Fabian Joachim Theis (F J Theis, Fabian Theis, Fabian J Theis, F Theis)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 162

Top Venues

Nature communications

Nature methods

Molecular systems biology

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Ben Asani, Olle Holmberg, Johannes B Schiefelbein, Michael Hafner, Tina Herold, Hannah Spitzer, Jakob Siedlecki, Christoph Kern, Karsten U Kortuem, Amit Frishberg, Fabian Joachim Theis, Siegfried G Priglinger
Evaluation of OCT biomarker changes in treatment-naive neovascular AMD using a deep semantic segmentation algorithm. Eye (London, England) (2024)
Felix Drost, Yang An, Irene Bonafonte-Pardàs, Lisa M Dratva, Rik G H Lindeboom, Muzlifah A Haniffa, Sarah A Teichmann, Fabian Joachim Theis, Mohammad Lotfollahi, Benjamin Schubert
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data. Nature communications 15 (1) (2024)
Mayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, Tim Treis, Karin Hrovatin, Giovanni Palla, Anna C Schaar, Fabian Joachim Theis
GraphCompass: spatial metrics for differential analyses of cell organization across conditions. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Till Siebenmorgen, Filipe Menezes, Sabrina Benassou, Erinc Merdivan, Kieran Didi, André Santos Dias Mourão, Radosław Kitel, Pietro Liò, Stefan Kesselheim, Marie Piraud, Fabian Joachim Theis, Michael Sattler, Grzegorz Maria Popowicz
MISATO: machine learning dataset of protein-ligand complexes for structure-based drug discovery. Nature computational science 4 (5) (2024)
Fabiola Curion, Xichen Wu, Lukas Heumos, Mylene Mariana Gonzales André, Lennard Halle, Matiss Ozols, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A Dendrou, Herbert B Schiller, Fabian Joachim Theis
hadge: a comprehensive pipeline for donor deconvolution in single-cell studies. Genome biology 25 (1) (2024)
Fabiola Curion, Fabian Joachim Theis
Machine learning integrative approaches to advance computational immunology. Genome medicine 16 (1) (2024)
Fabiola Curion, Xichen Wu, Lukas Heumos, Mylene Mariana Gonzales André, Lennard Halle, Matiss Ozols, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A Dendrou, Herbert B Schiller, Fabian Joachim Theis
hadge: a comprehensive pipeline for donor deconvolution in single-cell studies. Genome biology 25 (1) (2024)
Xia Sheng, Hatice Zeynep Nenseth, Su Qu, Omer F Kuzu, Turid Frahnow, Lukas M Simon, Stephanie Greene, Qingping Zeng, Ladan Fazli, Paul S Rennie, Ian G Mills, Håvard Danielsen, Fabian Joachim Theis, John B Patterson, Yang Jin, Fahri Saatcioglu
Author Correction: IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling. Nature communications 15 (1) (2024)
Felix Drost, Yang An, Irene Bonafonte-Pardàs, Lisa M Dratva, Rik G H Lindeboom, Muzlifah A Haniffa, Sarah A Teichmann, Fabian Joachim Theis, Mohammad Lotfollahi, Benjamin Schubert
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data. Nature communications 15 (1) (2024)
Philipp Weiler, Marius Lange, Michal Klein, Dana Pe'er, Fabian Joachim Theis
CellRank 2: unified fate mapping in multiview single-cell data. Nature methods (2024)
Christina Koupourtidou, Veronika Schwarz, Hananeh Aliee, Simon Frerich, Judith Fischer-Sternjak, Riccardo Bocchi, Tatiana Simon-Ebert, Xianshu Bai, Swetlana Sirko, Frank Kirchhoff, Martin Dichgans, Magdalena Götz, Fabian Joachim Theis, Jovica Ninkovic
Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex. Nature communications 15 (1) (2024)
Fabiola Curion, Xichen Wu, Lukas Heumos, Mylene Mariana Gonzales André, Lennard Halle, Matiss Ozols, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A Dendrou, Herbert B Schiller, Fabian Joachim Theis
hadge: a comprehensive pipeline for donor deconvolution in single-cell studies. Genome biology 25 (1) (2024)
Philipp Weiler, Marius Lange, Michal Klein, Dana Pe'er, Fabian Joachim Theis
CellRank 2: unified fate mapping in multiview single-cell data. Nature methods 21 (7) (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Felix Drost, Yang An, Irene Bonafonte-Pardàs, Lisa M Dratva, Rik G H Lindeboom, Muzlifah A Haniffa, Sarah A Teichmann, Fabian Joachim Theis, Mohammad Lotfollahi, Benjamin Schubert
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data. Nature communications 15 (1) (2024)
Artur Szałata, Karin Hrovatin, Sören Becker, Alejandro Tejada-Lapuerta, Haotian Cui, Bo Wang, Fabian Joachim Theis
Transformers in single-cell omics: a review and new perspectives. Nature methods 21 (8) (2024)
Till Siebenmorgen, Filipe Menezes, Sabrina Benassou, Erinc Merdivan, Kieran Didi, André Santos Dias Mourão, Radosław Kitel, Pietro Liò, Stefan Kesselheim, Marie Piraud, Fabian Joachim Theis, Michael Sattler, Grzegorz Maria Popowicz
MISATO: machine learning dataset of protein-ligand complexes for structure-based drug discovery. Nature computational science 4 (5) (2024)
Fabiola Curion, Fabian Joachim Theis
Machine learning integrative approaches to advance computational immunology. Genome medicine 16 (1) (2024)
Kevin G Johnston, Steven F Grieco, Qing Nie, Fabian Joachim Theis, Xiangmin Xu
Small data methods in omics: the power of one. Nature methods (2024)
Fabiola Curion, Xichen Wu, Lukas Heumos, Mylene Mariana Gonzales André, Lennard Halle, Matiss Ozols, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A Dendrou, Herbert B Schiller, Fabian Joachim Theis
hadge: a comprehensive pipeline for donor deconvolution in single-cell studies. Genome biology 25 (1) (2024)
Philipp Weiler, Marius Lange, Michal Klein, Dana Pe'er, Fabian Joachim Theis
CellRank 2: unified fate mapping in multiview single-cell data. Nature methods (2024)
Fabiola Curion, Fabian Joachim Theis
Machine learning integrative approaches to advance computational immunology. Genome medicine 16 (1) (2024)
Felix Fischer, David S Fischer, Roman Mukhin, Andrey Isaev, Evan Biederstedt, Alexandra-Chloé Villani, Fabian Joachim Theis
scTab: Scaling cross-tissue single-cell annotation models. Nature communications 15 (1) (2024)
Lukas Heumos, Philipp Ehmele, Tim Treis, Julius Upmeier Zu Belzen, Eljas Roellin, Lilly May, Altana Namsaraeva, Nastassya Horlava, Vladimir A Shitov, Xinyue Zhang, Luke Zappia, Rainer Knoll, Niklas J Lang, Leon Hetzel, Isaac Virshup, Lisa Sikkema, Fabiola Curion, Roland Eils, Herbert B Schiller, Anne Hilgendorff, Fabian Joachim Theis
An open-source framework for end-to-end analysis of electronic health record data. Nature medicine (2024)
Philipp Weiler, Marius Lange, Michal Klein, Dana Pe'er, Fabian Joachim Theis
CellRank 2: unified fate mapping in multiview single-cell data. Nature methods 21 (7) (2024)
Miriam Bosch, Nina Kallin, Sainitin Donakonda, Jitao David Zhang, Hannah Wintersteller, Silke Hegenbarth, Kathrin Heim, Carlos Ramirez, Anna Fürst, Elias Isaac Lattouf, Martin Feuerherd, Sutirtha Chattopadhyay, Nadine Kumpesa, Vera Griesser, Jean-Christophe Hoflack, Juliane Siebourg-Polster, Carolin Mogler, Leo Swadling, Laura J Pallett, Philippa Meiser, Katrin Manske, Gustavo Pereira de Almeida, Anna D Kosinska, Ioana Sandu, Annika Schneider, Vincent Steinbacher, Yan Teng, Julia Schnabel, Fabian Joachim Theis, Adam J Gehring, Andre Boonstra, Harry L A Janssen, Michiel Vandenbosch, Eva Cuypers, Rupert Öllinger, Thomas Engleitner, Roland Rad, Katja Steiger, Annette Oxenius, Wan-Lin Lo, Victoria Klepsch, Gottfried Baier, Bernhard Holzmann, Mala K Maini, Ron M A Heeren, Peter J Murray, Robert Thimme, Carl Herrmann, Ulrike Protzer, Jan Philipp Böttcher, Dietmar Zehn, Dirk Wohlleber, Georg Michael Lauer, Maike Hofmann, Souphalone Luangsay, Percy A Knolle
A liver immune rheostat regulates CD8 T cell immunity in chronic HBV infection. Nature (2024)
Miriam Bosch, Nina Kallin, Sainitin Donakonda, Jitao David Zhang, Hannah Wintersteller, Silke Hegenbarth, Kathrin Heim, Carlos Ramirez, Anna Fürst, Elias Isaac Lattouf, Martin Feuerherd, Sutirtha Chattopadhyay, Nadine Kumpesa, Vera Griesser, Jean-Christophe Hoflack, Juliane Siebourg-Polster, Carolin Mogler, Leo Swadling, Laura J Pallett, Philippa Meiser, Katrin Manske, Gustavo Pereira de Almeida, Anna D Kosinska, Ioana Sandu, Annika Schneider, Vincent Steinbacher, Yan Teng, Julia Schnabel, Fabian Joachim Theis, Adam J Gehring, Andre Boonstra, Harry L A Janssen, Michiel Vandenbosch, Eva Cuypers, Rupert Öllinger, Thomas Engleitner, Roland Rad, Katja Steiger, Annette Oxenius, Wan-Lin Lo, Victoria Klepsch, Gottfried Baier, Bernhard Holzmann, Mala K Maini, Ron M A Heeren, Peter J Murray, Robert Thimme, Carl Herrmann, Ulrike Protzer, Jan Philipp Böttcher, Dietmar Zehn, Dirk Wohlleber, Georg Michael Lauer, Maike Hofmann, Souphalone Luangsay, Percy A Knolle
A liver immune rheostat regulates CD8 T cell immunity in chronic HBV infection. Nature 631 (8022) (2024)
Miriam Bosch, Nina Kallin, Sainitin Donakonda, Jitao David Zhang, Hannah Wintersteller, Silke Hegenbarth, Kathrin Heim, Carlos Ramirez, Anna Fürst, Elias Isaac Lattouf, Martin Feuerherd, Sutirtha Chattopadhyay, Nadine Kumpesa, Vera Griesser, Jean-Christophe Hoflack, Juliane Siebourg-Polster, Carolin Mogler, Leo Swadling, Laura J Pallett, Philippa Meiser, Katrin Manske, Gustavo Pereira de Almeida, Anna D Kosinska, Ioana Sandu, Annika Schneider, Vincent Steinbacher, Yan Teng, Julia Schnabel, Fabian Joachim Theis, Adam J Gehring, Andre Boonstra, Harry L A Janssen, Michiel Vandenbosch, Eva Cuypers, Rupert Öllinger, Thomas Engleitner, Roland Rad, Katja Steiger, Annette Oxenius, Wan-Lin Lo, Victoria Klepsch, Gottfried Baier, Bernhard Holzmann, Mala K Maini, Ron M A Heeren, Peter J Murray, Robert Thimme, Carl Herrmann, Ulrike Protzer, Jan Philipp Böttcher, Dietmar Zehn, Dirk Wohlleber, Georg Michael Lauer, Maike Hofmann, Souphalone Luangsay, Percy A Knolle
A liver immune rheostat regulates CD8 T cell immunity in chronic HBV infection. Nature 631 (8022) (2024)
Felix Fischer, David S Fischer, Roman Mukhin, Andrey Isaev, Evan Biederstedt, Alexandra-Chloé Villani, Fabian Joachim Theis
scTab: Scaling cross-tissue single-cell annotation models. Nature communications 15 (1) (2024)
Mayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, Tim Treis, Karin Hrovatin, Giovanni Palla, Anna C Schaar, Fabian Joachim Theis
GraphCompass: spatial metrics for differential analyses of cell organization across conditions. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Till Siebenmorgen, Filipe Menezes, Sabrina Benassou, Erinc Merdivan, Kieran Didi, André Santos Dias Mourão, Radosław Kitel, Pietro Liò, Stefan Kesselheim, Marie Piraud, Fabian Joachim Theis, Michael Sattler, Grzegorz Maria Popowicz
MISATO: machine learning dataset of protein-ligand complexes for structure-based drug discovery. Nature computational science (2024)
Xia Sheng, Hatice Zeynep Nenseth, Su Qu, Omer F Kuzu, Turid Frahnow, Lukas M Simon, Stephanie Greene, Qingping Zeng, Ladan Fazli, Paul S Rennie, Ian G Mills, Håvard Danielsen, Fabian Joachim Theis, John B Patterson, Yang Jin, Fahri Saatcioglu
Author Correction: IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling. Nature communications 15 (1) (2024)
Till Siebenmorgen, Filipe Menezes, Sabrina Benassou, Erinc Merdivan, Kieran Didi, André Santos Dias Mourão, Radosław Kitel, Pietro Liò, Stefan Kesselheim, Marie Piraud, Fabian Joachim Theis, Michael Sattler, Grzegorz Maria Popowicz
MISATO: machine learning dataset of protein-ligand complexes for structure-based drug discovery. Nature computational science 4 (5) (2024)
Artur Szałata, Karin Hrovatin, Sören Becker, Alejandro Tejada-Lapuerta, Haotian Cui, Bo Wang, Fabian Joachim Theis
Transformers in single-cell omics: a review and new perspectives. Nature methods 21 (8) (2024)
Luca Marconato, Giovanni Palla, Kevin A Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B Shrestha, Benjamin Rombaut, Lotte Pollaris, Laurens Lehner, Harald Vöhringer, Ilia Kats, Yvan Saeys, Sinem K Saka, Wolfgang Huber, Moritz Gerstung, Josh Moore, Fabian Joachim Theis, Oliver Stegle
SpatialData: an open and universal data framework for spatial omics. Nature methods (2024)
Christina Koupourtidou, Veronika Schwarz, Hananeh Aliee, Simon Frerich, Judith Fischer-Sternjak, Riccardo Bocchi, Tatiana Simon-Ebert, Xianshu Bai, Swetlana Sirko, Frank Kirchhoff, Martin Dichgans, Magdalena Götz, Fabian Joachim Theis, Jovica Ninkovic
Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex. Nature communications 15 (1) (2024)
Philipp Weiler, Marius Lange, Michal Klein, Dana Pe'er, Fabian Joachim Theis
CellRank 2: unified fate mapping in multiview single-cell data. Nature methods 21 (7) (2024)
Miriam Bosch, Nina Kallin, Sainitin Donakonda, Jitao David Zhang, Hannah Wintersteller, Silke Hegenbarth, Kathrin Heim, Carlos Ramirez, Anna Fürst, Elias Isaac Lattouf, Martin Feuerherd, Sutirtha Chattopadhyay, Nadine Kumpesa, Vera Griesser, Jean-Christophe Hoflack, Juliane Siebourg-Polster, Carolin Mogler, Leo Swadling, Laura J Pallett, Philippa Meiser, Katrin Manske, Gustavo Pereira de Almeida, Anna D Kosinska, Ioana Sandu, Annika Schneider, Vincent Steinbacher, Yan Teng, Julia Schnabel, Fabian Joachim Theis, Adam J Gehring, Andre Boonstra, Harry L A Janssen, Michiel Vandenbosch, Eva Cuypers, Rupert Öllinger, Thomas Engleitner, Roland Rad, Katja Steiger, Annette Oxenius, Wan-Lin Lo, Victoria Klepsch, Gottfried Baier, Bernhard Holzmann, Mala K Maini, Ron M A Heeren, Peter J Murray, Robert Thimme, Carl Herrmann, Ulrike Protzer, Jan Philipp Böttcher, Dietmar Zehn, Dirk Wohlleber, Georg Michael Lauer, Maike Hofmann, Souphalone Luangsay, Percy A Knolle
A liver immune rheostat regulates CD8 T cell immunity in chronic HBV infection. Nature (2024)
Miriam Bosch, Nina Kallin, Sainitin Donakonda, Jitao David Zhang, Hannah Wintersteller, Silke Hegenbarth, Kathrin Heim, Carlos Ramirez, Anna Fürst, Elias Isaac Lattouf, Martin Feuerherd, Sutirtha Chattopadhyay, Nadine Kumpesa, Vera Griesser, Jean-Christophe Hoflack, Juliane Siebourg-Polster, Carolin Mogler, Leo Swadling, Laura J Pallett, Philippa Meiser, Katrin Manske, Gustavo Pereira de Almeida, Anna D Kosinska, Ioana Sandu, Annika Schneider, Vincent Steinbacher, Yan Teng, Julia Schnabel, Fabian Joachim Theis, Adam J Gehring, Andre Boonstra, Harry L A Janssen, Michiel Vandenbosch, Eva Cuypers, Rupert Öllinger, Thomas Engleitner, Roland Rad, Katja Steiger, Annette Oxenius, Wan-Lin Lo, Victoria Klepsch, Gottfried Baier, Bernhard Holzmann, Mala K Maini, Ron M A Heeren, Peter J Murray, Robert Thimme, Carl Herrmann, Ulrike Protzer, Jan Philipp Böttcher, Dietmar Zehn, Dirk Wohlleber, Georg Michael Lauer, Maike Hofmann, Souphalone Luangsay, Percy A Knolle
A liver immune rheostat regulates CD8 T cell immunity in chronic HBV infection. Nature 631 (8022) (2024)
Mayar Ali, Merel Kuijs, Soroor Hediyeh-Zadeh, Tim Treis, Karin Hrovatin, Giovanni Palla, Anna C Schaar, Fabian Joachim Theis
GraphCompass: spatial metrics for differential analyses of cell organization across conditions. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Christina Koupourtidou, Veronika Schwarz, Hananeh Aliee, Simon Frerich, Judith Fischer-Sternjak, Riccardo Bocchi, Tatiana Simon-Ebert, Xianshu Bai, Swetlana Sirko, Frank Kirchhoff, Martin Dichgans, Magdalena Götz, Fabian Joachim Theis, Jovica Ninkovic
Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex. Nature communications 15 (1) (2024)
Felix Fischer, David S Fischer, Roman Mukhin, Andrey Isaev, Evan Biederstedt, Alexandra-Chloé Villani, Fabian Joachim Theis
scTab: Scaling cross-tissue single-cell annotation models. Nature communications 15 (1) (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael Vinyard, Daniel Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Botvinnik, Louise Deconinck, Kai Waldrant, Bastian Rieck, Constantin Ahlmann-Eltze, Eduardo da Veiga Beltrame, Andrew Benz, Carmen Bravo González-Blas, Ann Chen, Benjamin DeMeo, Can Ergen, Swann Floc'hlay, Adam Gayoso, Stephanie C Hicks, Yuge Ji, Vitalii Kleshchevnikov, Gioele La Manno, Maximilian Lombardo, Romain Lopez, Dario Righelli, Hirak Sarkar, Valentine Svensson, Alexander Tong, Galen Xing, Chenling Xu, Jonathan Bloom, Angela Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jordao Bragantini, Jackson M Brown, Jean-Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J Schaub, Hythem Sidky, Ahmet Can Solak, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Isaac Virshup, Petr Walczysko, Alan M Watson, Erin Weisbart, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Beth A Cimini, Nils Gehlenborg, Muzlifah A Haniffa, Nathan A Hotaling, Shuichi Onami, Loïc Alain Royer, Stephan Saalfeld, Oliver Stegle, Fabian Joachim Theis, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochemistry and cell biology (2023)
Aron Kos, Juan Pablo Lopez, Joeri Bordes, Carlo de Donno, Julien Dine, Elena Brivio, Stoyo Karamihalev, Malte Daniel Luecken, Suellen Almeida-Correa, Serena Gasperoni, Alec Dick, Lucas Miranda, Maren Büttner, Rainer Stoffel, Cornelia Flachskamm, Fabian Joachim Theis, Mathias V Schmidt, Alon Chen
Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus. Science advances 9 (48) (2023)
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Daniel Luecken, Daniel C Strobl, Juan Henao, Fabiola Curion, null null, Herbert B Schiller, Fabian Joachim Theis
Best practices for single-cell analysis across modalities. Nature reviews. Genetics (2023)
Karin Hrovatin, Aimée Bastidas-Ponce, Mostafa Bakhti, Luke Zappia, Maren Büttner, Ciro Salinno, Michael Sterr, Anika Böttcher, Adriana Migliorini, Heiko Lickert, Fabian Joachim Theis
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas. Nature metabolism (2023)
Laura D Martens, David S Fischer, Vicente A Yépez, Fabian Joachim Theis, Julien Gagneur
Modeling fragment counts improves single-cell ATAC-seq analysis. Nature methods (2023)
Lieke Michielsen, Mohammad Lotfollahi, Daniel Strobl, Lisa Sikkema, Marcel J T Reinders, Fabian Joachim Theis, Ahmed Mahfouz
Single-cell reference mapping to construct and extend cell-type hierarchies. NAR genomics and bioinformatics 5 (3) (2023)
Stefanie Bärthel, Chiara Falcomatà, Roland Rad, Fabian Joachim Theis, Dieter Saur
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy. Nature cancer (2023)
Rui Chen, Jin Li, Jun Wang, Ignacio Ibarra, Xuesen Cheng, Malte Daniel Luecken, Jiaxiong Liu, Aboozar Monavarfeshani, Wenjun Yan, Yiqiao Zheng, Zhen Zuo, Samantha Colborn, Berenice Cortez, Leah A Owen, Nicholas Tran, Karthik Shekhar, Joshua R Sanes, Tim Stout, Shiming Chen, Yumei Li, Margaret DeAngelis, Fabian Joachim Theis
Integrated multi-omics single cell atlas of the human retina. Research square (2023)
Sayedali Shetab Boushehri, Katharina Essig, Nikolaos-Kosmas Chlis, Sylvia Herter, Marina Bacac, Fabian Joachim Theis, Elke Glasmacher, Carsten Marr, Fabian Schmich
Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies. Nature communications 14 (1) (2023)
Maria Polychronidou, Jingyi Hou, M Madan Babu, Prisca Liberali, Ido Amit, Bart Deplancke, Galit Lahav, Shalev Itzkovitz, Matthias Mann, Julio Saez-Rodriguez, Fabian Joachim Theis, Roland Eils
Single-cell biology: what does the future hold? Molecular systems biology (2023)
Carlo de Donno, Soroor Hediyeh-Zadeh, Amir Ali Moinfar, Marco Wagenstetter, Luke Zappia, Mohammad Lotfollahi, Fabian Joachim Theis
Population-level integration of single-cell datasets enables multi-scale analysis across samples. Nature methods (2023)
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Daniel Luecken, Daniel C Strobl, Juan Henao, Fabiola Curion, null null, Herbert B Schiller, Fabian Joachim Theis
Best practices for single-cell analysis across modalities. Nature reviews. Genetics (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, Dominik Klein, Justin Hong, Aaron Streets, Fabian Joachim Theis, Nir Yosef
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells. Nature methods (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology (2023)
Niklas J Lang, Janine Gote-Schniering, Diana Porras-Gonzalez, Lin Yang, De Sadeleer Laurens, R Christoph Jentzsch, Vladimir A Shitov, Shuhong Zhou, Meshal Ansari, Ahmed Agami, Christoph H Mayr, Baharak Hooshiar Kashani, Yuexin Chen, Lukas Heumos, Jeanine C Pestoni, Eszter Sarolta Molnar, Emiel Geeraerts, Vincent Anquetil, Laurent Saniere, Melanie Wögrath, Michael Gerckens, Mareike Lehmann, Ali Oender Yildirim, Rudolf Hatz, Nikolaus Kneidinger, Juergen Behr, Wim A Wuyts, Mircea-Gabriel Stoleriu, Malte Daniel Luecken, Fabian Joachim Theis, Gerald Burgstaller, Herbert B Schiller
Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis. Science translational medicine 15 (725) (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Marvin Thielert, Ericka Cm Itang, Constantin Ammar, Florian A Schober, Isabell Bludau, Lisa Schweizer, Thierry M Nordmann, Patricia Skowronek, Maria Wahle, Wen-Feng Zeng, Xie-Xuan Zhou, Andreas-David Brunner, Sabrina Richter, Mitchell Paul Levesque, Fabian Joachim Theis, Martin Steger, Matthias Mann
Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel. Molecular systems biology (2023)
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel C Strobl, Tessa E Gillett, Luke Zappia, Elo Madissoon, Nikolay S Markov, Laure-Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie-Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore C A Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal Inecik, Manu Jain, Theodore S Kapellos, Tessa M Kole, Sylvie Leroy, Christoph H Mayr, Amanda J Oliver, Michael von Papen, Lance Peter, Chase J Taylor, Thomas Walzthoeni, Chuan Xu, Linh T Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J Gutierrez, Lukas Heumos, Ni Huang, Ignacio L Ibarra, Nathan D Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera-López, Kyle J Travaglini, Anna Wilbrey-Clark, Kaylee B Worlock, Masahiro Yoshida, null null, Maarten van den Berge, Yohan Bosse, Tushar J Desai, Oliver Eickelberg, Naftali Kaminski, Mark A Krasnow, Robert A Lafyatis, Marko Z Nikolić, Joseph E Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt-Rosen, Max A Seibold, Dean Sheppard, Douglas P Shepherd, Don D Sin, Hidde J Haisma, Alexander M Tsankov, Jeffrey A Whitsett, Yan Xu, Nicholas E Banovich, Pascal Barbry, Elizabeth Thu Duong, Christine S Falk, Kerstin B Meyer, Jonathan A Kropski, Dana Pe'er, Herbert B Schiller, Purushothama Rao Tata, Joachim L Schultze, Sarah A Teichmann, Alexander V Misharin, Martijn C Nawijn, Malte Daniel Luecken, Fabian Joachim Theis
An integrated cell atlas of the lung in health and disease. Nature medicine (2023)
Karin Hrovatin, Amir Ali Moinfar, Alejandro Tejada Lapuerta, Luke Zappia, Benjamin J Lengerich, Manolis Kellis, Fabian Joachim Theis
Integrating single-cell RNA-seq datasets with substantial batch effects. bioRxiv : the preprint server for biology (2023)
Larsen Vornholz, Sophie E Isay, Zsuzsanna Kurgyis, Daniel C Strobl, Patricia Loll, Mohammed H Mosa, Malte Daniel Luecken, Michael Sterr, Heiko Lickert, Christof Winter, Florian R Greten, Henner F Farin, Fabian Joachim Theis, Juergen Ruland
Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy. Science advances 9 (11) (2023)
Amit Frishberg, Neta Milman, Ayelet Alpert, Hannah Spitzer, Ben Asani, Johannes B Schiefelbein, Evgeny Bakin, Karen Regev-Berman, Siegfried G Priglinger, Joachim L Schultze, Fabian Joachim Theis, Shai S Shen-Orr
Reconstructing disease dynamics for mechanistic insights and clinical benefit. Nature communications 14 (1) (2023)
Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo de Donno, Leon Hetzel, Yuge Ji, Ignacio L Ibarra, Sanjay R Srivatsan, Mohsen Naghipourfar, Riza M Daza, Beth Martin, Jay Shendure, José L McFaline-Figueroa, Pierre Boyeau, F Alexander Wolf, Nafissa Yakubova, Stephan Günnemann, Cole Trapnell, David Lopez-Paz, Fabian Joachim Theis
Predicting cellular responses to complex perturbations in high-throughput screens. Molecular systems biology (2023)
Felix Fischer, David S Fischer, Evan Biederstedt, Alexandra-Chloé Villani, Fabian Joachim Theis
Scaling cross-tissue single-cell annotation models. bioRxiv : the preprint server for biology (2023)
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, null null, Bonnie Berger, Dana Pe'er, Aviv Regev, Sarah A Teichmann, Francesca Finotello, F Alexander Wolf, Nir Yosef, Oliver Stegle, Fabian Joachim Theis
The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature biotechnology (2023)
Sebastian Schmidt, Constantin Stautner, Duc Tung Vu, Alexander Heinz, Martin Regensburger, Özge Karayel, Dietrich Trümbach, Anna Artati, Sabine Kaltenhäuser, Mohamed Zakaria Nassef, Sina Hembach, Letyfee Steinert, Beate Winner, Juergen Winkler, Martin Jastroch, Malte Daniel Luecken, Fabian Joachim Theis, Gil Gregor Westmeyer, Jerzy Adamski, Matthias Mann, Karsten Hiller, Florian Giesert, Daniela Maria Vogt Weisenhorn, Wolfgang Wurst
A reversible state of hypometabolism in a human cellular model of sporadic Parkinson's disease. Nature communications 14 (1) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Hannah Spitzer, Scott Berry, Mark W Donoghoe, Lucas Pelkmans, Fabian Joachim Theis
Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps. Nature methods (2023)
Seddik Hammad, Christoph Ogris, Amnah Othman, Pia Erdoesi, Wolfgang Schmidt-Heck, Ina Biermayer, Barbara Helm, Yan Gao, Weronika Piorońska, Christian H Holland, Lorenza A D'Alessandro, Carolina de la Torre, Carsten Sticht, Sherin Al Aoua, Fabian Joachim Theis, Heike Bantel, Matthias P Ebert, Ursula Klingmüller, Jan G Hengstler, Steven Dooley, Nikola S Mueller
Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation. Cell death & disease 14 (7) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-Zadeh, Carlos Talavera-López, Alexander V Misharin, Fabian Joachim Theis
Biologically informed deep learning to query gene programs in single-cell atlases. Nature cell biology 25 (2) (2023)
Adam Gayoso, Romain Lopez, Galen Xing, Pierre Boyeau, Valeh Valiollah Pour Amiri, Justin Hong, Katherine Wu, Michael Jayasuriya, Edouard Mehlman, Maxime Langevin, Yining Liu, Jules Samaran, Gabriel Misrachi, Achille Nazaret, Oscar Clivio, Chenling A Xu, Tal Ashuach, Mariano Gabitto, Mohammad Lotfollahi, Valentine Svensson, Eduardo da Veiga Beltrame, Vitalii Kleshchevnikov, Carlos Talavera-López, Lior Pachter, Fabian Joachim Theis, Aaron Streets, Michael I Jordan, Jeffrey Regier, Nir Yosef
A Python library for probabilistic analysis of single-cell omics data. Nature biotechnology 40 (2) (2022)
Sebastian Schmidt, Malte Daniel Luecken, Dietrich Trümbach, Sina Hembach, Kristina M Niedermeier, Nicole Wenck, Klaus Pflügler, Constantin Stautner, Anika Böttcher, Heiko Lickert, Ciro Ramírez-Suástegui, Ruhel Ahmad, Michael J Ziller, Julia C Fitzgerald, Viktoria Ruf, Wilma D J van de Berg, Allert J Jonker, Thomas Gasser, Beate Winner, Juergen Winkler, Daniela Maria Vogt Weisenhorn, Florian Giesert, Fabian Joachim Theis, Wolfgang Wurst
Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease. Nature communications 13 (1) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
David S Fischer, Anna C Schaar, Fabian Joachim Theis
Modeling intercellular communication in tissues using spatial graphs of cells. Nature biotechnology (2022)
Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B Hoerning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Sabrina Richter, David S Fischer, Oliver Raether, Melvin A Park, Florian Meier, Fabian Joachim Theis, Matthias Mann
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation. Molecular systems biology 18 (3) (2022)
Bob A Hersbach, David S Fischer, Giacomo Masserdotti, null Deeksha, Karolina Mojžišová, Thomas Waltzhöni, Diego Rodriguez-Terrones, Matthias Heinig, Fabian Joachim Theis, Magdalena Götz, Stefan H Stricker
Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Molecular systems biology 18 (9) (2022)
Jessica Giehrl-Schwab, Florian Giesert, Benedict Rauser, Chu-Lan Lao, Sina Hembach, Sandrine Lefort, Ignacio L Ibarra, Christina Koupourtidou, Malte Daniel Luecken, Dong-Jiunn Jeffery Truong, Judith Fischer-Sternjak, Giacomo Masserdotti, Nilima Prakash, Jovica Ninkovic, Sabine Maria Hölter, Daniela M Vogt Weisenhorn, Fabian Joachim Theis, Magdalena Götz, Wolfgang Wurst
Parkinson's disease motor symptoms rescue by CRISPRa-reprogramming astrocytes into GABAergic neurons. EMBO molecular medicine 14 (5) (2022)
Mostafa Bakhti, Aimée Bastidas-Ponce, Sophie Tritschler, Oliver Czarnecki, Marta Tarquis-Medina, Eva Nedvedova, Jessica Jaki, Stefanie J Willmann, Katharina Scheibner, Perla Cota, Ciro Salinno, Karsten Boldt, Nicola Horn, Marius Ueffing, Ingo Burtscher, Fabian Joachim Theis, Ünal Coskun, Heiko Lickert
Synaptotagmin-13 orchestrates pancreatic endocrine cell egression and islet morphogenesis. Nature communications 13 (1) (2022)
Giovanni Palla, Hannah Spitzer, Michal Klein, David S Fischer, Anna Christina Schaar, Louis Benedikt Kuemmerle, Sergei Rybakov, Ignacio L Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, Fabian Joachim Theis
Squidpy: a scalable framework for spatial omics analysis. Nature methods 19 (2) (2022)
Alessandro Zambusi, Klara Tereza Novoselc, Saskia Hutten, Sofia Kalpazidou, Christina Koupourtidou, Rico Schieweck, Sven Aschenbroich, Lara Silva, Ayse Seda Yazgili, Frauke van Bebber, Bettina Schmid, Gabriel Möller, Clara Tritscher, Christian Stigloher, Claire Delbridge, Swetlana Sirko, Zeynep Irem Günes, Sabine Liebscher, Jürgen Schlegel, Hananeh Aliee, Fabian Joachim Theis, Silke Meiners, Michael Kiebler, Dorothee Dormann, Jovica Ninkovic
TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury. Nature neuroscience 25 (12) (2022)
Svenja Offer, Elena Hartner, Sebastiano Di Bucchianico, Christoph Bisig, Stefanie Bauer, Jana Pantzke, Elias J Zimmermann, Xin Cao, Stefanie Binder, Evelyn Kuhn, Anja Huber, Seongho Jeong, Uwe Käfer, Patrick Martens, Arūnas Meščeriakovas, Jan Bendl, Ramona Brejcha, Angela Buchholz, Daniella Gat, Thorsten Hohaus, Narges Rastak, Gert Jakobi, Markus Kalberer, Tamara Kanashova, Yue Hu, Christoph Ogris, Annalisa Marsico, Fabian Joachim Theis, Michal Pardo, Thomas Gröger, Sebastian Oeder, Jürgen Orasche, Andreas Paul, Till Ziehm, Zhi-Hui Zhang, Thomas Adam, Olli Sippula, Martin Sklorz, Jürgen Schnelle-Kreis, Hendryk Czech, Astrid Kiendler-Scharr, Yinon Rudich, Ralf Zimmermann
Effect of Atmospheric Aging on Soot Particle Toxicity in Lung Cell Models at the Air-Liquid Interface: Differential Toxicological Impacts of Biogenic and Anthropogenic Secondary Organic Aerosols (SOAs). Environmental health perspectives 130 (2) (2022)
Margaret E Magaletta, Macrina Lobo, Eric M Kernfeld, Hananeh Aliee, Jack D Huey, Teagan J Parsons, Fabian Joachim Theis, René Maehr
Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development. Nature communications 13 (1) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
Daniel Reichart, Eric Lars-Helge Lindberg, Henrike Maatz, Antonio M A Miranda, Anissa Viveiros, Nikolay Shvetsov, Anna Gaertner, Emily R Nadelmann, Michael Lee, Kazumasa Kanemaru, Jorge Ruiz-Orera, Viktoria Strohmenger, Daniel M DeLaughter, Giannino Patone, Hao Zhang, Andrew Woehler, Christoph Lippert, Yuri Kim, Eleonora Adami, Joshua M Gorham, Sam N Barnett, Kemar J Brown, Rachel J Buchan, Rasheda A Chowdhury, Chrystalla Constantinou, James Cranley, Leanne E Felkin, Henrik Fox, Ahla Ghauri, Jan F Gummert, Masatoshi Kanda, Ruoyan Li, Lukas Mach, Barbara McDonough, Sara Samari, Farnoush Shahriaran, Clarence Yapp, Caroline Stanasiuk, Pantazis I Theotokis, Fabian Joachim Theis, Antoon van den Bogaerdt, Hiroko Wakimoto, James Simon Ware, Catherine L Worth, Paul J R Barton, Young-Ae Lee, Sarah A Teichmann, Andreas Brodehl, Michela Noseda, Gavin Y Oudit, Matthias Heinig, Jonathan G Seidman, Norbert Hübner, Christine E Seidman
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies. Science (New York, N.Y.) 377 (6606) (2022)
Konstantin Lutz, Andrea Musumeci, Christopher Sie, Ezgi Dursun, Elena Winheim, Johannes Bagnoli, Christoph Ziegenhain, Lisa Rausch, Volker Bergen, Malte Daniel Luecken, Robert A J Oostendorp, Barbara U Schraml, Fabian Joachim Theis, Wolfgang Enard, Thomas Korn, Anne B Krug
Ly6D + Siglec-H + precursors contribute to conventional dendritic cells via a Zbtb46 + Ly6D + intermediary stage. Nature communications 13 (1) (2022)
Laura Stirm, Peter Huypens, Steffen Sass, Richa Batra, Louise Fritsche, Sara Brucker, Harald Abele, Anita M Hennige, Fabian Joachim Theis, Johannes Beckers, Martin Hrabě de Angelis, Andreas Fritsche, Hans-Ulrich Häring, Harald Staiger
Author Correction: Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin. Scientific reports 12 (1) (2022)
Bo Hu, Sara Lelek, Bastiaan Spanjaard, Hadil El-Sammak, Mariana Guedes Simões, Janita Mintcheva, Hananeh Aliee, Ronny Schäfer, Alexander M Meyer, Fabian Joachim Theis, Didier Y R Stainier, Daniela Panakova, Jan Philipp Junker
Origin and function of activated fibroblast states during zebrafish heart regeneration. Nature genetics 54 (8) (2022)
Giovanni Palla, David S Fischer, Aviv Regev, Fabian Joachim Theis
Spatial components of molecular tissue biology. Nature biotechnology 40 (3) (2022)
Volker Bergen, Ruslan A Soldatov, Peter V Kharchenko, Fabian Joachim Theis
RNA velocity-current challenges and future perspectives. Molecular systems biology 17 (8) (2022)
A Schäbitz, C Hillig, M Mubarak, M Jargosch, A Farnoud, E Scala, N Kurzen, A C Pilz, Nayanika Bhalla, J Thomas, M Stahle, Tilo Biedermann, Carsten B Schmidt-Weber, Fabian Joachim Theis, N Garzorz-Stark, K Eyerich, Michael Patrick Menden, Stefanie Eyerich
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases. Nature communications 13 (1) (2022)
Marius Lange, Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti, Heiko Lickert, Meshal Ansari, Janine Schniering, Herbert B Schiller, Dana Pe'er, Fabian Joachim Theis
CellRank for directed single-cell fate mapping. Nature methods 19 (2) (2022)

Fabian Joachim Theis.css-eqlu8i{font-size:small;padding-left:4px;} (F J Theis, Fabian Theis, Fabian J Theis, F Theis)

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Fabian Joachim Theis (F J Theis, Fabian Theis, Fabian J Theis, F Theis)