Bo Wen

Scopus Author ID ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 16

Top Topics

Ankylosing Spondylitis

Mass Spectrometry

Cardiovascular Risk Factors

Top Venues

Nature communications

Bioinformatics (Oxford, England)

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Varun Ananth, Justin Sanders, Melih Yilmaz, Bo Wen, Sewoong Oh, William Stafford Noble
A learned score function improves the power of mass spectrometry database search. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Varun Ananth, Justin Sanders, Melih Yilmaz, Bo Wen, Sewoong Oh, William Stafford Noble
A learned score function improves the power of mass spectrometry database search. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Varun Ananth, Justin Sanders, Melih Yilmaz, Bo Wen, Sewoong Oh, William Stafford Noble
A learned score function improves the power of mass spectrometry database search. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Bo Wen, Bing Zhang
PepQuery2 democratizes public MS proteomics data for rapid peptide searching. Nature communications 14 (1) (2023)
Jakub Vašíček, Dafni Skiadopoulou, Ksenia G Kuznetsova, Bo Wen, Stefan E Johansson, Pal Rasmus Njolstad, Stefan Bruckner, Lukas Käll, Marc Vaudel
Finding haplotypic signatures in proteins. GigaScience 12 (2023)
Meenakshi Anurag, Eric J Jaehnig, Karsten Krug, Jonathan T Lei, Erik J Bergstrom, Beom-Jun Kim, Tanmayi D Vashist, Anh Minh Tran Huynh, Yongchao Dou, Xuxu Gou, Chen Huang, Zhiao Shi, Bo Wen, Viktoriya Korchina, Richard A Gibbs, Donna M Muzny, Harsha Vardhan Doddapaneni, Lacey Elizabeth Dobrolecki, Henry Rodriguez, Ana I Robles, Tara Hiltke, Michael T Lewis, Julie R Nangia, Maryam Nemati Shafaee, Shunqiang Li, Ian S Hagemann, Jeremy Hoog, Bora Lim, C Kent Osborne, D R Mani, Michael A Gillette, Bing Zhang, Gloria V Echeverria, George Miles, Mothaffar F Rimawi, Steven A Carr, Foluso O Ademuyiwa, Shankha Satpathy, Matthew J Ellis
Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer. Cancer discovery 12 (11) (2022)
Bo Wen, Bing Zhang
Computational Proteomics: Focus on Deep Learning. Proteomics 20 (21-22) (2021)
Kai Li, Antrix Jain, Anna Malovannaya, Bo Wen, Bing Zhang
DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in Immunopeptidomics. Proteomics 20 (21-22) (2020)
Bo Wen, Kai Li, Yun Zhang, Bing Zhang
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis. Nature communications 11 (1) (2020)
Bo Wen, Wen-Feng Zeng, Yuxing Liao, Zhiao Shi, Sara R Savage, Wen Jiang, Bing Zhang
Deep Learning in Proteomics. Proteomics 20 (21-22) (2020)
Chenwei Wang, Ke Shui, Shanshan Ma, Shaofeng Lin, Ying Zhang, Bo Wen, Wankun Deng, Haodong Xu, Hui Hu, An-Yuan Guo, Yang Xu, Luoying Zhang
Integrated omics in Drosophila uncover a circadian kinome. Nature communications 11 (1) (2020)
Shankha Satpathy, Eric J Jaehnig, Karsten Krug, Beom-Jun Kim, Alexander B Saltzman, Doug W Chan, Kimberly R Holloway, Meenakshi Anurag, Chen Huang, Purba Singh, Ari Gao, Noel Namai, Yongchao Dou, Bo Wen, Suhas V Vasaikar, David Mutch, Mark A Watson, Cynthia Ma, Foluso O Ademuyiwa, Mothaffar F Rimawi, Rachel Schiff, Jeremy Hoog, Samuel Jacobs, Anna Malovannaya, Terry Hyslop, Karl R Clauser, D R Mani, Charles M Perou, George Miles, Bing Zhang, Michael A Gillette, Steven A Carr, Matthew J Ellis
Microscaled proteogenomic methods for precision oncology. Nature communications 11 (1) (2020)
Bo Wen, Xiaojing Wang, Bing Zhang
PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations. Genome research 29 (3) (2019)
Qingsong Hu, Chunlai Li, Shouyu Wang, Yajuan Li, Bo Wen, Yanyan Zhang, Ke Liang, Jun Yao, Youqiong Ye, Heidi Hsiao, Tina K Nguyen, Peter K Park, Sergey D Egranov, David H Hawke, Jeffrey R Marks, Leng Han, Mien-Chie Hung, Bing Zhang, Chunru Lin, Liuqing Yang
LncRNAs-directed PTEN enzymatic switch governs epithelial-mesenchymal transition. Cell research 29 (4) (2019)
Li Zhang, Yan Ren, Tao Yang, Guangwei Li, Jianhai Chen, Andrea R Gschwend, Yeisoo Yu, Guixue Hou, Jin Zi, Ruo Zhou, Bo Wen, Jianwei Zhang, Kapeel Chougule, Muhua Wang, Dario Copetti, Zhiyu Peng, Chengjun Zhang, Yong Edward Zhang, Yidan Ouyang, Rod A Wing, Siqi Liu, Manyuan Long
Rapid evolution of protein diversity by de novo origination in Oryza. Nature ecology & evolution 3 (4) (2019)
Zhuye Jie, Huihua Xia, Shi-Long Zhong, Qiang Feng, Shenghui Li, Suisha Liang, Huanzi Zhong, Zhipeng Liu, Yuan Gao, Hui Zhao, Dongya Zhang, Zheng Su, Zhiwei Fang, Zhou Lan, Junhua Li, Liang Xiao, Jun Li, Ruijun Li, Xiaoping Li, Fei Li, Huahui Ren, Yan Huang, Yangqing Peng, Guanglei Li, Bo Wen, Bo Dong, Ji-Yan Chen, Qing-Shan Geng, Zhi-Wei Zhang, Huanming Yang, Jian Wang, Jun Wang, Xuan Zhang, Lise Madsen, Susanne B Pedersen, Guang Ning, Xun Xu, Xin Liu, Yong Hou, Huijue Jia, Kunlun He, Karsten Kristiansen
The gut microbiome in atherosclerotic cardiovascular disease. Nature communications 8 (1) (2017)