Takashi Ishida

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 10

Top Venues

Bioengineering (Basel, Switzerland)

Journal of chemical information and modeling

ACS omega

BMC bioinformatics

Tokyo Insititute of Technology

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Tokyo Insititute of Technology Oct 01 2014

Japan

Associate professor :: Department of Computer Science

Tokyo Institute of Technology Apr 01 2012 - Sep 30 2014

Japan

Assistant professor :: Department of Computer Science

Tokyo Institute of Technology Oct 01 2009 - Mar 31 2012

Japan

Project assistant professor :: Department of Computer Science

The University of Tokyo Apr 01 2006 - Sep 30 2009

Japan

Researcher :: Institute of Medical Science

Publications

Jason Kurniawan, Takashi Ishida
Comparing Supervised Learning and Rigorous Approach for Predicting Protein Stability upon Point Mutations in Difficult Targets. Journal of chemical information and modeling (2023)
Ryunosuke Yoshino, Nobuaki Yasuo, Yohsuke Hagiwara, Takashi Ishida, Daniel Ken Inaoka, Yasushi Amano, Yukihiro Tateishi, Kazuki Ohno, Ichiji Namatame, Tatsuya Niimi, Masaya Orita, Kiyoshi Kita, Yutaka Akiyama, Masakazu Sekijima
Discovery of a Hidden Trypanosoma cruzi Spermidine Synthase Binding Site and Inhibitors through In Silico, In Vitro , and X-ray Crystallography. ACS omega 8 (29) (2023)
Yuma Takei, Takashi Ishida
A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models. Bioengineering (Basel, Switzerland) 9 (3) (2022)
Jason Kurniawan, Takashi Ishida
Protein Model Quality Estimation Using Molecular Dynamics Simulation. ACS omega 7 (28) (2022)
Haris Hasic, Takashi Ishida
Single-Step Retrosynthesis Prediction Based on the Identification of Potential Disconnection Sites Using Molecular Substructure Fingerprints. Journal of chemical information and modeling 61 (2) (2021)
Yuma Takei, Takashi Ishida
P3CMQA: Single-Model Quality Assessment Using 3DCNN with Profile-Based Features. Bioengineering (Basel, Switzerland) 8 (3) (2021)
Toshitaka Tanebe, Takashi Ishida
End-to-end learning for compound activity prediction based on binding pocket information. BMC bioinformatics 22 (Suppl 3) (2021)
Kazuki Izawa, Kazuko Okamoto-Shibayama, Daichi Kita, Sachiyo Tomita, Atsushi Saito, Takashi Ishida, Masahito Ohue, Yutaka Akiyama, Kazuyuki Ishihara
Taxonomic and Gene Category Analyses of Subgingival Plaques from a Group of Japanese Individuals with and without Periodontitis. International journal of molecular sciences 22 (10) (2021)
Rin Sato, Takashi Ishida
Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network. PloS one 14 (9) (2019)
Shuntaro Chiba, Masahito Ohue, Anastasiia Gryniukova, Petro Borysko, Sergey Zozulya, Nobuaki Yasuo, Ryunosuke Yoshino, Kazuyoshi Ikeda, Woong-Hee Shin, Daisuke Kihara, Mitsuo Iwadate, Hideaki Umeyama, Takaaki Ichikawa, Reiji Teramoto, Kun-Yi Hsin, Vipul Gupta, Hiroaki Kitano, Mika Sakamoto, Akiko Higuchi, Nobuaki Miura, Kei Yura, Masahiro Mochizuki, Chandrasekaran Ramakrishnan, A Mary Thangakani, D Velmurugan, M Michael Gromiha, Itsuo Nakane, Nanako Uchida, Hayase Hakariya, Modong Tan, Hironori K Nakamura, Shogo D Suzuki, Tomoki Ito, Masahiro Kawatani, Kentaroh Kudoh, Sakurako Takashina, Kazuki Z Yamamoto, Yoshitaka Moriwaki, Keita Oda, Daisuke Kobayashi, Tatsuya Okuno, Shintaro Minami, George Chikenji, Philip Prathipati, Chioko Nagao, Attayeb Mohsen, Mari Ito, Kenji Mizuguchi, Teruki Honma, Takashi Ishida, Takatsugu Hirokawa, Yutaka Akiyama, Masakazu Sekijima
A prospective compound screening contest identified broader inhibitors for Sirtuin 1. Scientific reports 9 (1) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Takashi Ishida