Thomas Sauter

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 35

Top Topics

Gene Expression

Top Venues

International journal of molecular sciences

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Maria Pires Pacheco, Deborah Gerard, Riley J Mangan, Alec R Chapman, Dennis Hecker, Manolis Kellis, Marcel H Schulz, Lasse Sinkkonen, Thomas Sauter
Epigenetic control of metabolic identity across cell types. bioRxiv : the preprint server for biology (2024)
Carolin Ector, Christoph Schmal, Jeff Didier, Sébastien De Landtsheer, Anna-Marie Finger, Francesca Müller-Marquardt, Johannes Hubertus Schulte, Thomas Sauter, Ulrich Keilholz, Hanspeter Herzel, Achim Kramer, Adrián E Granada
Time-of-day effects of cancer drugs revealed by high-throughput deep phenotyping. Nature communications 15 (1) (2024)
Carolin Ector, Christoph Schmal, Jeff Didier, Sébastien De Landtsheer, Anna-Marie Finger, Francesca Müller-Marquardt, Johannes Hubertus Schulte, Thomas Sauter, Ulrich Keilholz, Hanspeter Herzel, Achim Kramer, Adrián E Granada
Time-of-day effects of cancer drugs revealed by high-throughput deep phenotyping. Nature communications 15 (1) (2024)
Luca Di Leo, Chiara Pagliuca, Ali Kishk, Salvatore Rizza, Christina Tsiavou, Chiara Pecorari, Christina Dahl, Maria Pires Pacheco, Rikke Tholstrup, Jonathan Richard Brewer, Pietro Berico, Eva Hernando, Francesco Cecconi, Robert Ballotti, Corine Bertolotto, Giuseppe Filomeni, Morten Frier Gjerstorff, Thomas Sauter, Penny Lovat, Per Guldberg, Daniela De Zio
AMBRA1 levels predict resistance to MAPK inhibitors in melanoma. Proceedings of the National Academy of Sciences of the United States of America 121 (25) (2024)
Luca Di Leo, Chiara Pagliuca, Ali Kishk, Salvatore Rizza, Christina Tsiavou, Chiara Pecorari, Christina Dahl, Maria Pires Pacheco, Rikke Tholstrup, Jonathan Richard Brewer, Pietro Berico, Eva Hernando, Francesco Cecconi, Robert Ballotti, Corine Bertolotto, Giuseppe Filomeni, Morten Frier Gjerstorff, Thomas Sauter, Penny Lovat, Per Guldberg, Daniela De Zio
AMBRA1 levels predict resistance to MAPK inhibitors in melanoma. Proceedings of the National Academy of Sciences of the United States of America 121 (25) (2024)
Carolin Ector, Christoph Schmal, Jeff Didier, Sébastien De Landtsheer, Anna-Marie Finger, Francesca Müller-Marquardt, Johannes Hubertus Schulte, Thomas Sauter, Ulrich Keilholz, Hanspeter Herzel, Achim Kramer, Adrián E Granada
Time-of-day effects of cancer drugs revealed by high-throughput deep phenotyping. Nature communications 15 (1) (2024)
Maria Pires Pacheco, Deborah Gerard, Riley J Mangan, Alec R Chapman, Dennis Hecker, Manolis Kellis, Marcel H Schulz, Lasse Sinkkonen, Thomas Sauter
Epigenetic control of metabolic identity across cell types. bioRxiv : the preprint server for biology (2024)
Luca Di Leo, Chiara Pagliuca, Ali Kishk, Salvatore Rizza, Christina Tsiavou, Chiara Pecorari, Christina Dahl, Maria Pires Pacheco, Rikke Tholstrup, Jonathan Richard Brewer, Pietro Berico, Eva Hernando, Francesco Cecconi, Robert Ballotti, Corine Bertolotto, Giuseppe Filomeni, Morten Frier Gjerstorff, Thomas Sauter, Penny Lovat, Per Guldberg, Daniela De Zio
AMBRA1 levels predict resistance to MAPK inhibitors in melanoma. Proceedings of the National Academy of Sciences of the United States of America 121 (25) (2024)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Apurva Badkas, Sébastien De Landtsheer, Thomas Sauter
Expanding the Disease Network of Glioblastoma Multiforme via Topological Analysis. International journal of molecular sciences 24 (4) (2023)
Tamara Bintener, Maria Pires Pacheco, Demetra Philippidou, Christiane Margue, Ali Kishk, Greta Del Mistro, Luca Di Leo, Maria Moscardó Garcia, Rashi Halder, Lasse Sinkkonen, Daniela De Zio, Stephanie Kreis, Dagmar Kulms, Thomas Sauter
Metabolic modelling-based in silico drug target prediction identifies six novel repurposable drugs for melanoma. Cell death & disease 14 (7) (2023)
Apurva Badkas, Sébastien De Landtsheer, Thomas Sauter
Expanding the Disease Network of Glioblastoma Multiforme via Topological Analysis. International journal of molecular sciences 24 (4) (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Apurva Badkas, Sébastien De Landtsheer, Thomas Sauter
Expanding the Disease Network of Glioblastoma Multiforme via Topological Analysis. International journal of molecular sciences 24 (4) (2023)
Dominik Ternes, Mina Tsenkova, Vitaly Igorevich Pozdeev, Marianne Meyers, Eric Koncina, Sura Atatri, Martine Schmitz, Jessica Karta, Maryse Schmoetten, Almut Heinken, Fabien Rodriguez, Catherine Delbrouck, Anthoula Gaigneaux, Aurélien Ginolhac, Tam Thuy Dan Nguyen, Lea Grandmougin, Audrey Frachet-Bour, Camille Martin-Gallausiaux, Maria Pires Pacheco, Lorie Neuberger-Castillo, Paulo Miranda, Nikolaus Zuegel, Jean-Yves Ferrand, Manon Gantenbein, Thomas Sauter, Daniel Joseph Slade, Ines Thiele, Johannes Meiser, Serge Haan, Paul Wilmes, Elisabeth Letellier
Author Correction: The gut microbial metabolite formate exacerbates colorectal cancer progression. Nature metabolism (2023)
Marios Gavriil, Marco Proietto, Nicole Paczia, Aurélien Ginolhac, Rashi Halder, Elena Valceschini, Thomas Sauter, Carole L Linster, Lasse Sinkkonen
2-Hydroxyglutarate modulates histone methylation at specific loci and alters gene expression via Rph1 inhibition. Life science alliance 7 (2) (2023)
Apurva Badkas, Sébastien De Landtsheer, Thomas Sauter
Expanding the Disease Network of Glioblastoma Multiforme via Topological Analysis. International journal of molecular sciences 24 (4) (2023)
Apurva Badkas, Sébastien De Landtsheer, Thomas Sauter
Expanding the Disease Network of Glioblastoma Multiforme via Topological Analysis. International journal of molecular sciences 24 (4) (2023)
Maria Pires Pacheco, Jimmy Ji, Tessy Prohaska, María Moscardó García, Thomas Sauter
scFASTCORMICS: A Contextualization Algorithm to Reconstruct Metabolic Multi-Cell Population Models from Single-Cell RNAseq Data. Metabolites 12 (12) (2022)
Maria Pires Pacheco, Jimmy Ji, Tessy Prohaska, María Moscardó García, Thomas Sauter
scFASTCORMICS: A Contextualization Algorithm to Reconstruct Metabolic Multi-Cell Population Models from Single-Cell RNAseq Data. Metabolites 12 (12) (2022)
Maria Pires Pacheco, Jimmy Ji, Tessy Prohaska, María Moscardó García, Thomas Sauter
scFASTCORMICS: A Contextualization Algorithm to Reconstruct Metabolic Multi-Cell Population Models from Single-Cell RNAseq Data. Metabolites 12 (12) (2022)
Thomas Sauter, Tamara Bintener, Ali Kishk, Luana Presta, Tessy Prohaska, Daniel Guignard, Ni Zeng, Claudia Cipriani, Sundas Arshad, Thomas Pfau, Patricia Martins Conde, Maria Pires Pacheco
Project-based learning course on metabolic network modelling in computational systems biology. PLoS computational biology 18 (1) (2022)
Danupon Nantajit, Luana Presta, Thomas Sauter, Mahvash Tavassoli
EGFR-induced suppression of HPV E6/E7 is mediated by microRNA-9-5p silencing of BRD4 protein in HPV-positive head and neck squamous cell carcinoma. Cell death & disease 13 (11) (2022)
Claudia Cipriani, Maria Pires Pacheco, Ali Kishk, Maryem Wachich, Daniel Kwaku Abankwa, Elisabeth Schaffner-Reckinger, Thomas Sauter
Bruceine D Identified as a Drug Candidate against Breast Cancer by a Novel Drug Selection Pipeline and Cell Viability Assay. Pharmaceuticals (Basel, Switzerland) 15 (2) (2022)
Maria Pires Pacheco, Jimmy Ji, Tessy Prohaska, María Moscardó García, Thomas Sauter
scFASTCORMICS: A Contextualization Algorithm to Reconstruct Metabolic Multi-Cell Population Models from Single-Cell RNAseq Data. Metabolites 12 (12) (2022)
Dominik Ternes, Mina Tsenkova, Vitaly Igorevich Pozdeev, Marianne Meyers, Eric Koncina, Sura Atatri, Martine Schmitz, Jessica Karta, Maryse Schmoetten, Almut Heinken, Fabien Rodriguez, Catherine Delbrouck, Anthoula Gaigneaux, Aurélien Ginolhac, Tam Thuy Dan Nguyen, Lea Grandmougin, Audrey Frachet-Bour, Camille Martin-Gallausiaux, Maria Pires Pacheco, Lorie Neuberger-Castillo, Paulo Miranda, Nikolaus Zuegel, Jean-Yves Ferrand, Manon Gantenbein, Thomas Sauter, Daniel Joseph Slade, Ines Thiele, Johannes Meiser, Serge Haan, Paul Wilmes, Elisabeth Letellier
The gut microbial metabolite formate exacerbates colorectal cancer progression. Nature metabolism 4 (4) (2022)
Marco Albrecht, Yuri Kogan, Dagmar Kulms, Thomas Sauter
Mechanistically Coupled PK (MCPK) Model to Describe Enzyme Induction and Occupancy Dependent DDI of Dabrafenib Metabolism. Pharmaceutics 14 (2) (2022)
Ali Kishk, Maria Pires Pacheco, Tony Heurtaux, Lasse Sinkkonen, Jun Pang, Sabrina Fritah, Simone P Niclou, Thomas Sauter
Review of Current Human Genome-Scale Metabolic Models for Brain Cancer and Neurodegenerative Diseases. Cells 11 (16) (2022)
Thomas Pfau, Mafalda Galhardo, Jake Lin, Thomas Sauter
IDARE2-Simultaneous Visualisation of Multiomics Data in Cytoscape. Metabolites 11 (5) (2021)
Apurva Badkas, Sébastien De Landtsheer, Thomas Sauter
Topological network measures for drug repositioning. Briefings in bioinformatics 22 (4) (2021)
Marco Albrecht, Philippe Lucarelli, Dagmar Kulms, Thomas Sauter
Computational models of melanoma. Theoretical biology & medical modelling 17 (1) (2020)