Marcel H Schulz

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 34

Top Venues

GigaScience

EMBO reports

Bioinformatics (Oxford, England)

Nucleic acids research

Goethe-Universität Frankfurt am Main

Max-Planck-Institut für molekulare Genetik (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Goethe-Universität Frankfurt am Main Apr 01 2019

Germany

Professor for Computational Biology :: Instititute for Cardiovascular Regeneration

Goethe-Universität Frankfurt am Main May 01 2018

Germany

Group leader (Institute for Cardiovascular Regeneration)

Universität des Saarlandes Jun 01 2013

Germany

Independent research group leader :: Excellence Cluster for Multimodal Computing and Interaction

Carnegie Mellon University Sep 01 2010 - May 31 2013

United States

Lane fellow :: Computational Biology Department, School of Computer Science

Education History

Max-Planck-Institut für molekulare Genetik

Germany

PHD :: Computational Molecular Biology

Freie Universität Berlin

Germany

PHD :: Institut für Informatik

Freie Universität Berlin Oct 01 2002 - Oct 01 2005

Germany

BSC :: Institut für Informatik

Publications

Dennis Hecker, Marcel H Schulz
Prediction of Enhancer-Gene Interactions Using Chromatin-Conformation Capture and Epigenome Data Using STARE. Methods in molecular biology (Clifton, N.J.) 2856 (2024)
Maria Pires Pacheco, Deborah Gerard, Riley J Mangan, Alec R Chapman, Dennis Hecker, Manolis Kellis, Marcel H Schulz, Lasse Sinkkonen, Thomas Sauter
Epigenetic control of metabolic identity across cell types. bioRxiv : the preprint server for biology (2024)
Mariano Ruz Jurado, Lukas S Tombor, Mani Arsalan, Tomas Holubec, Fabian Emrich, Thomas Walther, Wesley Tyler Abplanalp, Ariane Fischer, Andreas M Zeiher, Marcel H Schulz, Stefanie Dimmeler, David John
Improved integration of single-cell transcriptome data demonstrates common and unique signatures of heart failure in mice and humans. GigaScience 13 (2024)
Laura Rumpf, Marcel H Schulz
Learning Enhancer-Gene associations from Bulk Transcriptomic and Epigenetic Sequencing Data with STITCHIT. Methods in molecular biology (Clifton, N.J.) 2856 (2024)
Mariano Ruz Jurado, Lukas S Tombor, Mani Arsalan, Tomas Holubec, Fabian Emrich, Thomas Walther, Wesley Tyler Abplanalp, Ariane Fischer, Andreas M Zeiher, Marcel H Schulz, Stefanie Dimmeler, David John
Improved integration of single-cell transcriptome data demonstrates common and unique signatures of heart failure in mice and humans. GigaScience 13 (2024)
Maria Pires Pacheco, Deborah Gerard, Riley J Mangan, Alec R Chapman, Dennis Hecker, Manolis Kellis, Marcel H Schulz, Lasse Sinkkonen, Thomas Sauter
Epigenetic control of metabolic identity across cell types. bioRxiv : the preprint server for biology (2024)
Mariano Ruz Jurado, Lukas S Tombor, Mani Arsalan, Tomas Holubec, Fabian Emrich, Thomas Walther, Wesley Tyler Abplanalp, Ariane Fischer, Andreas M Zeiher, Marcel H Schulz, Stefanie Dimmeler, David John
Improved integration of single-cell transcriptome data demonstrates common and unique signatures of heart failure in mice and humans. GigaScience 13 (2024)
Sabine Steffens, Katrin Schroder, Martina Krüger, Christoph Maack, Katrin Streckfuß-Bömeke, Johannes Backs, Rolf Backofen, Bettina Baeßler, Yvan Devaux, Ralf Gilsbach, Jordi Heijman, Jochen Knaus, Rafael Kramann, Dominik K Linz, Allyson L Lister, Henrike Maatz, Lars Maegdefessel, Manuel Mayr, Benjamin Meder, Sara Yasemin Nussbeck, Eva A Rog-Zielinska, Marcel H Schulz, Albert Sickmann, Gökhan Yigit, Peter Kohl
The challenges of research data management in cardiovascular science: a DGK and DZHK position paper-executive summary. Clinical research in cardiology : official journal of the German Cardiac Society (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Dennis Hecker, Michael Lauber, Fatemeh Behjati Ardakani, Shamim Ashrafiyan, Quirin Manz, Johannes Kersting, Markus Hoffmann, Marcel H Schulz, Markus List
Computational tools for inferring transcription factor activity. Proteomics (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports (2023)
Jan Grau, Florian Schmidt, Marcel H Schulz
Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcription factor binding models. Nucleic acids research (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Dennis Hecker, Fatemeh Behjati Ardakani, Alexander Karollus, Julien Gagneur, Marcel H Schulz
The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data. Bioinformatics (Oxford, England) 39 (2) (2023)
Dennis Hecker, Fatemeh Behjati Ardakani, Alexander Karollus, Julien Gagneur, Marcel H Schulz
The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data. Bioinformatics (Oxford, England) 39 (2) (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports (2023)
Dennis Hecker, Fatemeh Behjati Ardakani, Alexander Karollus, Julien Gagneur, Marcel H Schulz
The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data. Bioinformatics (Oxford, England) 39 (2) (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurélien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, François Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Krüger, Lasse Sinkkonen
Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation. EMBO reports 25 (1) (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Paola Cattaneo, Michael G B Hayes, Nina Baumgarten, Dennis Hecker, Sofia Peruzzo, Galip S Aslan, Paolo Kunderfranco, Veronica Larcher, Lunfeng Zhang, Riccardo Contu, Gregory Fonseca, Simone Spinozzi, Ju Chen, Gianluigi Condorelli, Stefanie Dimmeler, Marcel H Schulz, Sven Heinz, Nuno Guimarães-Camboa, Sylvia M Evans
DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal. Nature communications 13 (1) (2022)
Timothy Warwick, Marcel H Schulz, Ralf Gilsbach, Ralf P Brandes, Sabine Seuter
Nuclear receptor activation shapes spatial genome organization essential for gene expression control: lessons learned from the vitamin D receptor. Nucleic acids research 50 (7) (2022)
Ralf Schulze Brüning, Lukas S Tombor, Marcel H Schulz, Stefanie Dimmeler, David John
Comparative analysis of common alignment tools for single-cell RNA sequencing. GigaScience 11 (2022)
Matthias S Leisegang, Jasleen Kaur Bains, Sandra Seredinski, James A Oo, Nina M Krause, Chao-Chung Kuo, Stefan Günther, Nevcin Sentürk Cetin, Timothy Warwick, Can Cao, Frederike Lam, Judit Izquierdo Ponce, Shaza Haydar, Rebecca Bednarz, Chanil Valasarajan, Dominik Christian Fuhrmann, Jens Preussner, Mario Looso, Soni Savai Pullamsetti, Marcel H Schulz, Hendrik R A Jonker, Christian Richter, Flávia Rezende, Ralf Gilsbach, Beatrice Pflüger-Müller, Ilka Wittig, Ingrid Grummt, Teodora Ribarska, Ivan G Costa, Harald Schwalbe, Ralf P Brandes
HIF1α-AS1 is a DNA:DNA:RNA triplex-forming lncRNA interacting with the HUSH complex. Nature communications 13 (1) (2022)
Peter Ebert, Marcel H Schulz
Fast detection of differential chromatin domains with SCIDDO. Bioinformatics (Oxford, England) 37 (9) (2021)
Beatriz Serrano-Solano, Melanie Christine Föll, Cristóbal Gallardo-Alba, Anika Erxleben, Helena Rasche, Saskia Hiltemann, Matthias Fahrner, Mark J Dunning, Marcel H Schulz, Beáta Scholtz, Dave Clements, Anton Nekrutenko, Bérénice Batut, Björn A Grüning
Fostering accessible online education using Galaxy as an e-learning platform. PLoS computational biology 17 (5) (2021)
Florian Schmidt, Alexander Marx, Nina Baumgarten, Marie Hebel, Martin Wegner, Manuel Kaulich, Matthias S Leisegang, Ralf P Brandes, Jonathan Göke, Jilles Vreeken, Marcel H Schulz
Integrative analysis of epigenetics data identifies gene-specific regulatory elements. Nucleic acids research 49 (18) (2021)
Markus Hoffmann, Elisabeth Pachl, Michael Hartung, Veronika Stiegler, Jan Baumbach, Marcel H Schulz, Markus List
SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions. NAR cancer 3 (1) (2021)
Vanessa Königs, Camila de Oliveira Freitas Machado, Benjamin Arnold, Nicole Blümel, Anfisa Solovyeva, Sinah Löbbert, Michal Schafranek, Ruiz De Los Mozos Igor, Ilka Wittig, Francois McNicoll, Marcel H Schulz, Michaela Müller-McNicoll
SRSF7 maintains its homeostasis through the expression of Split-ORFs and nuclear body assembly. Nature structural & molecular biology 27 (3) (2020)
Florian Schmidt, Fabian Kern, Marcel H Schulz
Integrative prediction of gene expression with chromatin accessibility and conformation data. Epigenetics & chromatin 13 (1) (2020)
Andrea Blum, Saleem Khalifa, Karl J V Nordström, Martin Simon, Marcel H Schulz, Manfred J Schmitt
Transcriptomics of a KDELR1 knockout cell line reveals modulated cell adhesion properties. Scientific reports 9 (1) (2019)
Marcello Pirritano, Ulrike Götz, Sivarajan Karunanithi, Karl Nordström, Marcel H Schulz, Martin Simon
Environmental Temperature Controls Accumulation of Transacting siRNAs Involved in Heterochromatin Formation. Genes 9 (2) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Marcel H Schulz