Wen-Feng Zeng

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 17

Top Topics

Mass Spectrometry

Gas Chromatography

Top Venues

Nature communications

Journal of proteome research

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Maximillian T Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Patricia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems, Matthias Mann
AlphaPept: a modern and open framework for MS-based proteomics. Nature communications 15 (1) (2024)
Maximillian T Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Patricia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems, Matthias Mann
AlphaPept: a modern and open framework for MS-based proteomics. Nature communications 15 (1) (2024)
Maximillian T Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Patricia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems, Matthias Mann
AlphaPept: a modern and open framework for MS-based proteomics. Nature communications 15 (1) (2024)
Wen-Feng Zeng, Guoquan Yan, Huan-Huan Zhao, Chao Liu, Wei-Qian Cao
Uncovering missing glycans and unexpected fragments with pGlycoNovo for site-specific glycosylation analysis across species. Nature communications 15 (1) (2024)
Maximillian T Strauss, Isabell Bludau, Wen-Feng Zeng, Eugenia Voytik, Constantin Ammar, Julia Patricia Schessner, Rajesh Ilango, Michelle Gill, Florian Meier, Sander Willems, Matthias Mann
AlphaPept: a modern and open framework for MS-based proteomics. Nature communications 15 (1) (2024)
Marvin Thielert, Ericka Cm Itang, Constantin Ammar, Florian A Schober, Isabell Bludau, Lisa Schweizer, Thierry M Nordmann, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Mitchell Paul Levesque, Fabian Joachim Theis, Martin Steger, Matthias Mann
Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Molecular systems biology (2023)
Lisa Schweizer, Tina Schaller, Maximilian Zwiebel, Özge Karayel, Johannes Bruno Müller-Reif, Wen-Feng Zeng, Sebastian Dintner, Thierry M Nordmann, Klaus Hirschbühl, Bruno Märkl, Rainer Claus, Matthias Mann
Quantitative multiorgan proteomics of fatal COVID-19 uncovers tissue-specific effects beyond inflammation. EMBO molecular medicine (2023)
Wen-Feng Zeng, Xie-Xuan Zhou, Sander Willems, Constantin Ammar, Maria Wahle, Isabell Bludau, Eugenia Voytik, Maximillian T Strauss, Matthias Mann
AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics. Nature communications 13 (1) (2022)
Siyuan Kong, Pengyun Gong, Wen-Feng Zeng, Biyun Jiang, Xinhang Hou, Yang Zhang, Huanhuan Zhao, Mingqi Liu, Guoquan Yan, Xinwen Zhou, Xihua Qiao, Mengxi Wu, Peng-Yuan Yang, Chao Liu, Wei-Qian Cao
pGlycoQuant with a deep residual network for quantitative glycoproteomics at intact glycopeptide level. Nature communications 13 (1) (2022)
Zhen-Lin Chen, Peng-Zhi Mao, Wen-Feng Zeng, Hao Chi, Si-Min He
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning. Journal of proteome research 20 (5) (2021)
Wen-Feng Zeng, Wei-Qian Cao, Ming-Qi Liu, Si-Min He, Peng-Yuan Yang
Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3. Nature methods 18 (12) (2021)
Ching Tarn, Wen-Feng Zeng
pDeep3: Toward More Accurate Spectrum Prediction with Fast Few-Shot Learning. Analytical chemistry 93 (14) (2021)
Bo Wen, Wen-Feng Zeng, Yuxing Liao, Zhiao Shi, Sara R Savage, Wen Jiang, Bing Zhang
Deep Learning in Proteomics. Proteomics 20 (21-22) (2020)
Wen-Feng Zeng, Xie-Xuan Zhou, Wen-Jing Zhou, Hao Chi, Jianfeng Zhan, Si-Min He
MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning. Analytical chemistry 91 (15) (2019)
Wen-Jing Zhou, Hao Yang, Wen-Feng Zeng, Kun Zhang, Hao Chi, Si-Min He
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics. Journal of proteome research 18 (7) (2019)
Xie-Xuan Zhou, Wen-Feng Zeng, Hao Chi, Chunjie Luo, Chao Liu, Jianfeng Zhan, Si-Min He, Zhifei Zhang
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning. Analytical chemistry 89 (23) (2017)
Hao Yang, Hao Chi, Wen-Jing Zhou, Wen-Feng Zeng, Chao Liu, Rui-Min Wang, Zhao-Wei Wang, Xiu-Nan Niu, Zhen-Lin Chen, Si-Min He
pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization. Journal of proteome research 17 (1) (2017)