Vsevolod J Makeev (Vsevolod Y Makeev, Vsevolod Makeev, Makeev Vsevolod)

ResearcherID Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Venues

BMC bioinformatics

Nature communications

Nucleic acids research

PloS one

Vavilov Institute of General Genetics, Russan Academy of Sciences

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Vavilov Institute of General Genetics, Russan Academy of Sciences Dec 10 2009

Russia

Head of the Department :: Computational Systems Biology

Publications

Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod J Makeev, Evgeny Karpulevich
Correction: Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod J Makeev, Evgeny Karpulevich
Correction: Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod J Makeev, Evgeny Karpulevich
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Guguchkin Egor, Kasianov Artem, Belenikin Maksim, Zobkova Gaukhar, Kosova Ekaterina, Vsevolod J Makeev, Karpulevich Evgeny
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Guguchkin Egor, Kasianov Artem, Belenikin Maksim, Zobkova Gaukhar, Kosova Ekaterina, Vsevolod J Makeev, Karpulevich Evgeny
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A Ramilowski, Andrey I Sigorskikh, Lisa J Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M Hoffman, Chikashi C Terao, Ivan V Kulakovskiy, Takeya Kasukawa, Jay W Shin, Piero Carninci, Michiel J L de Hoon
Annotation of nuclear lncRNAs based on chromatin interactions. PloS one 19 (5) (2024)
Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod J Makeev, Evgeny Karpulevich
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Guguchkin Egor, Kasianov Artem, Belenikin Maksim, Zobkova Gaukhar, Kosova Ekaterina, Vsevolod J Makeev, Karpulevich Evgeny
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod J Makeev, Evgeny Karpulevich
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A Ramilowski, Andrey I Sigorskikh, Lisa J Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M Hoffman, Chikashi C Terao, Ivan V Kulakovskiy, Takeya Kasukawa, Jay W Shin, Piero Carninci, Michiel J L de Hoon
Annotation of nuclear lncRNAs based on chromatin interactions. PloS one 19 (5) (2024)
Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod J Makeev, Evgeny Karpulevich
Correction: Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index. BMC bioinformatics 25 (1) (2024)
Tatiana Subkhankulova, Karen Camargo-Sosa, Leonid A Uroshlev, Masataka Nikaido, Noah Shriever, Artem S Kasianov, Xueyan Yang, Frederico S L M Rodrigues, Thomas James Carney, Gemma Bavister, Hartmut Schwetlick, Jonathan H P Dawes, Andrea Rocco, Vsevolod J Makeev, Robert N Kelsh
Zebrafish pigment cells develop directly from persistent highly multipotent progenitors. Nature communications 14 (1) (2023)
Tatiana Subkhankulova, Karen Camargo-Sosa, Leonid A Uroshlev, Masataka Nikaido, Noah Shriever, Artem S Kasianov, Xueyan Yang, Frederico S L M Rodrigues, Thomas James Carney, Gemma Bavister, Hartmut Schwetlick, Jonathan H P Dawes, Andrea Rocco, Vsevolod J Makeev, Robert N Kelsh
Zebrafish pigment cells develop directly from persistent highly multipotent progenitors. Nature communications 14 (1) (2023)
Ilya E Vorontsov, Irina A Eliseeva, Arsenii Zinkevich, Mikhail Nikonov, Sergey Abramov, Alexandr Boytsov, Vasily Kamenets, Alexandra Kasianova, Semyon Kolmykov, Ivan S Yevshin, Alexander Favorov, Yulia A Medvedeva, Arttu Jolma, Fedor Kolpakov, Vsevolod J Makeev, Ivan V Kulakovskiy
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors. Nucleic acids research (2023)
Tatiana Subkhankulova, Karen Camargo-Sosa, Leonid A Uroshlev, Masataka Nikaido, Noah Shriever, Artem S Kasianov, Xueyan Yang, Frederico S L M Rodrigues, Thomas James Carney, Gemma Bavister, Hartmut Schwetlick, Jonathan H P Dawes, Andrea Rocco, Vsevolod J Makeev, Robert N Kelsh
Zebrafish pigment cells develop directly from persistent highly multipotent progenitors. Nature communications 14 (1) (2023)
Alexandr Boytsov, Sergey Abramov, Ariuna Z Aiusheeva, Alexandra M Kasianova, Eugene F Baulin, Ivan A Kuznetsov, Yurii S Aulchenko, Semyon K Kolmykov, Ivan Yevshin, Fedor Kolpakov, Ilya E Vorontsov, Vsevolod J Makeev, Ivan V Kulakovskiy
ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs. Nucleic acids research (2022)
Alina G Mikhailova, Alina A Mikhailova, Kristina Ushakova, Evgenii O Tretiakov, Dmitrii Iliushchenko, Victor Shamansky, Valeria Lobanova, Ivan Kozenkov, Bogdan Efimenko, Andrey A Yurchenko, Elena Kozenkova, Evgeny M Zdobnov, Vsevolod J Makeev, Valerian Yurov, Masashi Tanaka, Irina Gostimskaya, Zoe Fleischmann, Sofia Annis, Melissa Franco, Kevin Wasko, Stepan Denisov, Wolfram S Kunz, Dmitry Knorre, Ilya Mazunin, Sergey Nikolaev, Jacques Fellay, Alexandre Reymond, Konstantin Khrapko, Konstantin Gunbin, Konstantin Popadin
A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand. Nucleic acids research 50 (18) (2022)
Sergey Abramov, Alexandr Boytsov, Daria Bykova, Dmitry D Penzar, Ivan Yevshin, Semyon K Kolmykov, Marina V Fridman, Alexander V Favorov, Ilya E Vorontsov, Eugene F Baulin, Fedor Kolpakov, Vsevolod J Makeev, Ivan V Kulakovskiy
Landscape of allele-specific transcription factor binding in the human genome. Nature communications 12 (1) (2021)
Nickolai A Tchurikov, Leonid A Uroshlev, Elena S Klushevskaya, Ildar R Alembekov, Maria A Lagarkova, Galina I Kravatskaya, Vsevolod J Makeev, Yuri V Kravatsky
Chromosomal Translocations in NK-Cell Lymphomas Originate from Inter-Chromosomal Contacts of Active rDNA Clusters Possessing Hot Spots of DSBs. Cancers 13 (15) (2021)
Robert N Kelsh, Karen Camargo-Sosa, Saeed Farjami, Vsevolod J Makeev, Jonathan H P Dawes, Andrea Rocco
Cyclical fate restriction: a new view of neural crest cell fate specification. Development (Cambridge, England) 148 (22) (2021)
Alexander N Orekhov, Vasily Nikolaevich Sukhorukov, Nikita G Nikiforov, Marina V Kubekina, Igor A Sobenin, Kathy K Foxx, Sergey Pintus, Philip Stegmaier, Daria Stelmashenko, Alexander Kel, Anastasia V Poznyak, Wei-Kai Wu, Artem S Kasianov, Vsevolod J Makeev, Ichiro Manabe, Yumiko Oishi
Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First? International journal of molecular sciences 21 (8) (2020)
Ksenia M Klimina, Artem S Kasianov, Elena U Poluektova, Kirill V Emelyanov, Viktoriya N Voroshilova, Natalia V Zakharevich, Anna V Kudryavtseva, Vsevolod J Makeev, Valery N Danilenko
Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes. PeerJ 7 (2019)
Ilya E Vorontsov, Alla D Fedorova, Ivan S Yevshin, Ruslan N Sharipov, Fedor A Kolpakov, Vsevolod J Makeev, Ivan V Kulakovskiy
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data. BMC research notes 11 (1) (2018)
Derek de Rie, Imad Abugessaisa, Tanvir Alam, Erik Arner, Peter Arner, Haitham Ashoor, Gaby Åström, Magda Babina, Nicolas Bertin, A Maxwell Burroughs, Ailsa J Carlisle, Carsten O Daub, Michael Detmar, Ruslan Deviatiiarov, Alexandre Fort, Claudia Gebhard, Daniel Goldowitz, Sven Guhl, Thomas J Ha, Jayson Harshbarger, Akira Hasegawa, Kosuke Hashimoto, Meenhard Herlyn, Peter Heutink, Kelly J Hitchens, Chung-Chau Hon, Edward Huang, Yuri Ishizu, Chieko Kai, Takeya Kasukawa, Peter Klinken, Timo Lassmann, Charles-Henri Lecellier, Weonju Lee, Marina Lizio, Vsevolod J Makeev, Anthony Mathelier, Yulia A Medvedeva, Niklas Mejhert, Christopher J Mungall, Shohei Noma, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Helena Persson, Patrizia Rizzu, Filip Roudnicky, Pål Saetrom, Hiroki Sato, Jessica Severin, Jay W Shin, Rolf K Swoboda, Hiroshi Tarui, Hiroo Toyoda, Kristoffer Vitting-Seerup, Louise Winteringham, Yoko Yamaguchi, Kayoko Yasuzawa, Misako Yoneda, Noriko Yumoto, Susan Zabierowski, Peter G Zhang, Christine A Wells, Kim M Summers, Hideya Kawaji, Albin Sandelin, Michael Rehli, null null, Yoshihide Hayashizaki, Piero Carnici, Alistair R R Forrest, Michiel J L de Hoon
An integrated expression atlas of miRNAs and their promoters in human and mouse. Nature biotechnology 35 (9) (2017)

Vsevolod J Makeev.css-eqlu8i{font-size:small;padding-left:4px;} (Vsevolod Y Makeev, Vsevolod Makeev, Makeev Vsevolod)

Publication Activity (10 Years)

Top Topics

Top Venues

Vsevolod J Makeev (Vsevolod Y Makeev, Vsevolod Makeev, Makeev Vsevolod)