Xiang Chen

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 19

Top Venues

Nature communications

Nature cancer

Cancers

Genome biology

St. Jude Children's Research Hospital

Carnegie Mellon University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

St. Jude Children's Research Hospital

United States

Assistant member :: Computational Biology

Education History

Carnegie Mellon University

United States

PHD :: Biological Sciences

Carnegie Mellon University

United States

MSC :: Computational and Statistical Learning

Publications

Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Changde Cheng, Wenan Chen, Hongjian Jin, Xiang Chen
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell-Cell Communication. Cells 12 (15) (2023)
Andrew Jackson Murphy, Changde Cheng, Justin Williams, Timothy I Shaw, Emilia Modolo Pinto, Karissa M Dieseldorff Jones, Jack Brzezinski, Lindsay A Renfro, Brett Tornwall, Vicki Huff, Andrew L Hong, Elizabeth A Mullen, Brian D Crompton, Jeffrey S Dome, Conrad V Fernandez, James I Geller, Peter F Ehrlich, Heather L Mulder, Ninad Oak, Jamie Maciezsek, Carolyn M Jablonowski, Andrew M Fleming, Prahalathan Pichavaram, Christopher L Morton, John Easton, Kim E Nichols, Michael R Clay, Teresa Santiago, Jinghui Zhang, Jun J Yang, Gerard P Zambetti, Zhaoming Wang, Andrew M Davidoff, Xiang Chen
Genetic and epigenetic features of bilateral Wilms tumor predisposition in patients from the Children's Oncology Group AREN18B5-Q. Nature communications 14 (1) (2023)
Jie Fang, Shivendra Singh, Changde Cheng, Sivaraman Natarajan, Heather S Sheppard, Ahmed Abu-Zaid, Adam D Durbin, Ha Won Lee, Qiong Wu, Jacob A Steele, Jon Patrick Connelly, Hongjian Jin, Wenan Chen, Yiping Fan, Shondra M Pruett-Miller, Jerold E Rehg, Selene C Koo, Teresa Santiago, Joseph Emmons, Stefano Cairo, Ruoning Wang, Evan S Glazer, Andrew Jackson Murphy, Taosheng Chen, Andrew M Davidoff, Carolina Armengol, John Easton, Xiang Chen, Jun J Yang
Genome-wide mapping of cancer dependency genes and genetic modifiers of chemotherapy in high-risk hepatoblastoma. Nature communications 14 (1) (2023)
Sara Hetzel, Alexandra L Mattei, Helene Kretzmer, Chunxu Qu, Xiang Chen, Yiping Fan, Gang Wu, Kathryn G Roberts, Selina Luger, Mark Litzow, Jacob Rowe, Elisabeth Paietta, Wendy Stock, Elaine R Mardis, Richard K Wilson, James R Downing, Charles G Mullighan, Alexander Meissner
Acute lymphoblastic leukemia displays a distinct highly methylated genome. Nature cancer 3 (6) (2022)
Carolyn M Jablonowski, Hyea Jin Gil, Emilia Modolo Pinto, Prahalathan Pichavaram, Andrew M Fleming, Michael R Clay, Dongli Hu, Christopher L Morton, Shondra M Pruett-Miller, Baranda S Hansen, Xiang Chen, Karissa M Dieseldorff Jones, Yanling Liu, Xiaotu Ma, Jun J Yang, Andrew M Davidoff, Gerard P Zambetti, Andrew Jackson Murphy
TERT Expression in Wilms Tumor Is Regulated by Promoter Mutation or Hypermethylation, WT1, and N-MYC. Cancers 14 (7) (2022)
Shivendra Singh, Ahmed Abu-Zaid, Hongjian Jin, Jie Fang, Qiong Wu, Tingting Wang, Helin Feng, Waise Quarni, Ying Shao, Lily Maxham, Alireza Abdolvahabi, Mi-Kyung Yun, Sivaraja Vaithiyalingam, Haiyan Tan, John Bowling, Victoria Honnell, Brandon M Young, Yian Guo, Richa Bajpai, Shondra M Pruett-Miller, Gerard C Grosveld, Mark E Hatley, Bei-Si Xu, Yiping Fan, Gang Wu, Eleanor Y Chen, Taosheng Chen, Peter W Lewis, Zoran Rankovic, Yimei Li, Andrew Jackson Murphy, John Easton, Junmin Peng, Xiang Chen, Ruoning Wang, Stephen W White, Andrew M Davidoff, Jun J Yang
Targeting KDM4 for treating PAX3-FOXO1-driven alveolar rhabdomyosarcoma. Science translational medicine 14 (653) (2022)
Jacqueline L Norrie, Anjana Nityanandam, Karen Lai, Xiang Chen, Matthew Wilson, Elizabeth A Stewart, Lyra Griffiths, Hongjian Jin, Gang Wu, Brent A Orr, Quynh T Tran, Sariah Allen, Colleen Reilly, Xin Zhou, Jiakun Zhang, Kyle Newman, Dianna Johnson, Rachel C Brennan, Michael A Dyer
Retinoblastoma from human stem cell-derived retinal organoids. Nature communications 12 (1) (2021)
Justin Williams, Beisi Xu, Daniel Putnam, Andrew Thrasher, Chunliang Li, Jun Yang, Xiang Chen
MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors. Genome biology 22 (1) (2021)
Maged Zeineldin, Sara Federico, Xiang Chen, Yiping Fan, Bei-Si Xu, Elizabeth Stewart, Xin Zhou, Jongrye Jeon, Lyra Griffiths, Rosa Nguyen, Jackie Norrie, John Easton, Heather L Mulder, Donald Yergeau, Yanling Liu, Jianrong Wu, Collin Van Ryn, Arlene Naranjo, Michael D Hogarty, Marcin Mikołaj Kamiński, Marc Valentine, Shondra M Pruett-Miller, Alberto Pappo, Jinghui Zhang, Michael R Clay, Armita Bahrami, Peter Vogel, Seungjae Lee, Anang A Shelat, Jay F Sarthy, Michael P Meers, Rani E George, Elaine R Mardis, Richard K Wilson, Steven Henikoff, James R Downing, Michael A Dyer
MYCN amplification and ATRX mutations are incompatible in neuroblastoma. Nature communications 11 (1) (2020)
Andrew Jackson Murphy, Xiang Chen, Emilia Modolo Pinto, Justin S Williams, Michael R Clay, Stanley B Pounds, Xueyuan Cao, Lei Shi, Tong Lin, Geoffrey A Neale, Christopher L Morton, Mary A Woolard, Heather L Mulder, Hyea Jin Gil, Jerold E Rehg, Catherine A Billups, Matthew L Harlow, Jeffrey S Dome, Peter J Houghton, John Easton, Jinghui Zhang, Rani E George, Gerard P Zambetti, Andrew M Davidoff
Forty-five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor. Nature communications 10 (1) (2019)
Daniel K Putnam, Xiaotu Ma, Stephen V Rice, Yu Liu, Scott Newman, Jinghui Zhang, Xiang Chen
VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data and tumor purity. Scientific reports 9 (1) (2019)
Kai Yang, Daniel Bastardo Blanco, Xiang Chen, Pradyot Dash, Geoffrey A Neale, Celeste D Rosencrance, John Easton, Wenan Chen, Changde Cheng, Yogesh Dhungana, Anil Kc, Walid Awad, Xi-Zhi J Guo, Paul Glyndwr Thomas, Hongbo Chi
Metabolic signaling directs the reciprocal lineage decisions of αβ and γδ T cells. Science immunology 3 (25) (2019)
Michael C Rusch, Joy Nakitandwe, Sheila Shurtleff, Scott Newman, Zhaojie Zhang, Michael N Edmonson, Matthew Parker, Yuan-Nian Jiao, Xiaotu Ma, Yanling Liu, Jiali Gu, Michael F Walsh, Jared Becksfort, Andrew Thrasher, Yongjin Li, James McMurry, Erin Hedlund, Aman N Patel, John Easton, Donald Yergeau, Bhavin Vadodaria, Ruth G Tatevossian, Susana Raimondi, Dale Hedges, Xiang Chen, Kohei Hagiwara, Rose B McGee, Giles W Robinson, Jeffery M Klco, Tanja A Gruber, David W Ellison, James R Downing, Jinghui Zhang
Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome. Nature communications 9 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xiang Chen