Michiel Vermeulen

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 64

Top Venues

Nature communications

Genome research

Nucleic acids research

The EMBO journal

Radboud Universiteit Nijmegen

Radboud Universiteit Nijmegen (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Radboud Universiteit Nijmegen Feb 01 2014

Netherlands

Full professor :: Molecular Biology

University Medical Center Utrecht Jan 01 2013 - Feb 01 2014

Netherlands

Associate Professor :: Molecular Cancer Research

University Medical Center Utrecht Mar 01 2009 - Dec 31 2012

Netherlands

Assistant Professor :: Molecular Cancer Research

Max-Planck-Gesellschaft Sep 16 2005 - Mar 01 2009

Germany

Post-doc :: Proteomics and Signal Transduction

Education History

Radboud Universiteit Nijmegen Mar 15 2000 - Feb 17 2006

Netherlands

PHD :: Molecular Biology

Radboud Universiteit Nijmegen Sep 01 1995 - Mar 16 2000

Netherlands

MSC

Publications

Diana Llerena Schiffmacher, Shun-Hsiao Lee, Katarzyna W Kliza, Arjan F Theil, Masaki Akita, Angela Helfricht, Karel Bezstarosti, Camila Gonzalo-Hansen, Haico van Attikum, Matty Verlaan-de Vries, Alfred C O Vertegaal, Jan H J Hoeijmakers, Jurgen A Marteijn, Hannes Lans, Jeroen A A Demmers, Michiel Vermeulen, Titia K Sixma, Tomoo Ogi, Wim Vermeulen, Alex Pines
The small CRL4 CSA ubiquitin ligase component DDA1 regulates transcription-coupled repair dynamics. Nature communications 15 (1) (2024)
Diana Llerena Schiffmacher, Shun-Hsiao Lee, Katarzyna W Kliza, Arjan F Theil, Masaki Akita, Angela Helfricht, Karel Bezstarosti, Camila Gonzalo-Hansen, Haico van Attikum, Matty Verlaan-de Vries, Alfred C O Vertegaal, Jan H J Hoeijmakers, Jurgen A Marteijn, Hannes Lans, Jeroen A A Demmers, Michiel Vermeulen, Titia K Sixma, Tomoo Ogi, Wim Vermeulen, Alex Pines
The small CRL4 CSA ubiquitin ligase component DDA1 regulates transcription-coupled repair dynamics. Nature communications 15 (1) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Diana Llerena Schiffmacher, Shun-Hsiao Lee, Katarzyna W Kliza, Arjan F Theil, Masaki Akita, Angela Helfricht, Karel Bezstarosti, Camila Gonzalo-Hansen, Haico van Attikum, Matty Verlaan-de Vries, Alfred C O Vertegaal, Jan H J Hoeijmakers, Jurgen A Marteijn, Hannes Lans, Jeroen A A Demmers, Michiel Vermeulen, Titia K Sixma, Tomoo Ogi, Wim Vermeulen, Alex Pines
The small CRL4 CSA ubiquitin ligase component DDA1 regulates transcription-coupled repair dynamics. Nature communications 15 (1) (2024)
Jeron Venhuizen, Maaike G J M van Bergen, Saskia M Bergevoet, Daan Gilissen, Cornelia G Spruijt, Laura Wingens, Emile van den Akker, Michiel Vermeulen, Joop H Jansen, Joost H A Martens, Bert A van der Reijden
GFI1B and LSD1 repress myeloid traits during megakaryocyte differentiation. Communications biology 7 (1) (2024)
Jeron Venhuizen, Maaike G J M van Bergen, Saskia M Bergevoet, Daan Gilissen, Cornelia G Spruijt, Laura Wingens, Emile van den Akker, Michiel Vermeulen, Joop H Jansen, Joost H A Martens, Bert A van der Reijden
GFI1B and LSD1 repress myeloid traits during megakaryocyte differentiation. Communications biology 7 (1) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research (2024)
Diana Llerena Schiffmacher, Shun-Hsiao Lee, Katarzyna W Kliza, Arjan F Theil, Masaki Akita, Angela Helfricht, Karel Bezstarosti, Camila Gonzalo-Hansen, Haico van Attikum, Matty Verlaan-de Vries, Alfred C O Vertegaal, Jan H J Hoeijmakers, Jurgen A Marteijn, Hannes Lans, Jeroen A A Demmers, Michiel Vermeulen, Titia K Sixma, Tomoo Ogi, Wim Vermeulen, Alex Pines
The small CRL4 CSA ubiquitin ligase component DDA1 regulates transcription-coupled repair dynamics. Nature communications 15 (1) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Diana Llerena Schiffmacher, Shun-Hsiao Lee, Katarzyna W Kliza, Arjan F Theil, Masaki Akita, Angela Helfricht, Karel Bezstarosti, Camila Gonzalo-Hansen, Haico van Attikum, Matty Verlaan-de Vries, Alfred C O Vertegaal, Jan H J Hoeijmakers, Jurgen A Marteijn, Hannes Lans, Jeroen A A Demmers, Michiel Vermeulen, Titia K Sixma, Tomoo Ogi, Wim Vermeulen, Alex Pines
The small CRL4 CSA ubiquitin ligase component DDA1 regulates transcription-coupled repair dynamics. Nature communications 15 (1) (2024)
Jeron Venhuizen, Maaike G J M van Bergen, Saskia M Bergevoet, Daan Gilissen, Cornelia G Spruijt, Laura Wingens, Emile van den Akker, Michiel Vermeulen, Joop H Jansen, Joost H A Martens, Bert A van der Reijden
GFI1B and LSD1 repress myeloid traits during megakaryocyte differentiation. Communications biology 7 (1) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Stacey E P Joosten, Sebastian Gregoricchio, Suzan Stelloo, Elif Yapıcı, Chia-Chi Flora Huang, Kerim Yavuz, Maria Christine Donaldson, Tunç Morova, Umut Berkay Altintas, Yongsoo Kim, Sander Canisius, Cathy B Moelans, Paul J van Diest, Gozde Korkmaz, Nathan A Lack, Michiel Vermeulen, Sabine C Linn, Wilbert Zwart
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions. Genome research 34 (4) (2024)
Roelof A Wester, Hannah K Neikes, Rik G H Lindeboom, Michiel Vermeulen
Quantifying genome-wide transcription factor binding affinities for chromatin using BANC-seq. Nature protocols (2024)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research (2023)
Ezio T Fok, Simone J C F M Moorlag, Yutaka Negishi, Laszlo A Groh, Jéssica Cristina Dos Santos, Cathrin Gräwe, Valerie Villacorta Monge, Daphne D D Craenmehr, Mellanie van Roosmalen, David Pablo da Cunha Jolvino, Letícia Busato Migliorini, Ary Serpa Neto, Patricia Severino, Michiel Vermeulen, Leo A B Joosten, Mihai M Netea, Stephanie Fanucchi, Musa M Mhlanga
A chromatin-regulated biphasic circuit coordinates IL-1β-mediated inflammation. Nature genetics (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research 51 (3) (2023)
Hannah K Neikes, Katarzyna W Kliza, Cathrin Gräwe, Roelof A Wester, Pascal W T C Jansen, Lieke A Lamers, Marijke P Baltissen, Simon J van Heeringen, Colin Logie, Sarah A Teichmann, Rik G H Lindeboom, Michiel Vermeulen
Quantification of absolute transcription factor binding affinities in the native chromatin context using BANC-seq. Nature biotechnology (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research 51 (3) (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research (2023)
Bob J Ignacio, Jelmer Dijkstra, Natalia Mora, Erik F J Slot, Margot J van Weijsten, Erik Storkebaum, Michiel Vermeulen, Kimberly M Bonger
THRONCAT: metabolic labeling of newly synthesized proteins using a bioorthogonal threonine analog. Nature communications 14 (1) (2023)
Juan Manuel Valverde, Geronimo Dubra, Michael Phillips, Austin Haider, Carlos Elena-Real, Aurélie Fournet, Emile Alghoul, Dhanvantri Chahar, Nuria Andrés-Sanchez, Matteo Paloni, Pau Bernadó, Guido van Mierlo, Michiel Vermeulen, Henk W P van den Toorn, Albert J R Heck, Angelos Constantinou, Alessandro Barducci, Kingshuk Ghosh, Nathalie Sibille, Puck Knipscheer, Liliana Krasinska, Daniel Fisher, A F Maarten Altelaar
A cyclin-dependent kinase-mediated phosphorylation switch of disordered protein condensation. Nature communications 14 (1) (2023)
Cathrin Gräwe, Miguel Hernandez-Quiles, Pascal W T C Jansen, Annika Brimmers, Michiel Vermeulen
Determining DNA-Protein Binding Affinities and Specificities from Crude Lysates Using a Combined SILAC/TMT Labeling Strategy. Journal of proteome research (2023)
Alex Pines, Diana Llerena Schiffmacher, Shun-Hsiao Lee, Katarzyna Kliza, Arjan F Theil, Masaki Akita, Angela Helfricht, Karel Bezstarosti, Camila Gonzalo-Hansen, Haico van Attikum, Matty Verlaan-de Vries, Alfred Vertegaal, Jan H J Hoeijmakers, Jurgen A Marteijn, Hannes Lans, Jeroen A A Demmers, Michiel Vermeulen, Titia K Sixma, Tomoo Ogi, Wim Vermeulen
DDA1, a novel factor in transcription-coupled repair, modulates CRL4CSA dynamics at DNA damage-stalled RNA polymerase II. Research square (2023)
Maria V Luna Velez, Hannah K Neikes, Rebecca R Snabel, Yarah Quint, Chen Qian, Aniek Martens, Gert Jan C Veenstra, Michael R Freeman, Simon J van Heeringen, Michiel Vermeulen
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study. Nucleic acids research 51 (3) (2023)
Rui Santalla Méndez, Andrea Rodgers Furones, René Classens, Kristina Fedorova, Manon Haverdil, Marta Canela Capdevila, Anne van Duffelen, Cornelia G Spruijt, Michiel Vermeulen, Martin Ter Beest, Annemiek B van Spriel, Laia Querol Cano
Galectin-9 interacts with Vamp-3 to regulate cytokine secretion in dendritic cells. Cellular and molecular life sciences : CMLS 80 (10) (2023)
Dick W Zijlmans, Irene Talon, Sigrid Verhelst, Adam Bendall, Karlien Van Nerum, Alok Javali, Andrew A Malcolm, Sam S F A van Knippenberg, Laura Biggins, San Kit To, Adrian Janiszewski, Danielle Admiraal, Ruth Knops, Nikky Corthout, Bradley P Balaton, Grigorios Georgolopoulos, Amitesh Panda, Natarajan V Bhanu, Amanda J Collier, Charlene Fabian, Ryan N Allsop, Joel Chappell, Thi Xuan Ai Pham, Michael Oberhuemer, Cankat Ertekin, Lotte Vanheer, Paraskevi Athanasouli, Frederic Lluis, Dieter Deforce, Joop H Jansen, Benjamin A Garcia, Michiel Vermeulen, Nicolas C Rivron, Maarten Dhaenens, Hendrik Marks, Peter J Rugg-Gunn, Vincent Pasque
Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction. Nature cell biology 24 (6) (2022)
Maria Stahl Madsen, Marjoleine F Broekema, Martin Rønn Madsen, Arjen Koppen, Anouska Borgman, Cathrin Gräwe, Elisabeth G K Thomsen, Denise Westland, Mariette E G Kranendonk, Marian Groot Koerkamp, Nicole Hamers, Alexandre M J J Bonvin, Jose M Ramos Pittol, Kedar Nath Natrajan, Sander Kersten, Frank C P Holstege, Houshang Monajemi, Saskia W C van Mil, Michiel Vermeulen, Birthe B Kragelund, David Cassiman, Susanne Mandrup, Eric Kalkhoven
PPARγ lipodystrophy mutants reveal intermolecular interactions required for enhancer activation. Nature communications 13 (1) (2022)
Lotte E Tholen, Heidi Schigt, Sanne G E Kleuskens, Caro Bos, Cornelia G Spruijt, Brigith Willemsen, Michiel Vermeulen, Joost G J Hoenderop, Jeroen H F de Baaij
HNF1β-associated cyst development and electrolyte disturbances are not explained by BAIAP2L2 expression. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 37 (1) (2022)
Lotte E Tholen, Heidi Schigt, Sanne G E Kleuskens, Caro Bos, Cornelia G Spruijt, Brigith Willemsen, Michiel Vermeulen, Joost G J Hoenderop, Jeroen H F de Baaij
HNF1β-associated cyst development and electrolyte disturbances are not explained by BAIAP2L2 expression. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 37 (1) (2022)
Jelmer J Dijkstra, Hannah K Neikes, Somayeh Rezaeifard, Xuhui Ma, Emile E Voest, Daniele V F Tauriello, Michiel Vermeulen
Multiomics of Colorectal Cancer Organoids Reveals Putative Mediators of Cancer Progression Resulting from SMAD4 Inactivation. Journal of proteome research (2022)
Lotte E Tholen, Heidi Schigt, Sanne G E Kleuskens, Caro Bos, Cornelia G Spruijt, Brigith Willemsen, Michiel Vermeulen, Joost G J Hoenderop, Jeroen H F de Baaij
HNF1β-associated cyst development and electrolyte disturbances are not explained by BAIAP2L2 expression. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 37 (1) (2022)
Guus H van Muijlwijk, Guido van Mierlo, Pascal W T C Jansen, Michiel Vermeulen, Nancy M C Bleumink-Pluym, Noah W Palm, Jos P M van Putten, Marcel R de Zoete
Identification of Allobaculum mucolyticum as a novel human intestinal mucin degrader. Gut microbes 13 (1) (2022)
Irene Santos-Barriopedro, Guido van Mierlo, Michiel Vermeulen
Off-the-shelf proximity biotinylation using ProtA-TurboID. Nature protocols (2022)
Valentina Lukinović, Simone Hausmann, Gaël S Roth, Clement Oyeniran, Tanveer Ahmad, Ning Tsao, Joshua R Brickner, Alexandre G Casanova, Florent Chuffart, Ana Morales Benitez, Jessica Vayr, Rebecca Rodell, Marianne Tardif, Pascal W T C Jansen, Yohann Cout, Michiel Vermeulen, Pierre Hainaut, Pawel K Mazur, Nima Mosammaparast, Nicolas Reynoird
SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation-Phosphorylation Cross-talk. Cancer discovery 12 (9) (2022)
Diana van den Heuvel, Cornelia G Spruijt, Román González-Prieto, Angela Kragten, Michelle T Paulsen, Di Zhou, Haoyu Wu, Katja Apelt, Yana van der Weegen, Kevin Yang, Madelon Dijk, Lucia Daxinger, Jurgen A Marteijn, Alfred C O Vertegaal, Mats Ljungman, Michiel Vermeulen, Martijn S Luijsterburg
A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair. Nature communications 12 (1) (2021)
Bas de Wolf, Ali Oghabian, Maureen V Akinyi, Sandra Hanks, Eelco C Tromer, Jolien J E van Hooff, Lisa van Voorthuijsen, Laura E van Rooijen, Jens Verbeeren, Esther C H Uijttewaal, Marijke P A Baltissen, Shawn Yost, Philippe Piloquet, Michiel Vermeulen, Berend Snel, Bertrand Isidor, Nazneen Rahman, Mikko J Frilander, Geert J P L Kops
Chromosomal instability by mutations in the novel minor spliceosome component CENATAC. The EMBO journal 40 (14) (2021)
Lotte E Tholen, Caro Bos, Pascal W T C Jansen, Hanka Venselaar, Michiel Vermeulen, Joost G J Hoenderop, Jeroen H F de Baaij
Bifunctional protein PCBD2 operates as a co-factor for hepatocyte nuclear factor 1β and modulates gene transcription. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 35 (4) (2021)
Irene Santos-Barriopedro, Guido van Mierlo, Michiel Vermeulen
Off-the-shelf proximity biotinylation for interaction proteomics. Nature communications 12 (1) (2021)
Ralph S Grand, Lukas Burger, Cathrin Gräwe, Alicia K Michael, Luke Isbel, Daniel Hess, Leslie Hoerner, Vytautas Iesmantavicius, Sevi Durdu, Marco Pregnolato, Arnaud R Krebs, Sébastien A Smallwood, Nicolas H Thomä, Michiel Vermeulen, Dirk Schübeler
BANP opens chromatin and activates CpG-island-regulated genes. Nature 596 (7870) (2021)
Lina Worpenberg, Chiara Paolantoni, Sara Longhi, Miriam M Mulorz, Tina Lence, Hans-Hermann Wessels, Erik Dassi, Giuseppe Aiello, F X Reymond Sutandy, Marion Scheibe, Raghu R Edupuganti, Anke Busch, Martin M Möckel, Michiel Vermeulen, Falk Butter, Julian König, Michela Notarangelo, Uwe Ohler, Christoph Dieterich, Alessandro Quattrone, Alessia Soldano, Jean-Yves Roignant
Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila. The EMBO journal 40 (4) (2021)
Mathilde Gauchier, Guido van Mierlo, Michiel Vermeulen, Jérôme Déjardin
Purification and enrichment of specific chromatin loci. Nature methods 17 (4) (2020)
Jiyeon Choi, Tongwu Zhang, Andrew Vu, Julien Ablain, Matthew M Makowski, Leandro M Colli, Mai Xu, Rebecca C Hennessey, Jinhu Yin, Harriet Rothschild, Cathrin Gräwe, Michael A Kovacs, Karen M Funderburk, Myriam Brossard, John C Taylor, Bogdan Pasaniuc, Raj Chari, Stephen J Chanock, Clive J Hoggart, Florence Demenais, Jennifer H Barrett, Matthew H Law, Mark M Iles, Kai Yu, Michiel Vermeulen, Leonard I Zon, Kevin K Brown
Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma. Nature communications 11 (1) (2020)
Maureen Spit, Nicola Fenderico, Ingrid Jordens, Tomasz W Radaszkiewicz, Rik G H Lindeboom, Jeroen M Bugter, Alba Cristobal, Lars Ootes, Max van Osch, Eline Janssen, Kim E Boonekamp, Katerina Hanakova, David Potesil, Zbynek Zdrahal, Sylvia F Boj, Jan Paul Medema, Vitezslav Bryja, Bon-Kyoung Koo, Michiel Vermeulen, Madelon M Maurice
RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. The EMBO journal 39 (18) (2020)
Michiel Vermeulen, Jérôme Déjardin
Locus-specific chromatin isolation. Nature reviews. Molecular cell biology 21 (5) (2020)
Joris H Janssen, Ludo Pagie, Vincent D FitzPatrick, Marcel de Haas, Marijke P Baltissen, Federico Comoglio, Robin H van der Weide, Hans Teunissen, Urmo Võsa, Lude Franke, Elzo de Wit, Michiel Vermeulen, Harmen J Bussemaker, Bas van Steensel
High-throughput identification of human SNPs affecting regulatory element activity. Nature genetics 51 (7) (2019)
Guoqiang Yi, Amit Mandoli, Laura Jussen, Esther Tijchon, Maaike G J M van Bergen, Gaëlle Cordonnier, Marten Hansen, Bowon Kim, Luan N Nguyen, Pascal W T C Jansen, Michiel Vermeulen, Bert van der Reijden, Emile van den Akker, Jonathan Bond, Joost H A Martens
CBFβ-MYH11 interferes with megakaryocyte differentiation via modulating a gene program that includes GATA2 and KLF1. Blood cancer journal 9 (3) (2019)
Cristina Furlan, René A M Dirks, Peter C Thomas, Robert C Jones, Jing Wang, Mark Lynch, Hendrik Marks, Michiel Vermeulen
Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements. Nature communications 10 (1) (2019)
Valentina V Ignatova, Pascal W T C Jansen, Marijke P Baltissen, Michiel Vermeulen, Robert Schneider
The interactome of a family of potential methyltransferases in HeLa cells. Scientific reports 9 (1) (2019)
Thomas Burgold, Michael Barber, Susan Kloet, Julie Cramard, Sarah Gharbi, Robin Floyd, Masaki Kinoshita, Meryem Ralser, Michiel Vermeulen, Nicola Reynolds, Sabine Dietmann, Brian Hendrich
The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment. The EMBO journal 38 (12) (2019)
Rik G H Lindeboom, Michiel Vermeulen, Ben Lehner, Fran Supek
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy. Nature genetics 51 (11) (2019)
William H Palmer, Joep Joosten, Gijs J Overheul, Pascal W T C Jansen, Michiel Vermeulen, Darren J Obbard, Ronald P Van Rij
Induction and Suppression of NF-κB Signalling by a DNA Virus of Drosophila. Journal of virology 93 (3) (2019)
Matthew M Makowski, Cathrin Gräwe, Benjamin M Foster, Nhuong V Nguyen, Till Bartke, Michiel Vermeulen
Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry. Nature communications 9 (1) (2018)
Alex Pines, Madelon Dijk, Matthew Makowski, Elisabeth M Meulenbroek, Mischa G Vrouwe, Yana van der Weegen, Marijke Baltissen, Pim J French, Martin E van Royen, Martijn S Luijsterburg, Leon H Mullenders, Michiel Vermeulen, Wim Vermeulen, Navraj S Pannu, Haico van Attikum
TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A. Nature communications 9 (1) (2018)
Ino D Karemaker, Michiel Vermeulen
ZBTB2 reads unmethylated CpG island promoters and regulates embryonic stem cell differentiation. EMBO reports 19 (4) (2018)
Rik Gh Lindeboom, Lisa van Voorthuijsen, Koen C Oost, Maria J Rodríguez-Colman, Maria V Luna-Velez, Cristina Furlan, Floriane Baraille, Pascal Wtc Jansen, Agnès Ribeiro, Boudewijn Mt Burgering, Hugo J Snippert, Michiel Vermeulen
Integrative multi-omics analysis of intestinal organoid differentiation. Molecular systems biology 14 (6) (2018)
Susan L Kloet, Ino D Karemaker, Lisa van Voorthuijsen, Rik G H Lindeboom, Marijke P Baltissen, Raghu R Edupuganti, Deepani W Poramba-Liyanage, Pascal W T C Jansen, Michiel Vermeulen
NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells. Nature communications 9 (1) (2018)
Xiaofei Zhang, Arne H Smits, Gabrielle Ba van Tilburg, Huib Ovaa, Wolfgang Huber, Michiel Vermeulen
Proteome-wide identification of ubiquitin interactions using UbIA-MS. Nature protocols 13 (3) (2018)
Adam F Kebede, Anna Nieborak, Lara Zorro Shahidian, Stephanie Le Gras, Florian Richter, Diana Aguilar Gómez, Marijke P Baltissen, Gergo Meszaros, Helena de Fatima Magliarelli, Aaron Taudt, Raphael Margueron, Maria Colomé-Tatché, Romeo Ricci, Sylvain Daujat, Michiel Vermeulen, Gerhard Mittler, Robert Schneider
Histone propionylation is a mark of active chromatin. Nature structural & molecular biology 24 (12) (2017)
Jiyeon Choi, Mai Xu, Matthew M Makowski, Tongwu Zhang, Matthew H Law, Michael A Kovacs, Anton Granzhan, Wendy J Kim, Hemang Parikh, Michael Gartside, Jeffrey M Trent, Marie-Paule Teulade-Fichou, Mark M Iles, Julia A Newton-Bishop, D Timothy Timothy Bishop, Stuart Macgregor, Nicholas K Hayward, Michiel Vermeulen, Kevin K Brown
A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF. Nature genetics 49 (9) (2017)
Raghu R Edupuganti, Simon Geiger, Rik G H Lindeboom, Hailing Shi, Phillip J Hsu, Zhike Lu, Shuang-Yin Wang, Marijke P A Baltissen, Pascal W T C Jansen, Martin Rossa, Markus Müller, Hendrik G Stunnenberg, Chuan He, Thomas Carell, Michiel Vermeulen
N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis. Nature structural & molecular biology 24 (10) (2017)

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Michiel Vermeulen