maria Tokuyama, Peiwen Lu, Arvind Venkataraman, Annsea Park, Feimei Liu, Amit Meir, Jonathan Sun, Eric Y Wang, Arnau Casanovas-Massana, Chantal B F Vogels, Chantal B F Vogels, Rebecca Earnest, Sarah Lapidus, Isabel M Ott, Adam J Moore, null null, Albert Shaw, John B Fournier, Camila D Odio, Shelli Farhadian, Charles Dela Cruz, Nathan D Grubaugh, Wade L Schulz, Aaron M Ring, Albert I Ko, Saad B Omer, Akiko Iwasak
Sex differences in immune responses that underlie COVID-19 disease outcomes. Nature 588 (7837) (2020)