Le-Ming Shi (Leming Shi)

ORCID

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 24

Top Venues

Nature communications

Nature biotechnology

Nature genetics

Nature cancer

This page only lists publications with an associated author ORCID identifier.

Publications

Duo Wang, Ya-Qing Liu, Yuanfeng Zhang, Qingwang Chen, Yanxi Han, Wanwan Hou, Cong Liu, Ying Yu, Ziyang Li, Ziqiang Li, Jiaxin Zhao, Le-Ming Shi, Yuanting Zheng, Jinming Li, Rui Zhang
A real-world multi-center RNA-seq benchmarking study using the Quartet and MAQC reference materials. Nature communications 15 (1) (2024)
Duo Wang, Ya-Qing Liu, Yuanfeng Zhang, Qingwang Chen, Yanxi Han, Wanwan Hou, Cong Liu, Ying Yu, Ziyang Li, Ziqiang Li, Jiaxin Zhao, Le-Ming Shi, Yuanting Zheng, Jinming Li, Rui Zhang
A real-world multi-center RNA-seq benchmarking study using the Quartet and MAQC reference materials. Nature communications 15 (1) (2024)
Yi-Zhou Jiang, Ding Ma, Xi Jin, Yi Xiao, Ying Yu, Jinxiu Shi, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Ya-Qing Liu, Qing-Wang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M Shah, Ting Wang, Tiannan Guo, Le-Ming Shi, Charles M Perou, Yuanting Zheng, Wei Huang, Zhi-Ming Shao
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities. Nature cancer 5 (4) (2024)
Duo Wang, Ya-Qing Liu, Yuanfeng Zhang, Qingwang Chen, Yanxi Han, Wanwan Hou, Cong Liu, Ying Yu, Ziyang Li, Ziqiang Li, Jiaxin Zhao, Le-Ming Shi, Yuanting Zheng, Jinming Li, Rui Zhang
A real-world multi-center RNA-seq benchmarking study using the Quartet and MAQC reference materials. Nature communications 15 (1) (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics 56 (5) (2024)
Yi-Zhou Jiang, Ding Ma, Xi Jin, Yi Xiao, Ying Yu, Jinxiu Shi, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Ya-Qing Liu, Qing-Wang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M Shah, Ting Wang, Tiannan Guo, Le-Ming Shi, Charles M Perou, Yuanting Zheng, Wei Huang, Zhi-Ming Shao
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities. Nature cancer 5 (4) (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics 56 (5) (2024)
Yi-Zhou Jiang, Ding Ma, Xi Jin, Yi Xiao, Ying Yu, Jinxiu Shi, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Ya-Qing Liu, Qing-Wang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M Shah, Ting Wang, Tiannan Guo, Le-Ming Shi, Charles M Perou, Yuanting Zheng, Wei Huang, Zhi-Ming Shao
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities. Nature cancer (2024)
Qianqian Peng, Xinxuan Liu, Wenran Li, Han Jing, Jiarui Li, Xingjian Gao, Qi Luo, Charles E Breeze, Siyu Pan, Qiwen Zheng, Guochao Li, Jiaqiang Qian, Liyun Yuan, Na Yuan, Chenglong You, Siyuan Du, Yuanting Zheng, Ziyu Yuan, Jingze Tan, Peilin Jia, Jiucun Wang, Guoqing Zhang, Xianping Lu, Le-Ming Shi, Shicheng Guo, Yun Liu, Ting Ni, Bo Wen, Changqing Zeng, Li Jin, Andrew E Teschendorff, Fan Liu, Si-Jia Wang
Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits. Nature genetics 56 (5) (2024)
Duo Wang, Ya-Qing Liu, Yuanfeng Zhang, Qingwang Chen, Yanxi Han, Wanwan Hou, Cong Liu, Ying Yu, Ziyang Li, Ziqiang Li, Jiaxin Zhao, Le-Ming Shi, Yuanting Zheng, Jinming Li, Rui Zhang
A real-world multi-center RNA-seq benchmarking study using the Quartet and MAQC reference materials. Nature communications 15 (1) (2024)
Boshu Ouyang, Caihua Shan, Shun Shen, Xinnan Dai, Qingwang Chen, Xiaomin Su, Yongbin Cao, Xifeng Qin, Ying He, Siyu Wang, Ruizhe Xu, Ruining Hu, Le-Ming Shi, Tun Lu, Wuli Yang, Shaojun Peng, Jun Zhang, Jianxin Wang, Dongsheng Li, Zhiqing Pang
AI-powered omics-based drug pair discovery for pyroptosis therapy targeting triple-negative breast cancer. Nature communications 15 (1) (2024)
Chengdong Zhang, Yuan Yang, Tao Qi, Yuening Zhang, Linghui Hou, Jingjing Wei, Jingcheng Yang, Le-Ming Shi, Sang-Ging Ong, Hongyan Wang, Hui Wang, Bo Yu, Yongming Wang
Prediction of base editor off-targets by deep learning. Nature communications 14 (1) (2023)
Qing-Wang Chen, Xiaorou Guo, Haiyan Wang, Shanyue Sun, He Jiang, Peipei Zhang, Erfei Shang, Ruolan Zhang, Zehui Cao, Quanne Niu, Chao Zhang, Ya-Qing Liu, Le-Ming Shi, Ying Yu, Wanwan Hou, Yuanting Zheng
Plasma-Free Blood as a Potential Alternative to Whole Blood for Transcriptomic Analysis. Phenomics (Cham, Switzerland) 4 (2) (2023)
Yuanting Zheng, Ya-Qing Liu, Jingcheng Yang, Lianhua Dong, Rui Zhang, Sha Tian, Ying Yu, Luyao Ren, Wanwan Hou, Feng Zhu, Yuanbang Mai, Jinxiong Han, Lijun Zhang, Hui Jiang, Ling Lin, Jingwei Lou, Ruiqiang Li, Jingchao Lin, Huafen Liu, Ziqing Kong, Depeng Wang, Fangping Dai, Ding Bao, Zehui Cao, Qiaochu Chen, Qing-Wang Chen, Xingdong Chen, Yuechen Gao, He Jiang, Bin Li, Bingying Li, Jing-Jing Li, Ruimei Liu, Tao Qing, Erfei Shang, Jun Shang, Shanyue Sun, Haiyan Wang, Xiaolin Wang, Naixin Zhang, Peipei Zhang, Ruolan Zhang, Sibo Zhu, Andreas Scherer, Jiucun Wang, Jing Wang, Yinbo Huo, Gang Liu, Chengming Cao, Li Shao, Joshua Xu, Huixiao Hong, Wenming Xiao, Xiaozhen Liang, Daru Lu, Li Jin, Weida Tong, Chen Ding, Jinming Li, Xiang Fang, Le-Ming Shi
Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials. Nature biotechnology (2023)
Xi Jin, Yi-Fan Zhou, Ding Ma, Shen Zhao, Cai-Jin Lin, Yi Xiao, Tong Fu, Cheng-Lin Liu, Yi-Yu Chen, Wen-Xuan Xiao, Ya-Qing Liu, Qing-Wang Chen, Ying Yu, Le-Ming Shi, Jin-Xiu Shi, Wei Huang, John F R Robertson, Yi-Zhou Jiang, Zhi-Ming Shao
Molecular classification of hormone receptor-positive HER2-negative breast cancer. Nature genetics (2023)
Qing-Wang Chen, Xiaorou Guo, Haiyan Wang, Shanyue Sun, He Jiang, Peipei Zhang, Erfei Shang, Ruolan Zhang, Zehui Cao, Quanne Niu, Chao Zhang, Ya-Qing Liu, Le-Ming Shi, Ying Yu, Wanwan Hou, Yuanting Zheng
Plasma-Free Blood as a Potential Alternative to Whole Blood for Transcriptomic Analysis. Phenomics (Cham, Switzerland) 4 (2) (2023)
Ying Yu, Wanwan Hou, Ya-Qing Liu, Haiyan Wang, Lianhua Dong, Yuanbang Mai, Qing-Wang Chen, Zhihui Li, Shanyue Sun, Jingcheng Yang, Zehui Cao, Peipei Zhang, Yi Zi, Ruimei Liu, Jian Gao, Naixin Zhang, Jing-Jing Li, Luyao Ren, He Jiang, Jun Shang, Sibo Zhu, Xiaolin Wang, Tao Qing, Ding Bao, Bingying Li, Bin Li, Chen Suo, Yan Pi, Xia Wang, Fangping Dai, Andreas Scherer, Pirkko Mattila, Jinxiong Han, Lijun Zhang, Hui Jiang, Danielle Thierry-Mieg, Jean Thierry-Mieg, Wenming Xiao, Huixiao Hong, Weida Tong, Jing Wang, Jinming Li, Xiang Fang, Li Jin, Joshua Xu, Feng Qian, Rui Zhang, Le-Ming Shi, Yuanting Zheng
Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling. Nature biotechnology (2023)
Ying Yu, Wanwan Hou, Ya-Qing Liu, Haiyan Wang, Lianhua Dong, Yuanbang Mai, Qing-Wang Chen, Zhihui Li, Shanyue Sun, Jingcheng Yang, Zehui Cao, Peipei Zhang, Yi Zi, Ruimei Liu, Jian Gao, Naixin Zhang, Jing-Jing Li, Luyao Ren, He Jiang, Jun Shang, Sibo Zhu, Xiaolin Wang, Tao Qing, Ding Bao, Bingying Li, Bin Li, Chen Suo, Yan Pi, Xia Wang, Fangping Dai, Andreas Scherer, Pirkko Mattila, Jinxiong Han, Lijun Zhang, Hui Jiang, Danielle Thierry-Mieg, Jean Thierry-Mieg, Wenming Xiao, Huixiao Hong, Weida Tong, Jing Wang, Jinming Li, Xiang Fang, Li Jin, Joshua Xu, Feng Qian, Rui Zhang, Le-Ming Shi, Yuanting Zheng
Author Correction: Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling. Nature biotechnology (2023)
Xintong Yao, Shanyue Sun, Yi Zi, Yaqing Liu, Jingcheng Yang, Luyao Ren, Guangchun Chen, Zehui Cao, Wanwan Hou, Yueqiang Song, Jun Shang, He Jiang, Zhihui Li, Haiyan Wang, Peipei Zhang, Le-Ming Shi, Quan-Zhen Li, Ying Yu, Yuanting Zheng
Comprehensive microRNA-seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats. Scientific data 9 (1) (2022)
Qing-Wang Chen, Ya-Qing Liu, Yuechen Gao, Ruolan Zhang, Wanwan Hou, Zehui Cao, Yi-Zhou Jiang, Yuanting Zheng, Le-Ming Shi, Ding Ma, Jingcheng Yang, Zhi-Ming Shao, Ying Yu
A comprehensive genomic and transcriptomic dataset of triple-negative breast cancers. Scientific data 9 (1) (2022)
Wenming Xiao, Luyao Ren, Zhong Chen, Li Tai Fang, Yongmei Zhao, Justin Lack, Meijian Guan, Bin Zhu, Erich Jaeger, Liz Kerrigan, Thomas M Blomquist, Tiffany Hung, Marc Sultan, Kenneth Idler, Charles Lu, Andreas Scherer, Rebecca Kusko, Malcolm Moos, Chunlin Xiao, Stephen T Sherry, Ogan D Abaan, Wanqiu Chen, Xin Chen, Jessica Nordlund, Ulrika Liljedahl, Roberta Maestro, Maurizio Polano, Jiri Drabek, Petr Vojta, Sulev Kõks, Ene Reimann, Bindu Swapna Madala, Timothy R Mercer, Chris Miller, Howard Jacob, Tiffany Truong, Ali Moshrefi, Aparna Natarajan, Ana Granat, Gary P Schroth, Rasika Kalamegham, Eric Peters, Virginie Petitjean, Ashley Walton, Tsai-Wei Shen, Keyur Talsania, Cristobal Juan Vera, Kurt Langenbach, Maryellen de Mars, Jennifer A Hipp, James C Willey, Jing Wang, Jyoti Shetty, Yuliya Kriga, Arati Raziuddin, Bao Tran, Yuanting Zheng, Ying Yu, Margaret Cam, Parthav Jailwala, Cu Nguyen, Daoud Meerzaman, Qingrong Chen, Chunhua Yan, Ben Ernest, Urvashi Mehra, Roderick V Jensen, Wendell D Jones, Jian-Liang Li, Brian N Papas, Mehdi Pirooznia, Yun-Ching Chen, Fayaz T Seifuddin, Zhipan Li, Xuelu Liu, Wolfgang Resch, Jingya Wang, Leihong Wu, Gokhan Yavas, Corey Miles, Baitang Ning, Weida Tong, Christopher E Mason, Eric Donaldson, Samir Lababidi, Louis M Staudt, Zivana Tezak, Huixiao Hong, Charles Wang, Le-Ming Shi
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing. Nature biotechnology 39 (9) (2021)
Li Tai Fang, Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhao-Wei Yang, Liz Kerrigan, Kurt Langenbach, Maryellen de Mars, Charles Lu, Kenneth Idler, Howard Jacob, Yuanting Zheng, Luyao Ren, Ying Yu, Erich Jaeger, Gary P Schroth, Ogan D Abaan, Keyur Talsania, Justin Lack, Tsai-Wei Shen, Zhong Chen, Seta Stanbouly, Bao Tran, Jyoti Shetty, Yuliya Kriga, Daoud Meerzaman, Cu Nguyen, Virginie Petitjean, Marc Sultan, Margaret Cam, Monika Mehta, Tiffany Hung, Eric Peters, Rasika Kalamegham, Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Yunfei Guo, Lijing Yao, Lei Song, Hugo Y K Lam, Jiri Drabek, Petr Vojta, Roberta Maestro, Daniela Gasparotto, Sulev Kõks, Ene Reimann, Andreas Scherer, Jessica Nordlund, Ulrika Liljedahl, Roderick V Jensen, Mehdi Pirooznia, Zhipan Li, Chunlin Xiao, Stephen T Sherry, Rebecca Kusko, Malcolm Moos, Eric Donaldson, Zivana Tezak, Baitang Ning, Weida Tong, Jing Li, Penelope Duerken-Hughes, Claudia Catalanotti, Shamoni Maheshwari, Joe Shuga, Winnie S Liang, Jonathan J Keats, Jonathan Adkins, Erica Tassone, Victoria Zismann, Timothy McDaniel, Jeffery M Trent, Jonathan Foox, Daniel Butler, Christopher E Mason, Huixiao Hong, Le-Ming Shi, Charles Wang, Wenming Xiao, null null
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nature biotechnology 39 (9) (2021)
Yuanting Zheng, Bingying Li, Dejing Pan, Jun Cao, Jian Zhang, Xiaolin Wang, Xiangnan Li, Wanwan Hou, Ding Bao, Luyao Ren, Jingcheng Yang, Shangzi Wang, Yangyang Qiu, Fei Zhou, Zhiwei Liu, Sibo Zhu, Lei Zhang, Tao Qing, Yi Wang, Ying Yu, Jiaxue Wu, Xichun Hu, Le-Ming Shi
Functional consequences of a rare missense BARD1 c.403G>A germline mutation identified in a triple-negative breast cancer patient. Breast cancer research : BCR 23 (1) (2021)

Le-Ming Shi.css-eqlu8i{font-size:small;padding-left:4px;} (Leming Shi)

Publication Activity (10 Years)

Top Topics

Top Venues

Le-Ming Shi (Leming Shi)