Ting Ni

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 41

Top Topics

Binding Protein

Pluripotent Stem Cells

Children With Cerebral Palsy

Genome Wide Association Study

Top Venues

Nature communications

Nature genetics

Genome research

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Zhaozhao Zhao, Yu Chen, Xudong Zou, Limin Lin, Xiaolan Zhou, Xiaomeng Cheng, Guangrui Yang, Qiushi Xu, Lihai Gong, Lei Li, Ting Ni
Pan-cancer transcriptome analysis reveals widespread regulation through alternative tandem transcription initiation. Science advances 10 (28) (2024)
Hui Chen, Zeyang Wang, Lihai Gong, Qixuan Wang, Wenyan Chen, Jia Wang, Xuelian Ma, Ruofan Ding, Xing Li, Xudong Zou, Mireya Plass, Cheng Lian, Ting Ni, Gong-Hong Wei, Weibo Xie, Lin Deng, Lei Li
A distinct class of pan-cancer susceptibility genes revealed by an alternative polyadenylation transcriptome-wide association study. Nature communications 15 (1) (2024)
Hui Chen, Zeyang Wang, Lihai Gong, Qixuan Wang, Wenyan Chen, Jia Wang, Xuelian Ma, Ruofan Ding, Xing Li, Xudong Zou, Mireya Plass, Cheng Lian, Ting Ni, Gong-Hong Wei, Weibo Xie, Lin Deng, Lei Li
A distinct class of pan-cancer susceptibility genes revealed by an alternative polyadenylation transcriptome-wide association study. Nature communications 15 (1) (2024)
Hui Chen, Zeyang Wang, Lihai Gong, Qixuan Wang, Wenyan Chen, Jia Wang, Xuelian Ma, Ruofan Ding, Xing Li, Xudong Zou, Mireya Plass, Cheng Lian, Ting Ni, Gong-Hong Wei, Weibo Xie, Lin Deng, Lei Li
A distinct class of pan-cancer susceptibility genes revealed by an alternative polyadenylation transcriptome-wide association study. Nature communications 15 (1) (2024)
Hui Chen, Zeyang Wang, Lihai Gong, Qixuan Wang, Wenyan Chen, Jia Wang, Xuelian Ma, Ruofan Ding, Xing Li, Xudong Zou, Mireya Plass, Cheng Lian, Ting Ni, Gong-Hong Wei, Weibo Xie, Lin Deng, Lei Li
A distinct class of pan-cancer susceptibility genes revealed by an alternative polyadenylation transcriptome-wide association study. Nature communications 15 (1) (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics 56 (5) (2024)
Yang Li, Yuanyuan Wang, Yue-Qiu Tan, Qiuling Yue, Yueshuai Guo, Ruoyu Yan, Lanlan Meng, Huicong Zhai, Lingxiu Tong, Zihan Yuan, Wu Li, Cuicui Wang, Shenglin Han, Sen Ren, Yitong Yan, Weixu Wang, Lei Gao, Chen Tan, Tongyao Hu, Hao Zhang, Liya Liu, Pinglan Yang, Wanyin Jiang, Yiting Ye, Huanhuan Tan, Yanfeng Wang, Chenyu Lu, Xin Li, Jie Xie, Gege Yuan, Yiqiang Cui, Bin Shen, Cheng Wang, Yichun Guan, Wei Li, Qinghua Shi, Ge Lin, Ting Ni, Zheng Sun, Lan Ye, Anastasios Vourekas, Xue-Jiang Guo, Mingyan Lin, Zheng Sun
The landscape of RNA-binding proteins in mammalian spermatogenesis. Science (New York, N.Y.) (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics 56 (5) (2024)
Zhaozhao Zhao, Yu Chen, Xudong Zou, Limin Lin, Xiaolan Zhou, Xiaomeng Cheng, Guangrui Yang, Qiushi Xu, Lihai Gong, Lei Li, Ting Ni
Pan-cancer transcriptome analysis reveals widespread regulation through alternative tandem transcription initiation. Science advances 10 (28) (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics 56 (5) (2024)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Talang Wang, Ruoyu Zhao, Junhong Zhi, Ziling Liu, Aiwei Wu, Zimei Yang, Weixu Wang, Ting Ni, Lili Jing, Ming Yu
Tox4 regulates transcriptional elongation and reinitiation during murine T cell development. Communications biology 6 (1) (2023)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Huanhuan Tan, Weixu Wang, Congjin Zhou, Yanfeng Wang, Shu Zhang, Pinglan Yang, Rui Guo, Wei Chen, Jinwen Zhang, Lan Ye, Yiqiang Cui, Ting Ni, Zheng Sun
Single-cell RNA-seq uncovers dynamic processes orchestrated by RNA-binding protein DDX43 in chromatin remodeling during spermiogenesis. Nature communications 14 (1) (2023)
Zhaozhao Zhao, Yu Chen, Xiaomeng Cheng, Leihuan Huang, Haimei Wen, Qiushi Xu, Xiaolan Zhou, Xiaoyang Zhang, Jing Chen, Ting Ni
The landscape of cryptic antisense transcription in human cancers reveals an oncogenic noncoding RNA in lung cancer. Science advances 9 (14) (2023)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Huanhuan Tan, Weixu Wang, Congjin Zhou, Yanfeng Wang, Shu Zhang, Pinglan Yang, Rui Guo, Wei Chen, Jinwen Zhang, Lan Ye, Yiqiang Cui, Ting Ni, Zheng Sun
Single-cell RNA-seq uncovers dynamic processes orchestrated by RNA-binding protein DDX43 in chromatin remodeling during spermiogenesis. Nature communications 14 (1) (2023)
Huanhuan Tan, Weixu Wang, Congjin Zhou, Yanfeng Wang, Shu Zhang, Pinglan Yang, Rui Guo, Wei Chen, Jinwen Zhang, Lan Ye, Yiqiang Cui, Ting Ni, Zheng Sun
Single-cell RNA-seq uncovers dynamic processes orchestrated by RNA-binding protein DDX43 in chromatin remodeling during spermiogenesis. Nature communications 14 (1) (2023)
Peng Yu, Shuai Song, Xiaokai Zhang, Shujun Cui, Gang Wei, Zihang Huang, Linqi Zeng, Ting Ni, Ai-Jun Sun
Downregulation of apoptotic repressor AVEN exacerbates cardiac injury after myocardial infarction. Proceedings of the National Academy of Sciences of the United States of America 120 (42) (2023)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Huanhuan Tan, Weixu Wang, Congjin Zhou, Yanfeng Wang, Shu Zhang, Pinglan Yang, Rui Guo, Wei Chen, Jinwen Zhang, Lan Ye, Yiqiang Cui, Ting Ni, Zheng Sun
Single-cell RNA-seq uncovers dynamic processes orchestrated by RNA-binding protein DDX43 in chromatin remodeling during spermiogenesis. Nature communications 14 (1) (2023)
Luyao Bao, Juan Hu, Bowen Zhan, Mingzhe Chi, Zhengyang Li, Sen Wang, Chan Shan, Zhaozhao Zhao, Yanchao Guo, Xiaoming Ding, Chaoneng Ji, Sheng-Ce Tao, Ting Ni, Xuelian Zhang, Guo-Ping Zhao, Jixi Li
Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism. Nature communications 14 (1) (2023)
Junliang Wang, Wei Chen, Wenjun Yue, Wenhong Hou, Feng Rao, Hanbing Zhong, Yuanming Qi, Ni Hong, Ting Ni, Wenfei Jin
Comprehensive mapping of alternative polyadenylation site usage and its dynamics at single-cell resolution. Proceedings of the National Academy of Sciences of the United States of America 119 (49) (2022)
Ting Shen, Ting Ni, Jiaxuan Chen, Haitao Chen, Xiaopin Ma, Guangwen Cao, Tianzhi Wu, Haisheng Xie, Bin Zhou, Gang Wei, Hexige Saiyin, Suqin Shen, Peng Yu, Qianyi Xiao, Hui Liu, Yuzheng Gao, Xidai Long, Jianhua Yin, Yanfang Guo, Jiaxue Wu, Gong-Hong Wei, Jinlin Hou, De-Ke Jiang
An enhancer variant at 16q22.1 predisposes to hepatocellular carcinoma via regulating PRMT7 expression. Nature communications 13 (1) (2022)
Zhengyuan Chen, Qi Jia, Zhaozhao Zhao, Qilin Zhang, Yu Chen, Nidan Qiao, Zhao Ye, Chenxing Ji, Yichao Zhang, Wenqiang He, Chengzhang Shi, Yixin Cai, Boyuan Yao, Rui Han, Ye Wang, Xuefei Shou, Ming Shen, Xiaoyun Cao, Xiang Zhou, Haixia Cheng, Jingjing Zhu, Yao Hu, Zhaoyun Zhang, Hongying Ye, Yiming Li, Shiqi Li, Yongfei Wang, Zengyi Ma, Ting Ni, Yao Zhao
Transcription Factor ASCL1 Acts as a Novel Potential Therapeutic Target for the Treatment of the Cushing's Disease. The Journal of clinical endocrinology and metabolism 107 (8) (2022)
Xuelian Ma, Shumin Cheng, Ruofan Ding, Zhaozhao Zhao, Xudong Zou, Shouhong Guang, Qixuan Wang, Huan Jing, Chen Yu, Ting Ni, Lei Li
ipaQTL-atlas: an atlas of intronic polyadenylation quantitative trait loci across human tissues. Nucleic acids research (2022)
Meng Chen, Ran Wei, Gang Wei, Mingqing Xu, Zhixi Su, Chen Zhao, Ting Ni
Systematic evaluation of the effect of polyadenylation signal variants on the expression of disease-associated genes. Genome research 31 (5) (2021)
Qi Jia, Baiyun Xie, Zhaozhao Zhao, Leihuan Huang, Gang Wei, Ting Ni
Lung cancer cells expressing a shortened CDK16 3'UTR escape senescence through impaired miR-485-5p targeting. Molecular oncology (2021)
Weixu Wang, Huanhuan Tan, Mingwan Sun, Yiqing Han, Wei Chen, Shengnu Qiu, Zheng Sun, Gang Wei, Ting Ni
Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch integration. Nucleic acids research 49 (9) (2021)
Zhaozhao Zhao, Qiushi Xu, Ran Wei, Leihuan Huang, Weixu Wang, Gang Wei, Ting Ni
Comprehensive characterization of somatic variants associated with intronic polyadenylation in human cancers. Nucleic acids research 49 (18) (2021)
Zhaozhao Zhao, Qiushi Xu, Ran Wei, Weixu Wang, Dong Ding, Yu Yang, Jun Yao, Liye Zhang, Yue-Qing Hu, Gang Wei, Ting Ni
Cancer-associated dynamics and potential regulators of intronic polyadenylation revealed by IPAFinder using standard RNA-seq data. Genome research 31 (11) (2021)
Jun Yao, Dong Ding, Xueping Li, Ting Shen, Haihui Fu, Hua Zhong, Gang Wei, Ting Ni
Prevalent intron retention fine-tunes gene expression and contributes to cellular senescence. Aging cell 19 (12) (2020)
Di Yang, Gang Wei, Fen Long, Hongbo Nie, Xiao-Li Tian, Lefeng Qu, ShuangXi Wang, Peng Li, Yue Qiu, Yang Wang, Wanjin Hong, Ting Ni, Xinhua Liu, Yi Zhun Zhu
Histone methyltransferase Smyd3 is a new regulator for vascular senescence. Aging cell 19 (9) (2020)
Meng Chen, Guoliang Lyu, Miao Han, Hongbo Nie, Ting Shen, Wei Chen, Yichi Niu, Yifan Song, Xueping Li, Huan Li, Xinyu Chen, Ziyue Wang, Zheng Xia, Wei Li, Xiao-Li Tian, Chen Ding, Jun Gu, Yufang Zheng, Xinhua Liu, Jinfeng Hu, Gang Wei, Wei Tao, Ting Ni
3' UTR lengthening as a novel mechanism in regulating cellular senescence. Genome research (2018)
Gang Wei, Kunpeng Liu, Ting Shen, Jinlei Shi, Bing Liu, Miao Han, Maolin Peng, Haihui Fu, Yifan Song, Jun Zhu, Aiwu Dong, Ting Ni
Position-specific intron retention is mediated by the histone methyltransferase SDG725. BMC biology 16 (1) (2018)
Yifang Xie, Daqi Wang, Feng Lan, Gang Wei, Ting Ni, Renjie Chai, Dong Liu, Shijun Hu, Mingqing Li, Dajin Li, Hongyan Wang, Yongming Wang
Author Correction: An episomal vector-based CRISPR/Cas9 system for highly efficient gene knockout in human pluripotent stem cells. Scientific reports 8 (1) (2018)
Ting Shen, Huan Li, Yifan Song, Jun Yao, Miao Han, Ming Yu, Gang Wei, Ting Ni
Antisense transcription regulates the expression of sense gene via alternative polyadenylation. Protein & cell 9 (6) (2017)
Yifang Xie, Daqi Wang, Feng Lan, Gang Wei, Ting Ni, Renjie Chai, Dong Liu, Shijun Hu, Mingqing Li, Dajin Li, Hongyan Wang, Yongming Wang
An episomal vector-based CRISPR/Cas9 system for highly efficient gene knockout in human pluripotent stem cells. Scientific reports 7 (1) (2017)