Timothy M D Ebbels (Timothy Ebbels)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 37

Top Topics

Mass Spectrometry

Convolutional Neural Network

Top Venues

Analytical chemistry

PLoS computational biology

Bioinformatics (Oxford, England)

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Beatriz Jiménez, Timothy M D Ebbels
Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning. Analytical chemistry 96 (29) (2024)
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Beatriz Jiménez, Timothy M D Ebbels
Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning. Analytical chemistry 96 (29) (2024)
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Beatriz Jiménez, Timothy M D Ebbels
Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning. Analytical chemistry 96 (29) (2024)
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Melpomeni Kasapi, Kexin Xu, Timothy M D Ebbels, Declan P O'Regan, James S Ware, Joram Matthias Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinformatics (Oxford, England) 40 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Beatriz Jiménez, Timothy M D Ebbels
Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning. Analytical chemistry 96 (29) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Yan Yan, Michael T Judge, Toby Athersuch, Yuchen Xiang, Zhaolu Liu, Beatriz Jiménez, Timothy M D Ebbels
Resolution Enhancement of Metabolomic J-Res NMR Spectra Using Deep Learning. Analytical chemistry (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Johnny R Östman, Rui C Pinto, Timothy M D Ebbels, Elin Thysell, Göran Hallmans, Ali A Moazzami
Identification of prediagnostic metabolites associated with prostate cancer risk by untargeted mass spectrometry-based metabolomics: A case-control study nested in the Northern Sweden Health and Disease Study. International journal of cancer 151 (12) (2022)
Rui C Pinto, Ibrahim Karaman, Matthew R Lewis, Jenny Hällqvist, Manuja Kaluarachchi, Gonçalo Graça, Elena Chekmeneva, Brenan Durainayagam, Mohsen Ghanbari, M Arfan Ikram, Henrik Zetterberg, Julian Griffin, Paul Elliott, Ioanna Tzoulaki, Abbas Dehghan, David Herrington, Timothy M D Ebbels
Finding Correspondence between Metabolomic Features in Untargeted Liquid Chromatography-Mass Spectrometry Metabolomics Datasets. Analytical chemistry 94 (14) (2022)
Gonçalo Graça, Yuheng Cai, Chung-Ho E Lau, Panagiotis A Vorkas, Matthew R Lewis, Elizabeth J Want, David Herrington, Timothy M D Ebbels
Automated Annotation of Untargeted All-Ion Fragmentation LC-MS Metabolomics Data with MetaboAnnotatoR. Analytical chemistry 94 (8) (2022)
Michael T Judge, Timothy M D Ebbels
Problems, principles and progress in computational annotation of NMR metabolomics data. Metabolomics : Official journal of the Metabolomic Society 18 (12) (2022)
Cecilia Wieder, Jacob Guy Bundy, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Juliette Cooke, Rachel P J Lai, Fabien Jourdan, Timothy M D Ebbels
Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics. Environmental science & technology 56 (20) (2022)
Benjamin J Blaise, Gonçalo D S Correia, Gordon A Haggart, Izabella Surowiec, Caroline Sands, Matthew R Lewis, Jake T M Pearce, Johan Trygg, Jeremy K Nicholson, Elaine Holmes, Timothy M D Ebbels
Statistical analysis in metabolic phenotyping. Nature protocols 16 (9) (2021)
Chung-Ho E Lau, Victoria Taylor-Bateman, Panagiotis A Vorkas, Gonçalo Graça, Thanh-Huyen Thi Vu, Lifang Hou, Elena Chekmeneva, Timothy M D Ebbels, Queenie Chan, Linda V Van Horn, Elaine Holmes
Metabolic Signatures of Gestational Weight Gain and Postpartum Weight Loss in a Lifestyle Intervention Study of Overweight and Obese Women. Metabolites 10 (12) (2020)
Jacopo Iacovacci, Alina Peluso, Timothy M D Ebbels, Markus Ralser, Robert C Glen
Extraction and Integration of Genetic Networks from Short-Profile Omic Data Sets. Metabolites 10 (11) (2020)
Qian Gao, Lars Ove Dragsted, Timothy M D Ebbels
Comparison of Bi- and Tri-Linear PLS Models for Variable Selection in Metabolomic Time-Series Experiments. Metabolites 9 (5) (2019)
Mark R Viant, Timothy M D Ebbels, Richard D Beger, Drew R Ekman, David J T Epps, Hennicke Kamp, Pim E G Leonards, George D Loizou, James I MacRae, Bennard van Ravenzwaay, Philippe Rocca-Serra, Reza M Salek, Tilmann Walk, Ralf J M Weber
Use cases, best practice and reporting standards for metabolomics in regulatory toxicology. Nature communications 10 (1) (2019)
Marcelo P Segura-Lepe, Hector C Keun, Timothy M D Ebbels
Predictive modelling using pathway scores: robustness and significance of pathway collections. BMC bioinformatics 20 (1) (2019)
Lifeng Ye, Maria De Iorio, Timothy M D Ebbels
Bayesian estimation of the number of protonation sites for urinary metabolites from NMR spectroscopic data. Metabolomics : Official journal of the Metabolomic Society 14 (5) (2018)