Fabian Joachim Theis (F J Theis, Fabian Theis, Fabian J Theis, F Theis)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 120

Top Venues

Nature communications

Nature methods

Molecular systems biology

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jordão Bragantini, Jackson M Brown, Jean-Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J Schaub, Hythem Sidky, Ahmet Can Solak, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Isaac Virshup, Petr Walczysko, Alan M Watson, Erin Weisbart, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Beth A Cimini, Nils Gehlenborg, Muzlifah A Haniffa, Nathan A Hotaling, Shuichi Onami, Loïc Alain Royer, Stephan Saalfeld, Oliver Stegle, Fabian Joachim Theis, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochemistry and cell biology (2023)
Aron Kos, Juan Pablo Lopez, Joeri Bordes, Carlo de Donno, Julien Dine, Elena Brivio, Stoyo Karamihalev, Malte Daniel Luecken, Suellen Almeida-Correa, Serena Gasperoni, Alec Dick, Lucas Miranda, Maren Büttner, Rainer Stoffel, Cornelia Flachskamm, Fabian Joachim Theis, Mathias V Schmidt, Alon Chen
Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus. Science advances 9 (48) (2023)
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Daniel Luecken, Daniel C Strobl, Juan Henao, Fabiola Curion, null null, Herbert B Schiller, Fabian Joachim Theis
Best practices for single-cell analysis across modalities. Nature reviews. Genetics (2023)
Karin Hrovatin, Aimée Bastidas-Ponce, Mostafa Bakhti, Luke Zappia, Maren Büttner, Ciro Salinno, Michael Sterr, Anika Böttcher, Adriana Migliorini, Heiko Lickert, Fabian Joachim Theis
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas. Nature metabolism (2023)
Laura D Martens, David S Fischer, Vicente A Yépez, Fabian Joachim Theis, Julien Gagneur
Modeling fragment counts improves single-cell ATAC-seq analysis. Nature methods (2023)
Lieke Michielsen, Mohammad Lotfollahi, Daniel Strobl, Lisa Sikkema, Marcel J T Reinders, Fabian Joachim Theis, Ahmed Mahfouz
Single-cell reference mapping to construct and extend cell-type hierarchies. NAR genomics and bioinformatics 5 (3) (2023)
Stefanie Bärthel, Chiara Falcomatà, Roland Rad, Fabian Joachim Theis, Dieter Saur
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy. Nature cancer (2023)
Rui Chen, Jin Li, Jun Wang, Ignacio Ibarra, Xuesen Cheng, Malte Daniel Luecken, Jiaxiong Liu, Aboozar Monavarfeshani, Wenjun Yan, Yiqiao Zheng, Zhen Zuo, Samantha Colborn, Berenice Cortez, Leah A Owen, Nicholas Tran, Karthik Shekhar, Joshua R Sanes, Tim Stout, Shiming Chen, Yumei Li, Margaret DeAngelis, Fabian Joachim Theis
Integrated multi-omics single cell atlas of the human retina. Research square (2023)
Sayedali Shetab Boushehri, Katharina Essig, Nikolaos-Kosmas Chlis, Sylvia Herter, Marina Bacac, Fabian Joachim Theis, Elke Glasmacher, Carsten Marr, Fabian Schmich
Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies. Nature communications 14 (1) (2023)
Maria Polychronidou, Jingyi Hou, M Madan Babu, Prisca Liberali, Ido Amit, Bart Deplancke, Galit Lahav, Shalev Itzkovitz, Matthias Mann, Julio Saez-Rodriguez, Fabian Joachim Theis, Roland Eils
Single-cell biology: what does the future hold? Molecular systems biology (2023)
Carlo de Donno, Soroor Hediyeh-Zadeh, Amir Ali Moinfar, Marco Wagenstetter, Luke Zappia, Mohammad Lotfollahi, Fabian Joachim Theis
Population-level integration of single-cell datasets enables multi-scale analysis across samples. Nature methods (2023)
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Daniel Luecken, Daniel C Strobl, Juan Henao, Fabiola Curion, null null, Herbert B Schiller, Fabian Joachim Theis
Best practices for single-cell analysis across modalities. Nature reviews. Genetics (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, Dominik Klein, Justin Hong, Aaron Streets, Fabian Joachim Theis, Nir Yosef
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells. Nature methods (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology (2023)
Niklas J Lang, Janine Gote-Schniering, Diana Porras-Gonzalez, Lin Yang, Laurens J De Sadeleer, R Christoph Jentzsch, Vladimir A Shitov, Shuhong Zhou, Meshal Ansari, Ahmed Agami, Christoph H Mayr, Baharak Hooshiar Kashani, Yuexin Chen, Lukas Heumos, Jeanine C Pestoni, Eszter Sarolta Molnar, Emiel Geeraerts, Vincent Anquetil, Laurent Saniere, Melanie Wögrath, Michael Gerckens, Mareike Lehmann, Ali Oender Yildirim, Rudolf Hatz, Nikolaus Kneidinger, Juergen Behr, Wim A Wuyts, Mircea-Gabriel Stoleriu, Malte Daniel Luecken, Fabian Joachim Theis, Gerald Burgstaller, Herbert B Schiller
Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis. Science translational medicine 15 (725) (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Marvin Thielert, Ericka Cm Itang, Constantin Ammar, Florian A Schober, Isabell Bludau, Lisa Schweizer, Thierry M Nordmann, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Mitchell Paul Levesque, Fabian Joachim Theis, Martin Steger, Matthias Mann
Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Molecular systems biology (2023)
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel C Strobl, Tessa E Gillett, Luke Zappia, Elo Madissoon, Nikolay S Markov, Laure-Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie-Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore C A Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal Inecik, Manu Jain, Theodore S Kapellos, Tessa M Kole, Sylvie Leroy, Christoph H Mayr, Amanda J Oliver, Michael von Papen, Lance Peter, Chase J Taylor, Thomas Walzthoeni, Chuan Xu, Linh T Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J Gutierrez, Lukas Heumos, Ni Huang, Ignacio L Ibarra, Nathan D Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera-López, Kyle J Travaglini, Anna Wilbrey-Clark, Kaylee B Worlock, Masahiro Yoshida, null null, Maarten van den Berge, Yohan Bosse, Tushar J Desai, Oliver Eickelberg, Naftali Kaminski, Mark A Krasnow, Robert Lafyatis, Marko Z Nikolić, Joseph E Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt-Rosen, Max A Seibold, Dean Sheppard, Douglas P Shepherd, Don D Sin, Hidde J Haisma, Alexander M Tsankov, Jeffrey A Whitsett, Yan Xu, Nicholas E Banovich, Pascal Barbry, Elizabeth Thu Duong, Christine S Falk, Kerstin B Meyer, Jonathan A Kropski, Dana Pe'er, Herbert B Schiller, Purushothama Rao Tata, Joachim L Schultze, Sarah A Teichmann, Alexander V Misharin, Martijn C Nawijn, Malte Daniel Luecken, Fabian Joachim Theis
An integrated cell atlas of the lung in health and disease. Nature medicine (2023)
Karin Hrovatin, Amir Ali Moinfar, Alejandro Tejada Lapuerta, Luke Zappia, Benjamin J Lengerich, Manolis Kellis, Fabian Joachim Theis
Integrating single-cell RNA-seq datasets with substantial batch effects. bioRxiv : the preprint server for biology (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Amit Frishberg, Neta Milman, Ayelet Alpert, Hannah Spitzer, Ben Asani, Johannes B Schiefelbein, Evgeny Bakin, Karen Regev-Berman, Siegfried G Priglinger, Joachim L Schultze, Fabian Joachim Theis, Shai S Shen-Orr
Reconstructing disease dynamics for mechanistic insights and clinical benefit. Nature communications 14 (1) (2023)
Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo de Donno, Leon Hetzel, Yuge Ji, Ignacio L Ibarra, Sanjay R Srivatsan, Mohsen Naghipourfar, Riza M Daza, Beth Martin, Jay Shendure, José L McFaline-Figueroa, Pierre Boyeau, F Alexander Wolf, Nafissa Yakubova, Stephan Günnemann, Cole Trapnell, David Lopez-Paz, Fabian Joachim Theis
Predicting cellular responses to complex perturbations in high-throughput screens. Molecular systems biology (2023)
Felix Fischer, David S Fischer, Evan Biederstedt, Alexandra-Chloé Villani, Fabian Joachim Theis
Scaling cross-tissue single-cell annotation models. bioRxiv : the preprint server for biology (2023)
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, null null, Bonnie Berger, Dana Pe'er, Aviv Regev, Sarah A Teichmann, Francesca Finotello, F Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian Joachim Theis
The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature biotechnology (2023)
Sebastian Schmidt, Constantin Stautner, Duc Tung Vu, Alexander Heinz, Martin Regensburger, Özge Karayel, Dietrich Trümbach, Anna Artati, Sabine Kaltenhäuser, Mohamed Zakaria Nassef, Sina Hembach, Letyfee Steinert, Beate Winner, Juergen Winkler, Martin Jastroch, Malte Daniel Luecken, Fabian Joachim Theis, Gil Gregor Westmeyer, Jerzy Adamski, Matthias Mann, Karsten Hiller, Florian Giesert, Daniela Maria Vogt Weisenhorn, Wolfgang Wurst
A reversible state of hypometabolism in a human cellular model of sporadic Parkinson's disease. Nature communications 14 (1) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Hannah Spitzer, Scott Berry, Mark W Donoghoe, Lucas Pelkmans, Fabian Joachim Theis
Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps. Nature methods (2023)
Seddik Hammad, Christoph Ogris, Amnah Othman, Pia Erdoesi, Wolfgang Schmidt-Heck, Ina Biermayer, Barbara Helm, Yan Gao, Weronika Piorońska, Christian H Holland, Lorenza A D'Alessandro, Carolina de la Torre, Carsten Sticht, Sherin Al Aoua, Fabian Joachim Theis, Heike Bantel, Matthias P Ebert, Ursula Klingmüller, Jan G Hengstler, Steven Dooley, Nikola S Mueller
Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation. Cell death & disease 14 (7) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Adam Gayoso, Romain Lopez, Galen Xing, Pierre Boyeau, Valeh Valiollah Pour Amiri, Justin Hong, Katherine Wu, Michael Jayasuriya, Edouard Mehlman, Maxime Langevin, Yining Liu, Jules Samaran, Gabriel Misrachi, Achille Nazaret, Oscar Clivio, Chenling A Xu, Tal Ashuach, Mariano Gabitto, Mohammad Lotfollahi, Valentine Svensson, Eduardo da Veiga Beltrame, Vitalii Kleshchevnikov, Carlos Talavera-López, Lior Pachter, Fabian Joachim Theis, Aaron Streets, Michael I Jordan, Jeffrey Regier, Nir Yosef
A Python library for probabilistic analysis of single-cell omics data. Nature biotechnology 40 (2) (2022)
Sebastian Schmidt, Malte Daniel Luecken, Dietrich Trümbach, Sina Hembach, Kristina M Niedermeier, Nicole Wenck, Klaus Pflügler, Constantin Stautner, Anika Böttcher, Heiko Lickert, Ciro Ramírez-Suástegui, Ruhel Ahmad, Michael J Ziller, Julia C Fitzgerald, Viktoria Ruf, Wilma D J van de Berg, Allert J Jonker, Thomas Gasser, Beate Winner, Juergen Winkler, Daniela Maria Vogt Weisenhorn, Florian Giesert, Fabian Joachim Theis, Wolfgang Wurst
Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease. Nature communications 13 (1) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
David S Fischer, Anna C Schaar, Fabian Joachim Theis
Modeling intercellular communication in tissues using spatial graphs of cells. Nature biotechnology (2022)
Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B Hoerning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Sabrina Richter, David S Fischer, Oliver Raether, Melvin A Park, Florian Meier, Fabian Joachim Theis, Matthias Mann
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation. Molecular systems biology 18 (3) (2022)
Bob A Hersbach, David S Fischer, Giacomo Masserdotti, null Deeksha, Karolina Mojžišová, Thomas Waltzhöni, Diego Rodriguez-Terrones, Matthias Heinig, Fabian Joachim Theis, Magdalena Götz, Stefan H Stricker
Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Molecular systems biology 18 (9) (2022)
Jessica Giehrl-Schwab, Florian Giesert, Benedict Rauser, Chu-Lan Lao, Sina Hembach, Sandrine Lefort, Ignacio L Ibarra, Christina Koupourtidou, Malte Daniel Luecken, Dong-Jiunn Jeffery Truong, Judith Fischer-Sternjak, Giacomo Masserdotti, Nilima Prakash, Jovica Ninkovic, Sabine M Hölter, Daniela M Vogt Weisenhorn, Fabian Joachim Theis, Magdalena Götz, Wolfgang Wurst
Parkinson's disease motor symptoms rescue by CRISPRa-reprogramming astrocytes into GABAergic neurons. EMBO molecular medicine 14 (5) (2022)
Mostafa Bakhti, Aimée Bastidas-Ponce, Sophie Tritschler, Oliver Czarnecki, Marta Tarquis-Medina, Eva Nedvedova, Jessica Jaki, Stefanie J Willmann, Katharina Scheibner, Perla Cota, Ciro Salinno, Karsten Boldt, Nicola Horn, Marius Ueffing, Ingo Burtscher, Fabian Joachim Theis, Ünal Coskun, Heiko Lickert
Synaptotagmin-13 orchestrates pancreatic endocrine cell egression and islet morphogenesis. Nature communications 13 (1) (2022)
Giovanni Palla, Hannah Spitzer, Michal Klein, David S Fischer, Anna Christina Schaar, Louis Benedikt Kuemmerle, Sergei Rybakov, Ignacio L Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, Fabian Joachim Theis
Squidpy: a scalable framework for spatial omics analysis. Nature methods 19 (2) (2022)
Alessandro Zambusi, Klara Tereza Novoselc, Saskia Hutten, Sofia Kalpazidou, Christina Koupourtidou, Rico Schieweck, Sven Aschenbroich, Lara Silva, Ayse Seda Yazgili, Frauke van Bebber, Bettina Schmid, Gabriel Möller, Clara Tritscher, Christian Stigloher, Claire Delbridge, Swetlana Sirko, Zeynep Irem Günes, Sabine Liebscher, Jürgen Schlegel, Hananeh Aliee, Fabian Joachim Theis, Silke Meiners, Michael Kiebler, Dorothee Dormann, Jovica Ninkovic
TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury. Nature neuroscience 25 (12) (2022)
Svenja Offer, Elena Hartner, Sebastiano Di Bucchianico, Christoph Bisig, Stefanie Bauer, Jana Pantzke, Elias J Zimmermann, Xin Cao, Stefanie Binder, Evelyn Kuhn, Anja Huber, Seongho Jeong, Uwe Käfer, Patrick Martens, Arunas Mesceriakovas, Jan Bendl, Ramona Brejcha, Angela Buchholz, Daniella Gat, Thorsten Hohaus, Narges Rastak, Gert Jakobi, Markus Kalberer, Tamara Kanashova, Yue Hu, Christoph Ogris, Annalisa Marsico, Fabian Joachim Theis, Michal Pardo, Thomas Gröger, Sebastian Oeder, Jürgen Orasche, Andreas Paul, Till Ziehm, Zhi-Hui Zhang, Thomas Adam, Olli Sippula, Martin Sklorz, Jürgen Schnelle-Kreis, Hendryk Czech, Astrid Kiendler-Scharr, Yinon Rudich, Ralf Zimmermann
Effect of Atmospheric Aging on Soot Particle Toxicity in Lung Cell Models at the Air-Liquid Interface: Differential Toxicological Impacts of Biogenic and Anthropogenic Secondary Organic Aerosols (SOAs). Environmental health perspectives 130 (2) (2022)
Margaret E Magaletta, Macrina Lobo, Eric M Kernfeld, Hananeh Aliee, Jack D Huey, Teagan J Parsons, Fabian Joachim Theis, René Maehr
Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development. Nature communications 13 (1) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
Daniel Reichart, Eric L Lindberg, Henrike Maatz, Antonio M A Miranda, Anissa Viveiros, Nikolay Shvetsov, Anna Gaertner, Emily R Nadelmann, Michael Lee, Kazumasa Kanemaru, Jorge Ruiz-Orera, Viktoria Strohmenger, Daniel M DeLaughter, Giannino Patone, Hao Zhang, Andrew Woehler, Christoph Lippert, Yuri Kim, Eleonora Adami, Joshua M Gorham, Sam N Barnett, Kemar J Brown, Rachel J Buchan, Rasheda A Chowdhury, Chrystalla Constantinou, James Cranley, Leanne E Felkin, Henrik Fox, Ahla Ghauri, Jan F Gummert, Masatoshi Kanda, Ruoyan Li, Lukas Mach, Barbara McDonough, Sara Samari, Farnoush Shahriaran, Clarence Yapp, Caroline Stanasiuk, Pantazis I Theotokis, Fabian Joachim Theis, Antoon van den Bogaerdt, Hiroko Wakimoto, James S Ware, Catherine L Worth, Paul J R Barton, Young-Ae Lee, Sarah A Teichmann, Andreas Brodehl, Michela Noseda, Gavin Y Oudit, Matthias Heinig, Jonathan G Seidman, Norbert Hübner, Christine E Seidman
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies. Science (New York, N.Y.) 377 (6606) (2022)
Konstantin Lutz, Andrea Musumeci, Christopher Sie, Ezgi Dursun, Elena Winheim, Johannes Bagnoli, Christoph Ziegenhain, Lisa Rausch, Volker Bergen, Malte Daniel Luecken, Robert A J Oostendorp, Barbara U Schraml, Fabian Joachim Theis, Wolfgang Enard, Thomas Korn, Anne B Krug
Ly6D + Siglec-H + precursors contribute to conventional dendritic cells via a Zbtb46 + Ly6D + intermediary stage. Nature communications 13 (1) (2022)
Laura Stirm, Peter Huypens, Steffen Sass, Richa Batra, Louise Fritsche, Sara Brucker, Harald Abele, Anita M Hennige, Fabian Joachim Theis, Johannes Beckers, Martin Hrabě de Angelis, Andreas Fritsche, Hans-Ulrich Häring, Harald Staiger
Author Correction: Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin. Scientific reports 12 (1) (2022)
Bo Hu, Sara Lelek, Bastiaan Spanjaard, Hadil El-Sammak, Mariana Guedes Simões, Janita Mintcheva, Hananeh Aliee, Ronny Schäfer, Alexander M Meyer, Fabian Joachim Theis, Didier Y R Stainier, Daniela Panakova, Jan Philipp Junker
Origin and function of activated fibroblast states during zebrafish heart regeneration. Nature genetics 54 (8) (2022)
Giovanni Palla, David S Fischer, Aviv Regev, Fabian Joachim Theis
Spatial components of molecular tissue biology. Nature biotechnology 40 (3) (2022)
Volker Bergen, Ruslan A Soldatov, Peter V Kharchenko, Fabian Joachim Theis
RNA velocity-current challenges and future perspectives. Molecular systems biology 17 (8) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
Marius Lange, Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti, Heiko Lickert, Meshal Ansari, Janine Schniering, Herbert B Schiller, Dana Pe'er, Fabian Joachim Theis
CellRank for directed single-cell fate mapping. Nature methods 19 (2) (2022)
Gregory P Way, Casey S Greene, Piero Carnici, Benilton S Carvalho, Michiel J L de Hoon, Stacey D Finley, Sara J C Gosline, Kim-Anh Lê Cao, Jerry S H Lee, Luigi Marchionni, Nicolas Robine, Suzanne S Sindi, Fabian Joachim Theis, Jean Yee Hwa Yang, Anne E Carpenter, Elana J Fertig
A field guide to cultivating computational biology. PLoS biology 19 (10) (2021)
Katharina T Schmid, Barbara Höllbacher, Cristiana Cruceanu, Anika Böttcher, Heiko Lickert, Elisabeth B Binder, Fabian Joachim Theis, Matthias Heinig
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies. Nature communications 12 (1) (2021)
Anna Danese, Maria L Richter, Kridsadakorn Chaichoompu, David S Fischer, Fabian Joachim Theis, Maria Colomé-Tatché
EpiScanpy: integrated single-cell epigenomic analysis. Nature communications 12 (1) (2021)
David S Fischer, Meshal Ansari, Karolin I Wagner, Sebastian Jarosch, Yiqi Huang, Christoph H Mayr, Maximilian Strunz, Niklas J Lang, Elvira D'Ippolito, Monika Hammel, Laura Mateyka, Simone Weber, Lisa S Wolff, Klaus Witter, Isis E Fernandez, Gabriela Leuschner, Katrin Milger, Marion Frankenberger, Lorenz Nowak, Katharina Heinig-Menhard, Ina Koch, Mircea G Stoleriu, Anne Hilgendorff, Jürgen Behr, Andreas Pichlmair, Benjamin Schubert, Fabian Joachim Theis, Dirk H Busch, Herbert B Schiller, Kilian Schober
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through 'reverse phenotyping'. Nature communications 12 (1) (2021)
Stefanie Warnat-Herresthal, Hartmut Schultze, Krishnaprasad Lingadahalli Shastry, Sathyanarayanan Manamohan, Saikat Mukherjee, Vishesh Garg, Ravi Sarveswara, Kristian Händler, Peter Pickkers, Nasir Ahmad Aziz, Sofia Ktena, Florian Tran, Michael Bitzer, Stephan Ossowski, Nicolas Casadei, Christian Herr, Daniel Petersheim, Uta Behrends, Fabian Kern, Tobias Fehlmann, Philipp Schommers, Clara Lehmann, Max Augustin, Jan Rybniker, Janine Altmüller, Neha Mishra, Joana P Bernardes, Benjamin Krämer, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Elena De Domenico, Christian Siever, Michael Kraut, Milind Desai, Bruno Monnet, Maria Saridaki, Charles Martin Siegel, Anna Drews, Melanie Nuesch-Germano, Heidi Theis, Jan Heyckendorf, Stefan Schreiber, Sarah Kim-Hellmuth, null null, Jacob Nattermann, Dirk Skowasch, Ingo Kurth, Andreas Keller, Robert Bals, Peter Nürnberg, Olaf Rieß, Philip Rosenstiel, Mihai M Netea, Fabian Joachim Theis, Sach Mukherjee, Michael Backes, Anna C Aschenbrenner, Thomas Ulas, null null, Monique M B Breteler, Evangelos J Giamarellos-Bourboulis, Matthijs Kox, Matthias Becker, Sorin Cheran, Michael S Woodacre, Eng Lim Goh, Joachim L Schultze
Swarm Learning for decentralized and confidential clinical machine learning. Nature 594 (7862) (2021)
Sarah Kunze, Alexander Cecil, Cornelia Prehn, Gabriele Möller, Andreas Ohlmann, Gerhild Wildner, Stephan Thurau, Kristian Unger, Ute Rößler, Sabine M Hölter, Soile Tapio, Florian Wagner, Andreas Beyerlein, Fabian Joachim Theis, Horst Zitzelsberger, Ulrike M Kulka, Jerzy Adamski, Jochen Graw, Claudia Dalke
Posterior subcapsular cataracts are a late effect after acute exposure to 0.5 Gy ionizing radiation in mice. International journal of radiation biology 97 (4) (2021)
Christoph H Mayr, Lukas M Simon, Gabriela Leuschner, Meshal Ansari, Janine Schniering, Philipp E Geyer, Ilias Angelidis, Maximilian Strunz, Pawandeep Singh, Nikolaus Kneidinger, Frank Reichenberger, Edith Silbernagel, Stephan Böhm, Heiko Adler, Michael Lindner, Britta Maurer, Anne Hilgendorff, Antje Prasse, Jürgen Behr, Matthias Mann, Oliver Eickelberg, Fabian Joachim Theis, Herbert B Schiller
Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers. EMBO molecular medicine 13 (4) (2021)
Maren Büttner, J Ostner, Christian L Müller, Fabian Joachim Theis, Benjamin Schubert
scCODA is a Bayesian model for compositional single-cell data analysis. Nature communications 12 (1) (2021)
Juan Pablo Lopez, Elena Brivio, Alice Santambrogio, Carlo De Donno, Aron Kos, Miriam Peters, Nicolas Rost, Darina Czamara, Tanja M Brückl, Simone Roeh, Max L Pöhlmann, Clara Engelhardt, Andrea Ressle, Rainer Stoffel, Alina Tontsch, Javier M Villamizar, Martin Reincke, Anna Riester, Silviu Sbiera, Martin Fassnacht, Helen S Mayberg, W Edward Craighead, Boadie W Dunlop, Charles B Nemeroff, Mathias V Schmidt, Elisabeth B Binder, Fabian Joachim Theis, Felix Beuschlein, Cynthia Lilian Andoniadou, Alon Chen
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation. Science advances 7 (5) (2021)
Anika Böttcher, Maren Büttner, Sophie Tritschler, Michael Sterr, Alexandra Aliluev, Lena Oppenländer, Ingo Burtscher, Steffen Sass, Martin Irmler, Johannes Beckers, Christoph Ziegenhain, Wolfgang Enard, Andrea C Schamberger, Fien M Verhamme, Oliver Eickelberg, Fabian Joachim Theis, Heiko Lickert
Non-canonical Wnt/PCP signalling regulates intestinal stem cell lineage priming towards enteroendocrine and Paneth cell fates. Nature cell biology 23 (1) (2021)
Florian Meier, Niklas D Köhler, Andreas-David Brunner, Jean-Marc H Wanka, Eugenia Voytik, Maximillian T Strauss, Fabian Joachim Theis, Matthias Mann
Deep learning the collisional cross sections of the peptide universe from a million experimental values. Nature communications 12 (1) (2021)
Emmanuel Klinger, Alessandro Motta, Carsten Marr, Fabian Joachim Theis, Moritz Helmstaedter
Cellular connectomes as arbiters of local circuit models in the cerebral cortex. Nature communications 12 (1) (2021)
Mohammad Lotfollahi, Mohsen Naghipourfar, Malte Daniel Luecken, Matin Khajavi, Maren Büttner, Marco Wagenstetter, Žiga Avsec, Adam Gayoso, Nir Yosef, Marta Interlandi, Sergei Rybakov, Alexander V Misharin, Fabian Joachim Theis
Mapping single-cell data to reference atlases by transfer learning. Nature biotechnology (2021)
Luke Zappia, Fabian Joachim Theis
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape. Genome biology 22 (1) (2021)
David S Fischer, Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos, Sophie Tritschler, Olle Holmberg, Hananeh Aliee, Fabian Joachim Theis
Sfaira accelerates data and model reuse in single cell genomics. Genome biology 22 (1) (2021)
David S Fischer, Yihan Wu, Benjamin Schubert, Fabian Joachim Theis
Predicting antigen specificity of single T cells based on TCR CDR3 regions. Molecular systems biology 16 (8) (2021)
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolas Palacio-Escat, Michal Klein, Olga Ivanova, Márton Ölbei, Attila Gabor, Fabian Joachim Theis, Dezső Módos, Tamas Korcsmaros, Julio Saez-Rodriguez
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. Molecular systems biology 17 (3) (2021)
Lisa Suwandhi, Irem Altun, Ruth Karlina, Viktorian Miok, Tobias Wiedemann, David S Fischer, Thomas Walzthoeni, Christina Lindner, Anika Böttcher, Silke S Heinzmann, Andreas Israel, Ahmed Elagamy Mohamed Mahmoud Khalil, Alexander Braun, Ines Pramme-Steinwachs, Ingo Burtscher, Philippe Schmitt-Kopplin, Matthias Heinig, Martin Elsner, Heiko Lickert, Fabian Joachim Theis, Siegfried Ussar
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population. Nature communications 12 (1) (2021)
Malte Daniel Luecken, Maren Büttner, Kridsadakorn Chaichoompu, A Danese, M Interlandi, M F Mueller, D C Strobl, L Zappia, M Dugas, M Colomé-Tatché, Fabian Joachim Theis
Benchmarking atlas-level data integration in single-cell genomics. Nature methods 19 (1) (2021)
Alexandra Aliluev, Sophie Tritschler, Michael Sterr, Lena Oppenländer, Julia Hinterdobler, Tobias Greisle, Martin Irmler, Johannes Beckers, Na Sun, Axel Walch, Kerstin Stemmer, Alida Kindt, Jan Krumsiek, Matthias H Tschöp, Malte Daniel Luecken, Fabian Joachim Theis, Heiko Lickert, Anika Böttcher
Diet-induced alteration of intestinal stem cell function underlies obesity and prediabetes in mice. Nature metabolism 3 (9) (2021)
Katharina Scheibner, Silvia Schirge, Ingo Burtscher, Maren Büttner, Michael Sterr, Dapeng Yang, Anika Böttcher, null Ansarullah, Martin Irmler, Johannes Beckers, Filippo M Cernilogar, Gunnar Schotta, Fabian Joachim Theis, Heiko Lickert
Epithelial cell plasticity drives endoderm formation during gastrulation. Nature cell biology 23 (7) (2021)
Stephan Sachs, Aimée Bastidas-Ponce, Sophie Tritschler, Mostafa Bakhti, Anika Böttcher, Miguel A Sánchez-Garrido, Marta Tarquis-Medina, Maximilian Kleinert, Katrin Fischer, Sigrid Jall, Alexandra Harger, Erik Bader, Sara Roscioni, Siegfried Ussar, Annette Feuchtinger, Burcak Yesildag, Aparna Neelakandhan, Christine B Jensen, Marion Cornu, Bin Yang, Brian Finan, Richard D DiMarchi, Matthias H Tschöp, Fabian Joachim Theis, Susanna M Hofmann, Timo Dirk Müller, Heiko Lickert
Targeted pharmacological therapy restores β-cell function for diabetes remission. Nature metabolism 2 (2) (2020)
Volker Bergen, Marius Lange, Stefan Peidli, F Alexander Wolf, Fabian Joachim Theis
Generalizing RNA velocity to transient cell states through dynamical modeling. Nature biotechnology 38 (12) (2020)
Nikolaus Rajewsky, Geneviève Almouzni, Stanislaw A Gorski, Stein Aerts, Bjørt K Kragesteen, Michela G Bertero, Christoph Bock, Annelien L Bredenoord, Giacomo Cavalli, Susanna Chiocca, Hans Clevers, Bart De Strooper, Angelika Eggert, Jan Ellenberg, Xosé M Fernández, Marek Figlerowicz, Susan M Gasser, Norbert Hübner, Jørgen Kjems, Juergen A Knoblich, Grietje Krabbe, Peter Lichter, Sten Linnarsson, Jean-Christophe Marine, John C Marioni, Marc A Marti-Renom, Mihai M Netea, Dörthe Nickel, Marcelo Nollmann, Halina R Novak, Helen Parkinson, Stefano Piccolo, Inês Pinheiro, Ana Pombo, Christian Popp, Wolf Reik, Sergio Roman-Roman, Philip Rosenstiel, Joachim L Schultze, Oliver Stegle, Amos Tanay, Giuseppe Testa, Dimitris Thanos, Fabian Joachim Theis, Maria-Elena Torres-Padilla, Alfonso Valencia, Céline Vallot, Alexander van Oudenaarden, Marie Vidal, Thierry Voet, null null
LifeTime and improving European healthcare through cell-based interceptive medicine. Nature 587 (7834) (2020)
Thomas M Conlon, Gerrit John-Schuster, Danijela Heide, Dominik Pfister, Mareike Lehmann, Yan Hu, Zeynep Ertüz, Martin A Lopez, Meshal Ansari, Maximilian Strunz, Christoph Mayr, Ilias Angelidis, Chiara Ciminieri, Rita Costa, Marlene Sophia Kohlhepp, Adrien Guillot, Gizem Günes, Aicha Jeridi, Maja C Funk, Giorgi Beroshvili, Sandra Prokosch, Jenny Hetzer, Stijn E Verleden, Hani N Alsafadi, Michael Lindner, Gerald Burgstaller, Lore Becker, Martin Irmler, Michael Dudek, Jakob Janzen, Eric Goffin, Reinoud Gosens, Percy A Knolle, Bernard Pirotte, Tobias Stoeger, Johannes Beckers, Darcy E Wagner, Indrabahadur Singh, Fabian Joachim Theis, Martin Hrabě de Angelis, Tracy O'Connor, Frank Tacke, Michael Boutros, Emmanuel Dejardin, Oliver Eickelberg, Herbert B Schiller, Melanie Königshoff, Mathias F Heikenwälder, Ali Oender Yildirim
Inhibition of LTβR signalling activates WNT-induced regeneration in lung. Nature 588 (7836) (2020)
Jan Kranich, Nikolaos-Kosmas Chlis, Lisa Rausch, Ashretha Latha, Martina Schifferer, Tilman Kurz, Agnieszka Foltyn-Arfa Kia, Mikael Simons, Fabian Joachim Theis, Thomas Brocker
In vivo identification of apoptotic and extracellular vesicle-bound live cells using image-based deep learning. Journal of extracellular vesicles 9 (1) (2020)
Adrian Fischer, Tim Koopmans, Pushkar Ramesh, Simon Christ, Maximilian Strunz, Juliane Wannemacher, Michaela Aichler, Annette Feuchtinger, Axel Walch, Meshal Ansari, Fabian Joachim Theis, Kenji Schorpp, Kamyar Hadian, Philipp-Alexander Neumann, Herbert B Schiller, Yuval Rinkevich
Post-surgical adhesions are triggered by calcium-dependent membrane bridges between mesothelial surfaces. Nature communications 11 (1) (2020)
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee, Paulina Ogar, Arunima Sengupta, Igor Kukhtevich, Robert Schneider, Zhong-Ming Zhao, Carola Voss, Tobias Stoeger, Jens H L Neumann, Anne Hilgendorff, Jürgen Behr, Michael O'Reilly, Mareike Lehmann, Gerald Burgstaller, Melanie Königshoff, Harold A Chapman, Fabian Joachim Theis, Herbert B Schiller
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis. Nature communications 11 (1) (2020)
Monique G P van der Wijst, D H de Vries, Hilde E Groot, Gosia Trynka, C C Hon, Marc Jan Bonder, O Stegle, Martijn C Nawijn, Youssef Idaghdour, Pim van der Harst, C J Ye, J Powell, Fabian Joachim Theis, Ahmed Mahfouz, Matthias Heinig, Lude H Franke
The single-cell eQTLGen consortium. eLife 9 (2020)
Elba Raimúndez, Simone Keller, Gwen Zwingenberger, Karolin Ebert, Sabine Hug, Fabian Joachim Theis, Dieter Maier, Birgit Luber, Jan Hasenauer
Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines. PLoS computational biology 16 (3) (2020)
Johannes B Müller, Philipp E Geyer, Ana R Colaço, Peter V Treit, Maximillian T Strauss, Mario Oroshi, Sophia Doll, Sebastian Virreira Winter, Jakob M Bader, Niklas Köhler, Fabian Joachim Theis, Alberto Santos, Matthias Mann
The proteome landscape of the kingdoms of life. Nature 582 (7813) (2020)
Fabian Fröhlich, Anita Reiser, Laura Fink, Daniel Woschée, Thomas Ligon, Fabian Joachim Theis, Joachim Oskar Rädler, Jan Hasenauer
Erratum: Publisher Correction: Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection. NPJ systems biology and applications 5 (2019)
David S Fischer, Anna K Fiedler, Eric M Kernfeld, Ryan M J Genga, Aimée Bastidas-Ponce, Mostafa Bakhti, Heiko Lickert, Jan Hasenauer, René Maehr, Fabian Joachim Theis
Inferring population dynamics from single-cell RNA-sequencing time series data. Nature biotechnology 37 (4) (2019)
M Laimighofer, R Lickert, R Fuerst, Fabian Joachim Theis, C Winkler, E Bonifacio, A-G Ziegler, J Krumsiek
Common patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity - indications of immune cell activation. Scientific reports 9 (1) (2019)
Malte Daniel Luecken, Fabian Joachim Theis
Current best practices in single-cell RNA-seq analysis: a tutorial. Molecular systems biology 15 (6) (2019)
Felipe A Vieira Braga, Gozde Kar, Marijn Berg, Orestes A Carpaij, Krzysztof Polanski, Lukas M Simon, Sharon Brouwer, Tomás Gomes, Laura Hesse, Jian Jiang, Eirini S Fasouli, Mirjana Efremova, Roser Vento-Tormo, Carlos Talavera-López, Marnix R Jonker, Karen Affleck, Subarna Palit, Paulina M Strzelecka, Helen V Firth, Krishnaa T A Mahbubani, Ana Cvejic, Kerstin B Meyer, Kourosh Saeb Parsy, Marjan Luinge, Corry-Anke Brandsma, Hidde J Haisma, Ilias Angelidis, Maximilian Strunz, Gerard H Koppelman, Antoon J van Oosterhout, Herbert B Schiller, Fabian Joachim Theis, Maarten van den Berge, Martijn C Nawijn, Sarah A Teichmann
A cellular census of human lungs identifies novel cell states in health and in asthma. Nature medicine 25 (7) (2019)
Mohammad Lotfollahi, F Alexander Wolf, Fabian Joachim Theis
scGen predicts single-cell perturbation responses. Nature methods 16 (8) (2019)
Sophie Tritschler, Maren Büttner, David S Fischer, Marius Lange, Volker Bergen, Heiko Lickert, Fabian Joachim Theis
Concepts and limitations for learning developmental trajectories from single cell genomics. Development (Cambridge, England) 146 (12) (2019)
Xia Sheng, Hatice Zeynep Nenseth, Su Qu, Omer F Kuzu, Turid Frahnow, Lukas M Simon, Stephanie Greene, Qingping Zeng, Ladan Fazli, Paul S Rennie, Ian G Mills, Håvard Danielsen, Fabian Joachim Theis, John B Patterson, Yang Jin, Fahri Saatcioglu
IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling. Nature communications 10 (1) (2019)
Ilias Angelidis, Lukas M Simon, Isis E Fernandez, Maximilian Strunz, Christoph H Mayr, Flavia R Greiffo, George Tsitsiridis, Meshal Ansari, Elisabeth Graf, Tim-Matthias Strom, Monica Nagendran, Tushar J Desai, Oliver Eickelberg, Matthias Mann, Fabian Joachim Theis, Herbert B Schiller
An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics. Nature communications 10 (1) (2019)
Darina Czamara, Gökçen Eraslan, Christian Magnus Page, Jari M T Lahti, Marius Lahti-Pulkkinen, Esa Hämäläinen, Eero Kajantie, Hannele Laivuori, Pia M Villa, Rebecca M Reynolds, Wenche Nystad, Siri E Håberg, Stephanie J London, Kieran J O'Donnell, Elika Garg, Michael J Meaney, Sonja Entringer, Pathik D Wadhwa, Claudia Buss, Meaghan J Jones, David Tse Shen Lin, Julie L MacIsaac, Michael S Kobor, Nastassja Koen, Heather J Zar, Karestan C Koenen, Shareefa Dalvie, Dan J Stein, Ivan Kondofersky, Nikola S Müller, Fabian Joachim Theis, null null, Katri Räikkönen, Elisabeth B Binder
Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns. Nature communications 10 (1) (2019)
Stephan M Tirier, Jeongbin Park, Friedrich Preusser, Lisa Amrhein, Zuguang Gu, Simon Steiger, Jan Philipp Mallm, Teresa Krieger, Marcel Waschow, Björn Eismann, Marta Gut, Ivo G Gut, Karsten Rippe, Matthias Schlesner, Fabian Joachim Theis, Christiane Fuchs, Claudia R Ball, Hanno Glimm, Roland Eils, Christian Conrad
Pheno-seq - linking visual features and gene expression in 3D cell culture systems. Scientific reports 9 (1) (2019)
Ekaterina Mameishvili, Ioannis Serafimidis, Sara Iwaszkiewicz, Matthias Lesche, Susanne Reinhardt, Nora Bölicke, Maren Büttner, Dimitris Stellas, Adriana Papadimitropoulou, Matthias Szabolcs, Konstantinos Anastassiadis, Andreas Dahl, Fabian Joachim Theis, Argiris Efstratiadis, Anthony Gavalas
Aldh1b1 expression defines progenitor cells in the adult pancreas and is required for Kras-induced pancreatic cancer. Proceedings of the National Academy of Sciences of the United States of America 116 (41) (2019)
Gökçen Eraslan, Žiga Avsec, Julien Gagneur, Fabian Joachim Theis
Deep learning: new computational modelling techniques for genomics. Nature reviews. Genetics 20 (7) (2019)

Fabian Joachim Theis.css-eqlu8i{font-size:small;padding-left:4px;} (F J Theis, Fabian Theis, Fabian J Theis, F Theis)

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Fabian Joachim Theis (F J Theis, Fabian Theis, Fabian J Theis, F Theis)