Simon J van Heeringen

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 20

Top Venues

Nucleic acids research

Biochemical Society transactions

Bioinformatics (Oxford, England)

The EMBO journal

Radboud University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Radboud University Aug 1o 2013

Netherlands

Assistant Professor :: Molecular Developmental Biology

Publications

Maarten van der Sande, Siebren Frölich, Simon J van Heeringen
Computational approaches to understand transcription regulation in development. Biochemical Society transactions (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research (2023)
Maarten van der Sande, Siebren Frölich, Simon J van Heeringen
Computational approaches to understand transcription regulation in development. Biochemical Society transactions 51 (1) (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research 51 (3) (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research 51 (3) (2023)
Maarten van der Sande, Siebren Frölich, Simon J van Heeringen
Computational approaches to understand transcription regulation in development. Biochemical Society transactions 51 (1) (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research (2023)
Maarten van der Sande, Siebren Frölich, Simon J van Heeringen
Computational approaches to understand transcription regulation in development. Biochemical Society transactions 51 (1) (2023)
Maarten van der Sande, Siebren Frölich, Simon J van Heeringen
Computational approaches to understand transcription regulation in development. Biochemical Society transactions 51 (1) (2023)
Maarten van der Sande, Siebren Frölich, Tilman Schäfers, Jos G A Smits, Rebecca R Snabel, Sybren Rinzema, Simon J van Heeringen
Seq2science: an end-to-end workflow for functional genomics analysis. PeerJ 11 (2023)
Siebren Frölich, Maarten van der Sande, Tilman Schäfers, Simon J van Heeringen
genomepy: genes and genomes at your fingertips. Bioinformatics (Oxford, England) 39 (3) (2023)
Jos P H Smits, Jieqiong Qu, Felicitas Pardow, Noa J M van den Brink, Diana Rodijk-Olthuis, Ivonne M J J van Vlijmen-Willems, Simon J van Heeringen, Patrick L J M Zeeuwen, Joost Schalkwijk, Huiqing Zhou, Ellen H J van den Bogaard
The aryl hydrocarbon receptor regulates epidermal differentiation through transient activation of TFAP2A. bioRxiv : the preprint server for biology (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research 51 (3) (2023)
Siebren Frölich, Maarten van der Sande, Tilman Schäfers, Simon J van Heeringen
genomepy: genes and genomes at your fingertips. Bioinformatics (Oxford, England) 39 (3) (2023)
Ann Rose Bright, Siebe van Genesen, Qingqing Li, Alexia Grasso, Siebren Frölich, Maarten van der Sande, Simon J van Heeringen, Gert Jan C Veenstra
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. The EMBO journal 40 (9) (2021)
Quan Xu, Georgios Georgiou, Siebren Frölich, Maarten van der Sande, Gert Jan C Veenstra, Huiqing Zhou, Simon J van Heeringen
ANANSE: an enhancer network-based computational approach for predicting key transcription factors in cell fate determination. Nucleic acids research 49 (14) (2021)
Simone Lederer, Tom Heskes, Simon J van Heeringen, Cornelis A Albers
Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis. PloS one 15 (5) (2020)
Matteo Perino, Guido van Mierlo, Ino D Karemaker, Siebe van Genesen, Michiel Vermeulen, Hendrik Marks, Simon J van Heeringen, Gert Jan C Veenstra
MTF2 recruits Polycomb Repressive Complex 2 by helical-shape-selective DNA binding. Nature genetics 50 (7) (2018)
Rose Richardson, Karen Mitchell, Nigel L Hammond, Maria Rosaria Mollo, Evelyn N Kouwenhoven, Niki D Wyatt, Ian J Donaldson, Leo Zeef, Tim Burgis, Rognvald Blance, Simon J van Heeringen, Hendrik G Stunnenberg, Huiqing Zhou, Caterina Missero, Rose Anne Romano, Satrajit Sinha, Michael J Dixon, Jill Dixon
p63 exerts spatio-temporal control of palatal epithelial cell fate to prevent cleft palate. PLoS genetics 13 (6) (2017)
Anke E E G Gudde, Simon J van Heeringen, Amanda I de Oude, Ingeborg D G van Kessel, Joseph Estabrook, Eric T Wang, Bé Wieringa, Derick G Wansink
Antisense transcription of the myotonic dystrophy locus yields low-abundant RNAs with and without (CAG)n repeat. RNA biology 14 (10) (2017)

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Publication Activity (10 Years)

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Simon J van Heeringen