Paul Wilmes

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 53

Top Venues

Nature communications

International journal of environmental research and public health

Gut microbes

Microbiology spectrum

University of Luxembourg

Glasgow Caledonian University (BSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Luxembourg Feb 01 2015

Luxembourg

Associate Professor :: Luxembourg Centre for Systems Biomedicine

University of Luxembourg Oct 01 2011 - Jan 31 2015

Luxembourg

ATTRACT Research Fellow :: Luxembourg Centre for Systems Biomedicine

Centre de Recherche Public - Gabriel Lippmann Feb 01 2010 - Oct 01 2011

Luxembourg

Project leader; ATTRACT Research Fellow :: Environment and Agro-Biotechnologies

University of California Berkeley May 15 2006 - Dec 18 2009

United States

Postdoctoral research scholar :: Earth and Planetary Science

University of East Anglia Mar 15 2006 - Apr 14 2006

United Kingdom

Research associate :: School of Biological Sciences

Max Planck Institute for Marine Microbiology Oct 01 2005 - Oct 31 2005

Germany

Visiting scientist (DAAD) :: Department of Molecular Ecology

Fraunhofer Institute for Molecular Biology and Applied Ecology Aug 01 2002 - Sep 13 2002

Germany

Research assistant :: Applied Ecology

Scottish Water Oct 01 2001 - May 31 2002

United Kingdom

Honours research student

Centre de Recherche Public - Henri Tudor Jul 01 2001 - Aug 31 2001

Luxembourg

Research assistant :: Resource Centre for Environmental Technologies

Centre de Recherche Public - Henri Tudor / Luxcontrol Jun 15 2000 - Aug 31 2000

Luxembourg

Research assistant :: Resource Centre for Environmental Technologies

DuPont de Nemours Luxembourg S.A. Jul 01 1999 - Aug 31 1999

Luxembourg

Research assistant :: Tyvek Development Department

DuPont Engineering Products S.A. Jan 01 1998 - Jun 30 1998

Luxembourg

Research assistant (stage de préparation en enterprise) :: Tyvek Quality Department

Education History

Glasgow Caledonian University

United Kingdom

BSC :: Department of Physical Sciences

Publications

Velma T E Aho, Matthias Klee, Zied Landoulsi, Anna Heintz-Buschart, Lukas Pavelka, Anja K Leist, Rejko Krüger, Patrick May, Paul Wilmes, null null
Gut microbiome is not associated with mild cognitive impairment in Parkinson's disease. NPJ Parkinson's disease 10 (1) (2024)
Mara Lucchetti, Kehinde Oluwasegun Aina, Léa Grandmougin, Christian Jaeger, Pau Perez-Escriva, Elisabeth Letellier, Alexander S Mosig, Paul Wilmes
An Organ-on-Chip Platform for Simulating Drug Metabolism Along the Gut-Liver Axis. Advanced healthcare materials 13 (20) (2024)
Mara Lucchetti, Gabriel Werr, Sofia Johansson, Laurent Barbe, Léa Grandmougin, Paul Wilmes, Maria Tenje
Integration of multiple flexible electrodes for real-time detection of barrier formation with spatial resolution in a gut-on-chip system. Microsystems & nanoengineering 10 (2024)
Velma T E Aho, Matthias Klee, Zied Landoulsi, Anna Heintz-Buschart, Lukas Pavelka, Anja K Leist, Rejko Krüger, Patrick May, Paul Wilmes, null null
Gut microbiome is not associated with mild cognitive impairment in Parkinson's disease. NPJ Parkinson's disease 10 (1) (2024)
Lara M Paulo, Yu-Chen Liu, Juan Castilla-Archilla, Javier Ramiro-Garcia, Dermot Hughes, Thérèse Mahony, B Conall Holohan, Paul Wilmes, Vincent O'Flaherty
Full-scale study on high-rate low-temperature anaerobic digestion of agro-food wastewater: process performances and microbial community. Water science and technology : a journal of the International Association on Water Pollution Research 90 (4) (2024)
Aicha Kriaa, Vincent Mariaule, Charlotte De Rudder, Amin Jablaoui, Harry Sokol, Paul Wilmes, Emmanuelle Maguin, Moez Rhimi
From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders. Gut microbes 16 (1) (2024)
Aicha Kriaa, Vincent Mariaule, Charlotte De Rudder, Amin Jablaoui, Harry Sokol, Paul Wilmes, Emmanuelle Maguin, Moez Rhimi
From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders. Gut microbes 16 (1) (2024)
Mara Lucchetti, Gabriel Werr, Sofia Johansson, Laurent Barbe, Léa Grandmougin, Paul Wilmes, Maria Tenje
Integration of multiple flexible electrodes for real-time detection of barrier formation with spatial resolution in a gut-on-chip system. Microsystems & nanoengineering 10 (2024)
Benoit Josef Kunath, Charlotte De Rudder, Cédric Christian Laczny, Elisabeth Letellier, Paul Wilmes
The oral-gut microbiome axis in health and disease. Nature reviews. Microbiology (2024)
Mara Lucchetti, Kehinde Oluwasegun Aina, Léa Grandmougin, Christian Jaeger, Pau Perez-Escriva, Elisabeth Letellier, Alexander S Mosig, Paul Wilmes
An Organ-on-Chip Platform for Simulating Drug Metabolism Along the Gut-Liver Axis. Advanced healthcare materials (2024)
Mara Lucchetti, Kehinde Oluwasegun Aina, Léa Grandmougin, Christian Jaeger, Pau Perez-Escriva, Elisabeth Letellier, Alexander S Mosig, Paul Wilmes
An Organ-on-chip Platform for Simulating Drug Metabolism along the Gut-liver Axis. Advanced healthcare materials (2024)
Aicha Kriaa, Vincent Mariaule, Charlotte De Rudder, Amin Jablaoui, Harry Sokol, Paul Wilmes, Emmanuelle Maguin, Moez Rhimi
From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders. Gut microbes 16 (1) (2024)
Aicha Kriaa, Vincent Mariaule, Charlotte De Rudder, Amin Jablaoui, Harry Sokol, Paul Wilmes, Emmanuelle Maguin, Moez Rhimi
From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders. Gut microbes 16 (1) (2024)
Indra Monsees, Sarah P Esser, Victoria Turzynski, André Soares, Polina Novikova, Patrick May, Cristina Moraru, Mike Hasenberg, Janina Rahlff, Paul Wilmes, Andreas Klingl, Alexander J Probst
Spatio-functional organization in virocells of small uncultivated archaea from the deep biosphere. The ISME journal (2023)
Eveline Santos da Silva, Jean-Yves Servais, Michel Kohnen, Vic Arendt, Therese Staub, null The Con-Vince Consortium, null The CoVaLux Consortium, Rejko Krüger, Guy Fagherazzi, Paul Wilmes, Judith M Hübschen, Markus Ollert, Danielle Perez-Bercoff, Carole Seguin-Devaux
Validation of a SARS-CoV-2 Surrogate Neutralization Test Detecting Neutralizing Antibodies against the Major Variants of Concern. International journal of molecular sciences 24 (19) (2023)
Susheel Bhanu Busi, Laura de Nies, Paraskevi Pramateftaki, Massimo Bourquin, Tyler J Kohler, Leïla Ezzat, Stilianos Fodelianakis, Grégoire Michoud, Hannes Peter, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Valentina Galata, Paul Wilmes, Tom Battin
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. Microbiology spectrum (2023)
Susheel Bhanu Busi, Laura de Nies, Paraskevi Pramateftaki, Massimo Bourquin, Tyler J Kohler, Leïla Ezzat, Stilianos Fodelianakis, Grégoire Michoud, Hannes Peter, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Valentina Galata, Paul Wilmes, Tom Battin
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. Microbiology spectrum 11 (1) (2023)
Susheel Bhanu Busi, Laura de Nies, Paraskevi Pramateftaki, Massimo Bourquin, Tyler J Kohler, Leïla Ezzat, Stilianos Fodelianakis, Grégoire Michoud, Hannes Peter, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Valentina Galata, Paul Wilmes, Tom Battin
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. Microbiology spectrum 11 (1) (2023)
Francesco Delogu, Benoit J Kunath, Pedro M Queirós, Rashi Halder, Laura A Lebrun, Phillip Byron Pope, Patrick May, Stefanie Widder, Emilie E L Muller, Paul Wilmes
Forecasting the dynamics of a complex microbial community using integrated meta-omics. Nature ecology & evolution (2023)
Susheel Bhanu Busi, Laura de Nies, Paraskevi Pramateftaki, Massimo Bourquin, Tyler J Kohler, Leïla Ezzat, Stilianos Fodelianakis, Grégoire Michoud, Hannes Peter, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Valentina Galata, Paul Wilmes, Tom Battin
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. Microbiology spectrum 11 (1) (2023)
Dominik Ternes, Mina Tsenkova, Vitaly Igorevich Pozdeev, Marianne Meyers, Eric Koncina, Sura Atatri, Martine Schmitz, Jessica Karta, Maryse Schmoetten, Almut Heinken, Fabien Rodriguez, Catherine Delbrouck, Anthoula Gaigneaux, Aurélien Ginolhac, Tam Thuy Dan Nguyen, Lea Grandmougin, Audrey Frachet-Bour, Camille Martin-Gallausiaux, Maria Pires Pacheco, Lorie Neuberger-Castillo, Paulo Miranda, Nikolaus Zuegel, Jean-Yves Ferrand, Manon Gantenbein, Thomas Sauter, Daniel Joseph Slade, Ines Thiele, Johannes Meiser, Serge Haan, Paul Wilmes, Elisabeth Letellier
Author Correction: The gut microbial metabolite formate exacerbates colorectal cancer progression. Nature metabolism (2023)
Aurélie Fischer, Nolwenn Badier, Lu Zhang, Abir Elbéji, Paul Wilmes, Pauline Oustric, Charles Benoy, Markus Ollert, Guy Fagherazzi
Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study. International journal of environmental research and public health 19 (23) (2022)
Oskar Hickl, Pedro Queirós, Paul Wilmes, Patrick May, Anna Heintz-Buschart
binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. Briefings in bioinformatics 23 (6) (2022)
Aurélie Fischer, Nolwenn Badier, Lu Zhang, Abir Elbéji, Paul Wilmes, Pauline Oustric, Charles Benoy, Markus Ollert, Guy Fagherazzi
Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study. International journal of environmental research and public health 19 (23) (2022)
Aurélie Fischer, Nolwenn Badier, Lu Zhang, Abir Elbéji, Paul Wilmes, Pauline Oustric, Charles Benoy, Markus Ollert, Guy Fagherazzi
Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study. International journal of environmental research and public health 19 (23) (2022)
Susheel Bhanu Busi, Massimo Bourquin, Stilianos Fodelianakis, Grégoire Michoud, Tyler J Kohler, Hannes Peter, Paraskevi Pramateftaki, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Laura de Nies, Ramona Marasco, Daniele Daffonchio, Leïla Ezzat, Paul Wilmes, Tom Jan Battin
Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams. Nature communications 13 (1) (2022)
Massimo Bourquin, Susheel Bhanu Busi, Stilianos Fodelianakis, Hannes Peter, Alex Washburne, Tyler J Kohler, Leïla Ezzat, Grégoire Michoud, Paul Wilmes, Tom Jan Battin
The microbiome of cryospheric ecosystems. Nature communications 13 (1) (2022)
Aurélie Fischer, Nolwenn Badier, Lu Zhang, Abir Elbéji, Paul Wilmes, Pauline Oustric, Charles Benoy, Markus Ollert, Guy Fagherazzi
Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study. International journal of environmental research and public health 19 (23) (2022)
Pedro Queirós, Francesco Delogu, Oskar Hickl, Patrick May, Paul Wilmes
Mantis: flexible and consensus-driven genome annotation. GigaScience 10 (6) (2022)
Valentina Galata, Susheel Bhanu Busi, Benoit Josef Kunath, Laura de Nies, Magdalena Całusińska, Rashi Halder, Patrick May, Paul Wilmes, Cédric Christian Laczny
Functional meta-omics provide critical insights into long- and short-read assemblies. Briefings in bioinformatics 22 (6) (2022)
Laura de Nies, Susheel Bhanu Busi, Mina Tsenkova, Rashi Halder, Elisabeth Letellier, Paul Wilmes
Evolution of the murine gut resistome following broad-spectrum antibiotic treatment. Nature communications 13 (1) (2022)
Begoña Talavera Andújar, Dagny Aurich, Velma T E Aho, Randolph Reyes Singh, Tiejun Cheng, Leonid Zaslavsky, Evan E Bolton, Brit Mollenhauer, Paul Wilmes, Emma L Schymanski
Studying the Parkinson's disease metabolome and exposome in biological samples through different analytical and cheminformatics approaches: a pilot study. Analytical and bioanalytical chemistry 414 (25) (2022)
Dominik Ternes, Mina Tsenkova, Vitaly Igorevich Pozdeev, Marianne Meyers, Eric Koncina, Sura Atatri, Martine Schmitz, Jessica Karta, Maryse Schmoetten, Almut Heinken, Fabien Rodriguez, Catherine Delbrouck, Anthoula Gaigneaux, Aurélien Ginolhac, Tam Thuy Dan Nguyen, Lea Grandmougin, Audrey Frachet-Bour, Camille Martin-Gallausiaux, Maria Pires Pacheco, Lorie Neuberger-Castillo, Paulo Miranda, Nikolaus Zuegel, Jean-Yves Ferrand, Manon Gantenbein, Thomas Sauter, Daniel Joseph Slade, Ines Thiele, Johannes Meiser, Serge Haan, Paul Wilmes, Elisabeth Letellier
The gut microbial metabolite formate exacerbates colorectal cancer progression. Nature metabolism 4 (4) (2022)
Tyler J Kohler, Stilianos Fodelianakis, Grégoire Michoud, Leïla Ezzat, Massimo Bourquin, Hannes Peter, Susheel Bhanu Busi, Paraskevi Pramateftaki, Nicola Deluigi, Michail Styllas, Matteo Tolosano, Vincent de Staercke, Martina Schön, Jade Brandani, Ramona Marasco, Daniele Daffonchio, Paul Wilmes, Tom Jan Battin
Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function. Global change biology 28 (12) (2022)
Claire Pauly, Enrico Glaab, Maxime Hansen, Camille Martin-Gallausiaux, Mirko Ledda, Tainá M Marques, Paul Wilmes, Rejko Krüger, Nico J Diederich, null null
Disease Progression, Resilience, and Inflammation Markers During the Coronavirus Disease 2019 Pandemic in Parkinson's Disease. Movement disorders : official journal of the Movement Disorder Society 37 (11) (2022)
Laura de Nies, Susheel Bhanu Busi, Benoit Josef Kunath, Patrick May, Paul Wilmes
Mobilome-driven segregation of the resistome in biological wastewater treatment. eLife 11 (2022)
Stilianos Fodelianakis, Alex D Washburne, Massimo Bourquin, Paraskevi Pramateftaki, Tyler J Kohler, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Susheel Bhanu Busi, Jade Brandani, Paul Wilmes, Hannes Peter, Tom Jan Battin
Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome. The ISME journal (2021)
Susheel Bhanu Busi, Laura de Nies, Janine Habier, Linda Wampach, Joëlle V Fritz, Anna Heintz-Buschart, Patrick May, Rashi Halder, Carine de Beaufort, Paul Wilmes
Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life. ISME communications 1 (1) (2021)
Pedro Queirós, Polina Novikova, Paul Wilmes, Patrick May
Unification of functional annotation descriptions using text mining. Biological chemistry 402 (8) (2021)
Chloe Mirzayi, Audrey Renson, null null, null null, Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Rühlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron
Reporting guidelines for human microbiome research: the STORMS checklist. Nature medicine 27 (11) (2021)
Tim Van Den Bossche, Benoit Josef Kunath, Kay Schallert, Stephanie S Schäpe, Paul E Abraham, Jean Armengaud, Magnus Øverlie Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J Giannone, Timothy J Griffin, Live Heldal Hagen, Rashi Halder, Céline Henry, Robert L Hettich, Robert Heyer, Pratik D Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L Peters, Olivier Pible, Pedro T Queiros, Udo Reichl, Bernhard Y Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin Von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, Thilo Muth
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature communications 12 (1) (2021)
Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz-Buschart, Cedric Christian Laczny, Patrick May, Paul Wilmes
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. Microbiome 9 (1) (2021)
Bianca De Saedeleer, Antoine Malabirade, Javier Ramiro-Garcia, Janine Habier, Jean-Pierre Trezzi, Samantha L Peters, Annegrät Daujeumont, Rashi Halder, Christian Jaeger, Susheel Bhanu Busi, Patrick May, Wolfgang Oertel, Brit Mollenhauer, Cédric C Laczny, Robert L Hettich, Paul Wilmes
Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics. ISME communications 1 (2021)
Susheel Bhanu Busi, Laura de Nies, Janine Habier, Linda Wampach, Joëlle V Fritz, Anna Heintz-Buschart, Patrick May, Rashi Halder, Carine de Beaufort, Paul Wilmes
Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life. ISME communications 1 (1) (2021)
Tim Van Den Bossche, Magnus Øverlie Arntzen, Dörte Becher, Dirk Benndorf, Vincent G H Eijsink, Céline Henry, Pratik D Jagtap, Nico Jehmlich, Catherine Juste, Benoit Josef Kunath, Bart Mesuere, Thilo Muth, Phillip Byron Pope, Jana Seifert, Alessandro Tanca, Sergio Uzzau, Paul Wilmes, Robert L Hettich, Jean Armengaud
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome 9 (1) (2021)
Susana Martínez Arbas, Shaman Narayanasamy, Malte Herold, Laura A Lebrun, Michael R Hoopmann, Sujun Li, Tony J Lam, Benoit Josef Kunath, Nathan D Hicks, Cindy Meng-Hsin Liu, Lance B Price, Cédric Christian Laczny, John D Gillece, James M Schupp, Paul S Keim, Robert L Moritz, Karoline Faust, Haixu Tang, Yuzhen Ye, Alexander Skupin, Patrick May, Emilie E L Muller, Paul Wilmes
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature microbiology 6 (1) (2020)
Karim Hayoun, Emilie Geersens, Cédric Christian Laczny, Rashi Halder, Carmen Lázaro Sánchez, Abhijit Manna, Françoise Bringel, Michaël Ryckelynck, Paul Wilmes, Emilie E L Muller, Béatrice Alpha-Bazin, Jean Armengaud, Stéphane Vuilleumier
Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics. Microorganisms 8 (12) (2020)
Malte Herold, Susana Martínez Arbas, Shaman Narayanasamy, Abdul R Sheik, Luise A K Kleine-Borgmann, Laura A Lebrun, Benoit Josef Kunath, Hugo Roume, Irina Bessarab, Rohan B H Williams, John D Gillece, James M Schupp, Paul S Keim, Christian Jäger, Michael R Hoopmann, Robert L Moritz, Yuzhen Ye, Sujun Li, Haixu Tang, Anna Heintz-Buschart, Patrick May, Emilie E L Muller, Cédric Christian Laczny, Paul Wilmes
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature communications 11 (1) (2020)
Antoine Buetti-Dinh, Malte Herold, Stephan Christel, Mohamed El Hajjami, Francesco Delogu, Olga Ilie, Sören Bellenberg, Paul Wilmes, Ansgar Poetsch, Wolfgang Sand, Mario Vera, Igor V Pivkin, Ran Friedman, Mark Dopson
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations. BMC bioinformatics 21 (1) (2020)
Thomas Sebastian Benedikt Schmidt, Matthew R Hayward, Luis Pedro Coelho, Simone S Li, Paul I Costea, Anita Y Voigt, Jakob Wirbel, Oleksandr M Maistrenko, Renato Jc Alves, Emma Bergsten, Carine de Beaufort, Iradj Sobhani, Anna Heintz-Buschart, Shinichi Sunagawa, Georg Zeller, Paul Wilmes, Peer Bork
Extensive transmission of microbes along the gastrointestinal tract. eLife 8 (2019)
Oskar Hickl, Anna Heintz-Buschart, Anke Trautwein-Schult, Rajna Hercog, Peer Bork, Paul Wilmes, Dörte Becher
Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome. Microorganisms 7 (9) (2019)
Eric W Deutsch, Yasset Perez Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, Emma L Schymanski, Paul Wilmes, Viktoria Dorfer, Bernhard Kuster, Pieter-Jan Volders, Nico Jehmlich, Johannes P C Vissers, Dennis W Wolan, Ana Y Wang, Luis Mendoza, Jim Shofstahl, Andrew W Dowsey, Johannes Griss, Reza M Salek, Steffen Neumann, Pierre-Alain Binz, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira, Hannes L Röst
Expanding the Use of Spectral Libraries in Proteomics. Journal of proteome research 17 (12) (2018)
Anna Heintz-Buschart, Dilmurat Yusuf, Anne Kaysen, Alton Etheridge, Joëlle V Fritz, Patrick May, Carine de Beaufort, Bimal B Upadhyaya, Anubrata Ghosal, David J Galas, Paul Wilmes
Small RNA profiling of low biomass samples: identification and removal of contaminants. BMC biology 16 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Paul Wilmes