Katerina J Kechris (Katerina Kechris)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 65

Top Topics

Chronic Obstructive Pulmonary Disease

Dna Methylation

Top Venues

PLoS computational biology

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Ellen C Francis, Katerina J Kechris, Randi K Johnson, Shristi Rawal, Wimal Pathmasiri, Susan J Sumner, Xiuxia Du, Thomas Jansson, Dana Dabelea, Susan J Sumner, Wei Perng
Maternal Serum Metabolomics in Mid-Pregnancy Identifies Lipid Pathways as a Key Link to Offspring Obesity in Early Childhood. International journal of molecular sciences 25 (14) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Ellen C Francis, Katerina J Kechris, Randi K Johnson, Shristi Rawal, Wimal Pathmasiri, Susan J Sumner, Xiuxia Du, Thomas Jansson, Dana Dabelea, Susan J Sumner, Wei Perng
Maternal Serum Metabolomics in Mid-Pregnancy Identifies Lipid Pathways as a Key Link to Offspring Obesity in Early Childhood. International journal of molecular sciences 25 (14) (2024)
Ellen C Francis, Katerina J Kechris, Randi K Johnson, Shristi Rawal, Wimal Pathmasiri, Susan J Sumner, Xiuxia Du, Thomas Jansson, Dana Dabelea, Susan J Sumner, Wei Perng
Maternal Serum Metabolomics in Mid-Pregnancy Identifies Lipid Pathways as a Key Link to Offspring Obesity in Early Childhood. International journal of molecular sciences 25 (14) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Ellen C Francis, Katerina J Kechris, Randi K Johnson, Shristi Rawal, Wimal Pathmasiri, Susan J Sumner, Xiuxia Du, Thomas Jansson, Dana Dabelea, Susan J Sumner, Wei Perng
Maternal Serum Metabolomics in Mid-Pregnancy Identifies Lipid Pathways as a Key Link to Offspring Obesity in Early Childhood. International journal of molecular sciences 25 (14) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. bioRxiv : the preprint server for biology (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Cecilia Wieder, Juliette Cooke, Clement Frainay, Nathalie Poupin, Russell P Bowler, Fabien Jourdan, Katerina J Kechris, Rachel Pj Lai, Timothy M D Ebbels
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. PLoS computational biology 20 (3) (2024)
Randi K Johnson, Amanda J Ireton, Patrick M Carry, Lauren A Vanderlinden, Fran Dong, Alex Romero, David R Johnson, Debashis Ghosh, Fan Yang, Brigitte Frohnert, Ivana V Yang, Katerina J Kechris, Marian Rewers, Jill M Norris
DNA Methylation Near DLGAP2 May Mediate the Relationship between Family History of Type 1 Diabetes and Type 1 Diabetes Risk. Pediatric diabetes 2023 (2023)
Randi K Johnson, Amanda J Ireton, Patrick M Carry, Lauren A Vanderlinden, Fran Dong, Alex Romero, David R Johnson, Debashis Ghosh, Fan Yang, Brigitte Frohnert, Ivana V Yang, Katerina J Kechris, Marian Rewers, Jill M Norris
DNA Methylation Near DLGAP2 May Mediate the Relationship between Family History of Type 1 Diabetes and Type 1 Diabetes Risk. Pediatric diabetes 2023 (2023)
Teresa Buckner, Randi K Johnson, Lauren A Vanderlinden, Patrick M Carry, Alex Romero, Suna Onengut-Gumuscu, Wei-Min Chen, Oliver Fiehn, Brigitte I Frohnert, Tessa Crume, Wei Perng, Katerina J Kechris, Marian Rewers, Jill M Norris
An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). Nutrients 15 (4) (2023)
Lynne Rosenberg, Cuining Liu, Rinku Sharma, Cheyret Wood, Carrie A Vyhlidal, Roger Gaedigk, Alvin T Kho, John P Ziniti, Juan C Celedón, Kelan G Tantisira, Scott T Weiss, Michael J McGeachie, Katerina J Kechris, Sunita Sharma
Intrauterine Smoke Exposure, microRNA Expression during Human Lung Development, and Childhood Asthma. International journal of molecular sciences 24 (9) (2023)
Randi K Johnson, Amanda J Ireton, Patrick M Carry, Lauren A Vanderlinden, Fran Dong, Alex Romero, David R Johnson, Debashis Ghosh, Fan Yang, Brigitte Frohnert, Ivana V Yang, Katerina J Kechris, Marian Rewers, Jill M Norris
DNA Methylation Near DLGAP2 May Mediate the Relationship between Family History of Type 1 Diabetes and Type 1 Diabetes Risk. Pediatric diabetes 2023 (2023)
Thao Vu, Elizabeth M Litkowski, Weixuan Liu, Katherine A Pratte, Leslie Lange, Russell P Bowler, Farnoush Banaei-Kashani, Katerina J Kechris
NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinformatics (Oxford, England) 39 (1) (2023)
Randi K Johnson, Amanda J Ireton, Patrick M Carry, Lauren A Vanderlinden, Fran Dong, Alex Romero, David R Johnson, Debashis Ghosh, Fan Yang, Brigitte Frohnert, Ivana V Yang, Katerina J Kechris, Marian Rewers, Jill M Norris
DNA Methylation Near DLGAP2 May Mediate the Relationship between Family History of Type 1 Diabetes and Type 1 Diabetes Risk. Pediatric diabetes 2023 (2023)
Teresa Buckner, Randi K Johnson, Lauren A Vanderlinden, Patrick M Carry, Alex Romero, Suna Onengut-Gumuscu, Wei-Min Chen, Oliver Fiehn, Brigitte I Frohnert, Tessa Crume, Wei Perng, Katerina J Kechris, Marian Rewers, Jill M Norris
An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). Nutrients 15 (4) (2023)
Gregory Farage, Chenhao Zhao, Hyo Young Choi, Timothy J Garrett, Katerina J Kechris, Marshall B Elam, Saunak Sen
Matrix Linear Models for connecting metabolite composition to individual characteristics. bioRxiv : the preprint server for biology (2023)
Lynne Rosenberg, Cuining Liu, Rinku Sharma, Cheyret Wood, Carrie A Vyhlidal, Roger Gaedigk, Alvin T Kho, John P Ziniti, Juan C Celedón, Kelan G Tantisira, Scott T Weiss, Michael J McGeachie, Katerina J Kechris, Sunita Sharma
Intrauterine Smoke Exposure, microRNA Expression during Human Lung Development, and Childhood Asthma. International journal of molecular sciences 24 (9) (2023)
Gregory Farage, Chenhao Zhao, Hyo Young Choi, Timothy J Garrett, Katerina J Kechris, Marshall B Elam, Saunak Sen
Matrix Linear Models for connecting metabolite composition to individual characteristics. bioRxiv : the preprint server for biology (2023)
Thao Vu, Elizabeth M Litkowski, Weixuan Liu, Katherine A Pratte, Leslie Lange, Russell P Bowler, Farnoush Banaei-Kashani, Katerina J Kechris
NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinformatics (Oxford, England) 39 (1) (2023)
Thao Vu, Elizabeth M Litkowski, Weixuan Liu, Katherine A Pratte, Leslie Lange, Russell P Bowler, Farnoush Banaei-Kashani, Katerina J Kechris
NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinformatics (Oxford, England) 39 (1) (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Gregory Farage, Chenhao Zhao, Hyo Young Choi, Timothy J Garrett, Katerina J Kechris, Marshall B Elam, Saunak Sen
Matrix Linear Models for connecting metabolite composition to individual characteristics. bioRxiv : the preprint server for biology (2023)
Teresa Buckner, Randi K Johnson, Lauren A Vanderlinden, Patrick M Carry, Alex Romero, Suna Onengut-Gumuscu, Wei-Min Chen, Oliver Fiehn, Brigitte I Frohnert, Tessa Crume, Wei Perng, Katerina J Kechris, Marian Rewers, Jill M Norris
An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). Nutrients 15 (4) (2023)
Andrew C Hill, Claire Guo, Elizabeth M Litkowski, Ani W Manichaikul, Bing Yu, Iain R Konigsberg, Betty A Gorbet, Leslie A Lange, Katherine A Pratte, Katerina J Kechris, Matthew DeCamp, Marilyn Coors, Victor E Ortega, Stephen S Rich, Jerome I Rotter, Robert E Gerzsten, Clary B Clish, Jeffrey L Curtis, Xiaowei Hu, Ma-En Obeidat, Melody Morris, Joseph Loureiro, Debby Ngo, Wanda K O'Neal, Deborah A Meyers, Eugene R Bleecker, Brian D Hobbs, Michael H Cho, Farnoush Banaei-Kashani, Russell P Bowler
Large scale proteomic studies create novel privacy considerations. Scientific reports 13 (1) (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Randi K Johnson, Amanda J Ireton, Patrick M Carry, Lauren A Vanderlinden, Fran Dong, Alex Romero, David R Johnson, Debashis Ghosh, Fan Yang, Brigitte Frohnert, Ivana V Yang, Katerina J Kechris, Marian Rewers, Jill M Norris
DNA Methylation Near DLGAP2 May Mediate the Relationship between Family History of Type 1 Diabetes and Type 1 Diabetes Risk. Pediatric diabetes 2023 (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Gregory Farage, Chenhao Zhao, Hyo Young Choi, Timothy J Garrett, Katerina J Kechris, Marshall B Elam, Saunak Sen
Matrix Linear Models for connecting metabolite composition to individual characteristics. bioRxiv : the preprint server for biology (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Thao Vu, Elizabeth M Litkowski, Weixuan Liu, Katherine A Pratte, Leslie Lange, Russell P Bowler, Farnoush Banaei-Kashani, Katerina J Kechris
NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinformatics (Oxford, England) 39 (1) (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Teresa Buckner, Randi K Johnson, Lauren A Vanderlinden, Patrick M Carry, Alex Romero, Suna Onengut-Gumuscu, Wei-Min Chen, Oliver Fiehn, Brigitte I Frohnert, Tessa Crume, Wei Perng, Katerina J Kechris, Marian Rewers, Jill M Norris
An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). Nutrients 15 (4) (2023)
Teresa Buckner, Randi K Johnson, Lauren A Vanderlinden, Patrick M Carry, Alex Romero, Suna Onengut-Gumuscu, Wei-Min Chen, Oliver Fiehn, Brigitte I Frohnert, Tessa Crume, Wei Perng, Katerina J Kechris, Marian Rewers, Jill M Norris
An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). Nutrients 15 (4) (2023)
Teresa Buckner, Randi K Johnson, Lauren A Vanderlinden, Patrick M Carry, Alex Romero, Suna Onengut-Gumuscu, Wei-Min Chen, Oliver Fiehn, Brigitte I Frohnert, Tessa Crume, Wei Perng, Katerina J Kechris, Marian Rewers, Jill M Norris
An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). Nutrients 15 (4) (2023)
Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D Hobbs, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Deep learning on graphs for multi-omics classification of COPD. PloS one 18 (4) (2023)
Souvik Seal, Qunhua Li, Elle Butler Basner, Laura M Saba, Katerina J Kechris
RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks. PLoS computational biology 19 (1) (2023)
Gregory Farage, Chenhao Zhao, Hyo Young Choi, Timothy J Garrett, Katerina J Kechris, Marshall B Elam, Saunak Sen
Matrix Linear Models for connecting metabolite composition to individual characteristics. bioRxiv : the preprint server for biology (2023)
Cuining Liu, Jeanette Gaydos, Rebecca Johnson-Paben, Katerina J Kechris, Ellen L Burnham, Sunita Sharma
Chronic Marijuana Use Is Associated with Gene Expression Changes in BAL. American journal of respiratory cell and molecular biology 66 (2) (2022)
Ellen C Francis, Katerina J Kechris, Catherine C Cohen, Gregory Michelotti, Dana M Dabelea, Wei Perng
Metabolomic Profiles in Childhood and Adolescence Are Associated with Fetal Overnutrition. Metabolites 12 (3) (2022)
Suneeta Godbole, Wassim W Labaki, Katherine A Pratte, Andrew Hill, Matthew Moll, Annette T Hastie, Stephen P Peters, Andrew Gregory, Victor E Ortega, Dawn DeMeo, Michael H Cho, Surya P Bhatt, J Michael Wells, Igor Z Barjaktarevic, Kathleen A Stringer, Alejandro Comellas, Wanda O'Neal, Katerina J Kechris, Russell P Bowler
A Metabolomic Severity Score for Airflow Obstruction and Emphysema. Metabolites 12 (5) (2022)
Lucas A Gillenwater, Katerina J Kechris, Katherine A Pratte, Nichole A Reisdorph, Irina Petrache, Wassim W Labaki, Wanda O'Neal, Jerry A Krishnan, Victor E Ortega, Dawn L DeMeo, Russell P Bowler
Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema. Metabolites 11 (3) (2021)
Charlie M Carpenter, Weiming Zhang, Lucas Gillenwater, Cameron Severn, Tusharkanti Ghosh, Russell P Bowler, Katerina J Kechris, Debashis Ghosh
PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes. PLoS computational biology 17 (10) (2021)
Zachary L Nikolakis, Nicole R Hales, Blair W Perry, Drew R Schield, Laura E Timm, Yang Liu, Bo Zhong, Katerina J Kechris, Elizabeth J Carlton, David D Pollock, Todd A Castoe
Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum). PLoS neglected tropical diseases 15 (1) (2021)
Timothy Vigers, Lauren A Vanderlinden, Randi K Johnson, Patrick M Carry, Ivana Yang, Brian C DeFelice, Alexander M Kaizer, Laura Pyle, Marian Rewers, Oliver Fiehn, Jill M Norris, Katerina J Kechris
A Mediation Approach to Discovering Causal Relationships between the Metabolome and DNA Methylation in Type 1 Diabetes. Metabolites 11 (8) (2021)
Lucas A Gillenwater, Shahab Helmi, Evan Stene, Katherine A Pratte, Yonghua Zhuang, Ronald P Schuyler, Leslie Lange, Peter J Castaldi, Craig P Hersh, Farnoush Banaei-Kashani, Russell P Bowler, Katerina J Kechris
Multi-omics subtyping pipeline for chronic obstructive pulmonary disease. PloS one 16 (8) (2021)
Elizabeth Walker-Short, Teresa Buckner, Timothy Vigers, Patrick Carry, Lauren A Vanderlinden, Fran Dong, Randi K Johnson, Ivana V Yang, Katerina J Kechris, Marian Rewers, Jill M Norris
Epigenome-Wide Association Study of Infant Feeding and DNA Methylation in Infancy and Childhood in a Population at Increased Risk for Type 1 Diabetes. Nutrients 13 (11) (2021)
Jonathan Dekermanjian, Wladimir Labeikovsky, Debashis Ghosh, Katerina J Kechris
MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools. Metabolites 11 (10) (2021)
Kejun Guo, Guannan Shen, Jon Kibbie, Tania Gonzalez, Stephanie M Dillon, Harry A Smith, Emily H Cooper, Kerry J Lavender, Kim J Hasenkrug, Kathrin Sutter, Ulf Dittmer, Miranda E Kroehl, Katerina J Kechris, Cara C Wilson, Mario L Santiago
Qualitative Differences Between the IFNα subtypes and IFNβ Influence Chronic Mucosal HIV-1 Pathogenesis. PLoS pathogens 16 (10) (2020)
Richard A Radcliffe, Robin D Dowell, Aaron T Odell, Phillip Andrew Richmond, Beth Bennett, Colin Larson, Katerina J Kechris, Laura M Saba, Pratyaydipta Rudra, Shi Wen
Systems genetics analysis of the LXS recombinant inbred mouse strains:Genetic and molecular insights into acute ethanol tolerance. PloS one 15 (10) (2020)