Shuangjia Zheng

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 16

Top Topics

Top Venues

Journal of chemical information and modeling

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Nature communications

Briefings in bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Jiahua Rao, Jiancong Xie, Qianmu Yuan, Deqin Liu, Zhen Wang, Yutong Lu, Shuangjia Zheng, Yuedong Yang
A variational expectation-maximization framework for balanced multi-scale learning of protein and drug interactions. Nature communications 15 (1) (2024)
Shuangjia Zheng, Jiahua Rao, Jixian Zhang, Lianyu Zhou, Jiancong Xie, Ethan Cohen, Wei Lu, Chengtao Li, Yuedong Yang
Cross-Modal Graph Contrastive Learning with Cellular Images. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (32) (2024)
Shuangjia Zheng, Jiahua Rao, Jixian Zhang, Lianyu Zhou, Jiancong Xie, Ethan Cohen, Wei Lu, Chengtao Li, Yuedong Yang
Cross-Modal Graph Contrastive Learning with Cellular Images. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Shuangjia Zheng, Jiahua Rao, Jixian Zhang, Lianyu Zhou, Jiancong Xie, Ethan Cohen, Wei Lu, Chengtao Li, Yuedong Yang
Cross-Modal Graph Contrastive Learning with Cellular Images. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (32) (2024)
Wei Lu, Jixian Zhang, Weifeng Huang, Ziqiao Zhang, Xiangyu Jia, Zhenyu Wang, Leilei Shi, Chengtao Li, Peter G Wolynes, Shuangjia Zheng
DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model. Nature communications 15 (1) (2024)
Shuangjia Zheng, Jiahua Rao, Jixian Zhang, Lianyu Zhou, Jiancong Xie, Ethan Cohen, Wei Lu, Chengtao Li, Yuedong Yang
Cross-Modal Graph Contrastive Learning with Cellular Images. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 11 (32) (2024)
Wei Lu, Jixian Zhang, Weifeng Huang, Ziqiao Zhang, Xiangyu Jia, Zhenyu Wang, Leilei Shi, Chengtao Li, Peter G Wolynes, Shuangjia Zheng
DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model. Nature communications 15 (1) (2024)
Wei Lu, Jixian Zhang, Weifeng Huang, Ziqiao Zhang, Xiangyu Jia, Zhenyu Wang, Leilei Shi, Chengtao Li, Peter G Wolynes, Shuangjia Zheng
DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model. Nature communications 15 (1) (2024)
Penglei Wang, Shuangjia Zheng, Yize Jiang, Chengtao Li, Junhong Liu, Chang Wen, Atanas Patronov, Dahong Qian, Hongming Chen, Yuedong Yang
Structure-Aware Multimodal Deep Learning for Drug-Protein Interaction Prediction. Journal of chemical information and modeling 62 (5) (2022)
Qianmu Yuan, Sheng Chen, Jiahua Rao, Shuangjia Zheng, Huiying Zhao, Yuedong Yang
AlphaFold2-aware protein-DNA binding site prediction using graph transformer. Briefings in bioinformatics 23 (2) (2022)
Youhai Tan, Lingxue Dai, Weifeng Huang, Yinfeng Guo, Shuangjia Zheng, Jinping Lei, Hongming Chen, Yuedong Yang
DRlinker: Deep Reinforcement Learning for Optimization in Fragment Linking Design. Journal of chemical information and modeling (2022)
Jiahao Wang, Shuangjia Zheng, Jianwen Chen, Yuedong Yang
Meta Learning for Low-Resource Molecular Optimization. Journal of chemical information and modeling 61 (4) (2021)
Shuangjia Zheng, Jiahua Rao, Ying Song, Jixian Zhang, Xianglu Xiao, Evandro Fei Fang, Yuedong Yang, Zhangming Niu
PharmKG: a dedicated knowledge graph benchmark for bomedical data mining. Briefings in bioinformatics 22 (4) (2021)
Lizhao Hu, Yuyao Yang, Shuangjia Zheng, Jun Xu, Ting Ran, Hongming Chen
Kinase Inhibitor Scaffold Hopping with Deep Learning Approaches. Journal of chemical information and modeling 61 (10) (2021)
Shimin Su, Yuyao Yang, Hanlin Gan, Shuangjia Zheng, Fenglong Gu, Chao Zhao, Jun Xu
Predicting the Feasibility of Copper(I)-Catalyzed Alkyne-Azide Cycloaddition Reactions Using a Recurrent Neural Network with a Self-Attention Mechanism. Journal of chemical information and modeling 60 (3) (2020)
Shuangjia Zheng, Jiahua Rao, Zhongyue Zhang, Jun Xu, Yuedong Yang
Predicting Retrosynthetic Reactions Using Self-Corrected Transformer Neural Networks. Journal of chemical information and modeling 60 (1) (2019)