Meenakshi S Kagda (Meenakshi Kagda)

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 8

Top Topics

Top Venues

Nature genetics

bioRxiv : the preprint server for biology

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Shengcheng Dong, Nanxiang Zhao, Emma Spragins, Meenakshi S Kagda, Mingjie Li, Pedro Assis, Otto Jolanki, Yunhai Luo, J Michael Cherry, Alan P Boyle, Benjamin C Hitz
Annotating and prioritizing human non-coding variants with RegulomeDB v.2. Nature genetics 55 (5) (2023)
Shengcheng Dong, Nanxiang Zhao, Emma Spragins, Meenakshi S Kagda, Mingjie Li, Pedro Assis, Otto Jolanki, Yunhai Luo, J Michael Cherry, Alan P Boyle, Benjamin C Hitz
Annotating and prioritizing human non-coding variants with RegulomeDB v.2. Nature genetics 55 (5) (2023)
Fairlie Reese, Brian A Williams, Gabriela Balderrama-Gutierrez, Dana Wyman, Muhammed Hasan Çelik, Elisabeth Rebboah, Narges Rezaie, Diane Trout, Milad Razavi-Mohseni, Yunzhe Jiang, Beatrice Borsari, Samuel J Morabito, Heidi Yahan Liang, Cassandra J McGill, Sorena Rahmanian, Jasmine Sakr, Shan Jiang, Weihua Zeng, Klebea Carvalho, Annika K Weimer, Louise A Dionne, Ariel McShane, Karan Bedi, Shaimae I Elhajjajy, Sean Upchurch, Jennifer Jou, Ingrid Youngworth, Aditi K Narayanan, Paul Sud, Otto Jolanki, Benjamin C Hitz, Meenakshi S Kagda, Michael Paul Snyder, Benjamin C Hitz, Jill E Moore, Nishigandha Phalke, David A Bennett, Laura G Reinholdt, Mats Ljungman, Michael A Beer, Mark B Gerstein, Lior Pachter, Roderic Guigo, Barbara J Wold, Ali Mortazavi
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity. bioRxiv : the preprint server for biology (2023)
Benjamin Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J Seth Strattan, Cricket Sloan, Timothy Dreszer, Laurence Rowe, Nikhil Podduturi, Venkat Malladi, Esther T Chan, Jean Davidson, Marcus Ho, Stuart Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Wahling, Khine Zin Lin, Jennifer Jou, Eurie Hong, Laurence D Rowe, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C Durand, Olga Dudchenko, David Weisz, Suhas Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan Bochkov, Muhammad Saad Shamim, Ragini Mahajan, Erez Aiden, Thomas Gingeras, Simon Heath, Martin Hirst, W James Kent, Anshul Kundaje, Ali Mortazavi, Barbara J Wold, J Michael Cherry
The ENCODE Uniform Analysis Pipelines. Research square (2023)
Benjamin C Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S Kagda, Keenan Graham, Paul Sud, Aditi K Narayanan, Benjamin C Hitz, Cricket A Sloan, Timothy Dreszer, Laurence D Rowe, Nikhil R Podduturi, Venkat S Malladi, Esther T Chan, Jean M Davidson, Brian T Lee, Stuart Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Whaling, Eurie L Hong, Laurence D Rowe, Richard S Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C Durand, Olga Dudchenko, David Weisz, Suhas S P Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan Bochkov, Muhammad Saad Shamim, Ragini Mahajan, Erez Lieberman Aiden, Thomas R Gingeras, Simon Charles Heath, Martin Hirst, W James Kent, Anshul Kundaje, Ali Mortazavi, Barbara J Wold, J Michael Cherry
The ENCODE Uniform Analysis Pipelines. bioRxiv : the preprint server for biology (2023)
Giovanna L Pozuelos, Meenakshi S Kagda, Matine A Rubin, Maciej Lukasz Goniewicz, Thomas Girke, Prue Talbot
Transcriptomic Evidence That Switching from Tobacco to Electronic Cigarettes Does Not Reverse Damage to the Respiratory Epithelium. Toxics 10 (7) (2022)
Christopher E Ellison, Meenakshi S Kagda, Weihuan Cao
Telomeric TART elements target the piRNA machinery in Drosophila. PLoS biology 18 (12) (2020)
Audrey M V Ah-Fong, Meenakshi S Kagda, Melania Abrahamian, Howard S Judelson
Niche-specific metabolic adaptation in biotrophic and necrotrophic oomycetes is manifested in differential use of nutrients, variation in gene content, and enzyme evolution. PLoS pathogens 15 (4) (2019)