Thomas Girke

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 9

Top Venues

NAR genomics and bioinformatics

Antioxidants (Basel, Switzerland)

BMC bioinformatics

Science advances

University of California, Riverside

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California, Riverside

United States

Professor of Bioinformatics :: Institute for Integrative Genome Biology

Publications

Jianhai Zhang, Le Zhang, Brendan Gongol, Jordan Hayes, Alexander T Borowsky, Julia Bailey-Serres, Thomas Girke
spatialHeatmap: visualizing spatial bulk and single-cell assays in anatomical images. NAR genomics and bioinformatics 6 (1) (2024)
Jianhai Zhang, Le Zhang, Brendan Gongol, Jordan Hayes, Alexander T Borowsky, Julia Bailey-Serres, Thomas Girke
spatialHeatmap: visualizing spatial bulk and single-cell assays in anatomical images. NAR genomics and bioinformatics 6 (1) (2024)
Jane H Kim, Julianna Dong, Brandon H Le, Zachery R Lonergan, Weifeng Gu, Thomas Girke, Wei Zhang, Dianne K Newman, Manuela M Martins-Green
Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity. Antioxidants (Basel, Switzerland) 13 (6) (2024)
Jane H Kim, Julianna Dong, Brandon H Le, Zachery R Lonergan, Weifeng Gu, Thomas Girke, Wei Zhang, Dianne K Newman, Manuela M Martins-Green
Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity. Antioxidants (Basel, Switzerland) 13 (6) (2024)
Jianhai Zhang, Le Zhang, Brendan Gongol, Jordan Hayes, Alexander T Borowsky, Julia Bailey-Serres, Thomas Girke
spatialHeatmap: visualizing spatial bulk and single-cell assays in anatomical images. NAR genomics and bioinformatics 6 (1) (2024)
Giovanna L Pozuelos, Meenakshi S Kagda, Matine A Rubin, Maciej Lukasz Goniewicz, Thomas Girke, Prue Talbot
Transcriptomic Evidence That Switching from Tobacco to Electronic Cigarettes Does Not Reverse Damage to the Respiratory Epithelium. Toxics 10 (7) (2022)
David B Lombard, William J Kohler, Angela H Guo, Christi M Gendron, Melissa Han, Weiqiao Ding, Yang Lyu, Tsui-Ting Ching, Feng-Yung Wang, Tuhin S Chakraborty, Zaneta Nikolovska-Coleska, Yuzhu Duan, Thomas Girke, Ao-Lin Hsu, Scott D Pletcher, Richard A Miller
High-throughput small molecule screening reveals Nrf2-dependent and -independent pathways of cellular stress resistance. Science advances 6 (40) (2020)
Tyler William H Backman, Daniel S Evans, Thomas Girke
Large-scale bioactivity analysis of the small-molecule assayed proteome. PloS one 12 (2) (2017)
Tyler W H Backman, Thomas Girke
systemPipeR: NGS workflow and report generation environment. BMC bioinformatics 17 (2016)
Tasha Barr, Thomas Girke, Suhas Sureshchandra, Christina Nguyen, Kathleen A Grant, Ilhem Messaoudi
Alcohol Consumption Modulates Host Defense in Rhesus Macaques by Altering Gene Expression in Circulating Leukocytes. Journal of immunology (Baltimore, Md. : 1950) 196 (1) (2015)

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Publication Activity (10 Years)

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Thomas Girke