Tomi Suomi

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 15

Top Venues

Nature communications

Journal of proteome research

ISME communications

PLoS computational biology

University of Turku (BSC)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Turku

Finland

BSC :: Department of Information Technology

University of Turku

Finland

MSC :: Department of Information Technology

Publications

Inna Starskaia, Milla Valta, Sami Pietilä, Tomi Suomi, Sirpa Pahkuri, Ubaid Ullah Kalim, Omid Rasool, Emilie Rydgren, Heikki Hyöty, Olli H Laitinen, Riitta Veijola, Jorma Ilonen, Jorma Toppari, Johanna Lempainen, Laura L Elo, Riitta Lahesmaa
Distinct cellular immune responses in children en route to type 1 diabetes with different first-appearing autoantibodies. Nature communications 15 (1) (2024)
Hanna Heikelä, Laura Mairinoja, Suvi T Ruohonen, Kalle T Rytkönen, Simone de Brot, Asta Laiho, Satu Koskinen, Tomi Suomi, Laura L Elo, Leena Strauss, Matti Poutanen
Disruption of HSD17B12 in mouse hepatocytes leads to reduced body weight and defect in the lipid droplet expansion associated with microvesicular steatosis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 38 (17) (2024)
Inna Starskaia, Milla Valta, Sami Pietilä, Tomi Suomi, Sirpa Pahkuri, Ubaid Ullah Kalim, Omid Rasool, Emilie Rydgren, Heikki Hyöty, Olli H Laitinen, Riitta Veijola, Jorma Ilonen, Jorma Toppari, Johanna Lempainen, Laura L Elo, Riitta Lahesmaa
Distinct cellular immune responses in children en route to type 1 diabetes with different first-appearing autoantibodies. Nature communications 15 (1) (2024)
Inna Starskaia, Milla Valta, Sami Pietilä, Tomi Suomi, Sirpa Pahkuri, Ubaid Ullah Kalim, Omid Rasool, Emilie Rydgren, Heikki Hyöty, Olli H Laitinen, Riitta Veijola, Jorma Ilonen, Jorma Toppari, Johanna Lempainen, Laura L Elo, Riitta Lahesmaa
Distinct cellular immune responses in children en route to type 1 diabetes with different first-appearing autoantibodies. Nature communications 15 (1) (2024)
Robert Moulder, Tommi Välikangas, M Karoliina Hirvonen, Tomi Suomi, Caroline A Brorsson, Niina Lietzén, Sylvaine F A Bruggraber, Lut Overbergh, Professor David Dunger, Mark Peakman, Piotr J Chmura, Soren Brunak, Anke M Schulte, Chantal Mathieu, Olli H Laitinen, Laura L Elo, Riitta Lahesmaa, null null
Targeted serum proteomics of longitudinal samples from newly diagnosed youth with type 1 diabetes distinguishes markers of disease and C-peptide trajectory. Diabetologia (2023)
Tommi Välikangas, Tomi Suomi, Courtney E Chandler, Alison J Scott, Bao Q Tran, Robert K Ernst, David R Goodlett, Laura L Elo
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach. Nature communications 13 (1) (2022)
Tommi Välikangas, Tomi Suomi, Courtney E Chandler, Alison J Scott, Bao Q Tran, Robert K Ernst, David R Goodlett, Laura L Elo
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach. Nature communications 13 (1) (2022)
Tommi Välikangas, Tomi Suomi, Courtney E Chandler, Alison J Scott, Bao Q Tran, Robert K Ernst, David R Goodlett, Laura L Elo
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach. Nature communications 13 (1) (2022)
Sami Pietilä, Tomi Suomi, Laura L Elo
Introducing untargeted data-independent acquisition for metaproteomics of complex microbial samples. ISME communications 2 (1) (2022)
Tommi Välikangas, Tomi Suomi, Courtney E Chandler, Alison J Scott, Bao Q Tran, Robert K Ernst, David R Goodlett, Laura L Elo
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach. Nature communications 13 (1) (2022)
Tommi Välikangas, Tomi Suomi, Courtney E Chandler, Alison J Scott, Bao Q Tran, Robert K Ernst, David R Goodlett, Laura L Elo
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach. Nature communications 13 (1) (2022)
Ye Hong, Dani Flinkman, Tomi Suomi, Sami Pietilä, Peter James, Eleanor Coffey, Laura L Elo
PhosPiR: an automated phosphoproteomic pipeline in R. Briefings in bioinformatics (2021)
Pauliina M Munne, Lahja Martikainen, Iiris Räty, Kia Bertula, Nonappa Nonappa, Janika Ruuska, Hanna Ala-Hongisto, Aino Peura, Babette Hollmann, Liliya Euro, Kerim Yavuz, Linda Patrikainen, Maria Salmela, Juho Pokki, Mikko Kivento, Juho Väänänen, Tomi Suomi, Liina Nevalaita, Minna Mutka, Panu E Kovanen, Marjut Leidenius, Tuomo Meretoja, Katja Hukkinen, Outi Monni, Jeroen Pouwels, Biswajyoti Sahu, Johanna Mattson, Heikki Joensuu, Päivi Heikkilä, Laura L Elo, Ciara Metcalfe, Melissa R Junttila, Olli Ikkala, Juha Klefström
Compressive stress-mediated p38 activation required for ERα + phenotype in breast cancer. Nature communications 12 (1) (2021)
Juhani Aakko, Sami Pietilä, Tomi Suomi, Mehrad Mahmoudian, Raine Toivonen, Petri Kouvonen, Anne Rokka, Arno Hänninen, Laura L Elo
Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis. Journal of proteome research 19 (1) (2019)
Tomi Suomi, Fatemeh Seyednasrollah, Maria K Jaakkola, Thomas Faux, Laura L Elo
ROTS: An R package for reproducibility-optimized statistical testing. PLoS computational biology 13 (5) (2017)

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Publication Activity (10 Years)

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Tomi Suomi