Xiaohui Fan

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 45

Top Venues

Nature communications

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Journal of chemical information and modeling

Chinese medicine

Zhejiang University

Zhejiang University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Zhejiang University May 01 2016

China

Vice Dean :: College of Pharmaceutical Sciences

Zhejiang University Dec 01 2011

China

Professor/Qiushi Distinguished Professor :: College of Pharmaceutical Sciences

US Food and Drug Administration Dec 01 2013 - Oct 01 2014

United States

Visiting Professor :: Division of Bioinformatics and Biostatistics

Zhejiang University Dec 01 2007 - Nov 30 2011

China

Associate Professor :: College of Pharmaceutical Sciences

US Food and Drug Administration Nov 01 2005 - Aug 30 2008

United States

ORISE Postdoc :: Division of Bioinformatics and Biostatistics

Education History

Zhejiang University Sep 01 2000 - Jun 30 2005

China

PHD :: College of Pharmaceutical Sciences

Publications

Jinlu Zhang, Yin Fang, Xin Shao, Huajun Chen, Ningyu Zhang, Xiaohui Fan
The Future of Molecular Studies through the Lens of Large Language Models. Journal of chemical information and modeling 64 (3) (2024)
Jinlu Zhang, Yin Fang, Xin Shao, Huajun Chen, Ningyu Zhang, Xiaohui Fan
The Future of Molecular Studies through the Lens of Large Language Models. Journal of chemical information and modeling (2024)
Wenbo Guo, Xiaojing Xu, Yulin Xiao, Jiatian Zhang, Peiqiang Shen, Xiaoyan Lu, Xiaohui Fan
Salvianolic acid C attenuates cerebral ischemic injury through inhibiting neuroinflammation via the TLR4-TREM1-NF-κB pathway. Chinese medicine 19 (1) (2024)
Jinlu Zhang, Yin Fang, Xin Shao, Huajun Chen, Ningyu Zhang, Xiaohui Fan
The Future of Molecular Studies through the Lens of Large Language Models. Journal of chemical information and modeling 64 (3) (2024)
Jinlu Zhang, Yin Fang, Xin Shao, Huajun Chen, Ningyu Zhang, Xiaohui Fan
The Future of Molecular Studies through the Lens of Large Language Models. Journal of chemical information and modeling 64 (3) (2024)
Wenbo Guo, Xiaojing Xu, Yulin Xiao, Jiatian Zhang, Peiqiang Shen, Xiaoyan Lu, Xiaohui Fan
Salvianolic acid C attenuates cerebral ischemic injury through inhibiting neuroinflammation via the TLR4-TREM1-NF-κB pathway. Chinese medicine 19 (1) (2024)
Shuai Wang, Lijun Meng, Nan Xu, Huan Chen, Zhaofeng Xiao, Di Lu, Xiaohui Fan, Limin Xia, Jun Chen, Shushen Zhen, Qiang Wei, Xuyong Wei, Xiao Xu
Hepatocellular carcinoma-specific epigenetic checkpoints bidirectionally regulate the antitumor immunity of CD4 + T cells. Cellular & molecular immunology (2024)
Jinlu Zhang, Yin Fang, Xin Shao, Huajun Chen, Ningyu Zhang, Xiaohui Fan
The Future of Molecular Studies through the Lens of Large Language Models. Journal of chemical information and modeling 64 (3) (2024)
Jingyang Qian, Hudong Bao, Xin Shao, Yin Fang, Jie Liao, Zhuo Chen, Chengyu Li, Wenbo Guo, Yining Hu, Anyao Li, Yue Yao, Xiaohui Fan, Yiyu Cheng
Simulating multiple variability in spatially resolved transcriptomics with scCube. Nature communications 15 (1) (2024)
Jingyang Qian, Hudong Bao, Xin Shao, Yin Fang, Jie Liao, Zhuo Chen, Chengyu Li, Wenbo Guo, Yining Hu, Anyao Li, Yue Yao, Xiaohui Fan, Yiyu Cheng
Simulating multiple variability in spatially resolved transcriptomics with scCube. Nature communications 15 (1) (2024)
Wenbo Guo, Xiaojing Xu, Yulin Xiao, Jiatian Zhang, Peiqiang Shen, Xiaoyan Lu, Xiaohui Fan
Salvianolic acid C attenuates cerebral ischemic injury through inhibiting neuroinflammation via the TLR4-TREM1-NF-κB pathway. Chinese medicine 19 (1) (2024)
Guang-Lei Ma, Wan-Qiu Liu, Huawei Huang, Xin-Fu Yan, Wei Shen, Surawit Visitsatthawong, Kridsadakorn Prakinee, Hoa Tran, Xiaohui Fan, Yong-Gui Gao, Pimchai Chaiyen, Jian Li, Zhao-Xun Liang
An Enzymatic Oxidation Cascade Converts δ-Thiolactone Anthracene to Anthraquinone in the Biosynthesis of Anthraquinone-Fused Enediynes. JACS Au 4 (8) (2024)
Jinlu Zhang, Yin Fang, Xin Shao, Huajun Chen, Ningyu Zhang, Xiaohui Fan
The Future of Molecular Studies through the Lens of Large Language Models. Journal of chemical information and modeling 64 (3) (2024)
Jingyang Qian, Hudong Bao, Xin Shao, Yin Fang, Jie Liao, Zhuo Chen, Chengyu Li, Wenbo Guo, Yining Hu, Anyao Li, Yue Yao, Xiaohui Fan, Yiyu Cheng
Simulating multiple variability in spatially resolved transcriptomics with scCube. Nature communications 15 (1) (2024)
Jingyang Qian, Jie Liao, Ziqi Liu, Ying Chi, Yin Fang, Yanrong Zheng, Xin Shao, Bingqi Liu, Yongjin Cui, Wenbo Guo, Yining Hu, Hudong Bao, Penghui Yang, Qian Chen, Mingxiao Li, Bing Zhang, Xiaohui Fan
Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace. Nature communications 14 (1) (2023)
Jingyang Qian, Jie Liao, Ziqi Liu, Ying Chi, Yin Fang, Yanrong Zheng, Xin Shao, Bingqi Liu, Yongjin Cui, Wenbo Guo, Yining Hu, Hudong Bao, Penghui Yang, Qian Chen, Mingxiao Li, Bing Zhang, Xiaohui Fan
Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace. Nature communications 14 (1) (2023)
Jingyang Qian, Jie Liao, Ziqi Liu, Ying Chi, Yin Fang, Yanrong Zheng, Xin Shao, Bingqi Liu, Yongjin Cui, Wenbo Guo, Yining Hu, Hudong Bao, Penghui Yang, Qian Chen, Mingxiao Li, Bing Zhang, Xiaohui Fan
Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace. Nature communications 14 (1) (2023)
Ting Huang, Ruyi Lin, Yuanqin Su, Hao Sun, Xixi Zheng, Jinsong Zhang, Xiaoyan Lu, Baiqin Zhao, Xinchi Jiang, Lingling Huang, Ni Li, Jing Shi, Xiaohui Fan, Dong-Hang Xu, Tianyuan Zhang, Jian-Qing Gao
Efficient intervention for pulmonary fibrosis via mitochondrial transfer promoted by mitochondrial biogenesis. Nature communications 14 (1) (2023)
Jördis Klose, Lu Li, Melanie Pahl, Farina Bendt, Ulrike Hübenthal, Christian Jüngst, Patrick Petzsch, Astrid Schauss, Karl Köhrer, Ping Chung Leung, Chi Chiu Wang, Katharina Koch, Julia Tigges, Xiaohui Fan, Ellen Fritsche
Application of the adverse outcome pathway concept for investigating developmental neurotoxicity potential of Chinese herbal medicines by using human neural progenitor cells in vitro. Cell biology and toxicology (2022)
Junyun Cheng, Gaole Lin, Tianhao Wang, Yunzhu Wang, Wenbo Guo, Jie Liao, Penghui Yang, Jie Chen, Xin Shao, Xiaoyan Lu, Ling Zhu, Yi Wang, Xiaohui Fan
Massively Parallel CRISPR-Based Genetic Perturbation Screening at Single-Cell Resolution. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 10 (4) (2022)
Junyun Cheng, Gaole Lin, Tianhao Wang, Yunzhu Wang, Wenbo Guo, Jie Liao, Penghui Yang, Jie Chen, Xin Shao, Xiaoyan Lu, Ling Zhu, Yi Wang, Xiaohui Fan
Massively Parallel CRISPR-Based Genetic Perturbation Screening at Single-Cell Resolution. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2022)
Junyun Cheng, Gaole Lin, Tianhao Wang, Yunzhu Wang, Wenbo Guo, Jie Liao, Penghui Yang, Jie Chen, Xin Shao, Xiaoyan Lu, Ling Zhu, Yi Wang, Xiaohui Fan
Massively Parallel CRISPR-Based Genetic Perturbation Screening at Single-Cell Resolution. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 10 (4) (2022)
Junyun Cheng, Gaole Lin, Tianhao Wang, Yunzhu Wang, Wenbo Guo, Jie Liao, Penghui Yang, Jie Chen, Xin Shao, Xiaoyan Lu, Ling Zhu, Yi Wang, Xiaohui Fan
Massively Parallel CRISPR-Based Genetic Perturbation Screening at Single-Cell Resolution. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 10 (4) (2022)
Xin Shao, Haihong Yang, Xiang Zhuang, Jie Liao, Penghui Yang, Junyun Cheng, Xiaoyan Lu, Huajun Chen, Xiaohui Fan
scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network. Nucleic acids research 49 (21) (2022)
Jie Liao, Jingyang Qian, Yin Fang, Zhuo Chen, Xiang Zhuang, Ningyu Zhang, Xin Shao, Yining Hu, Penghui Yang, Junyun Cheng, Yang Hu, Lingqi Yu, Haihong Yang, Jinlu Zhang, Xiaoyan Lu, Li Shao, Dan Wu, Yue Gao, Huajun Chen, Xiaohui Fan
De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution. Nature communications 13 (1) (2022)
Kaiyu Jin, Shan Gao, Penghui Yang, Rongfang Guo, Dan Li, Yunsha Zhang, Xiaoyan Lu, Guanwei Fan, Xiaohui Fan
Single-Cell RNA Sequencing Reveals the Temporal Diversity and Dynamics of Cardiac Immunity after Myocardial Infarction. Small methods 6 (3) (2022)
Li Shao, Hong Zhao, Rongfang Guo, Jinlin Cheng, Xiaoyan Lu, Xiaohui Fan
Biopsy-based single-cell transcriptomics reveals MAIT cells as potential targets for controlling fibrosis-related liver inflammation due to chronic hepatitis-B infection. Clinical and translational medicine 12 (10) (2022)
Junyun Cheng, Gaole Lin, Tianhao Wang, Yunzhu Wang, Wenbo Guo, Jie Liao, Penghui Yang, Jie Chen, Xin Shao, Xiaoyan Lu, Ling Zhu, Yi Wang, Xiaohui Fan
Massively Parallel CRISPR-Based Genetic Perturbation Screening at Single-Cell Resolution. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 10 (4) (2022)
Haiping Jiang, Dingyi Yu, Penghui Yang, Rongfang Guo, Mei Kong, Yuan Gao, Xiongfei Yu, Xiaoyan Lu, Xiaohui Fan
Revealing the transcriptional heterogeneity of organ-specific metastasis in human gastric cancer using single-cell RNA Sequencing. Clinical and translational medicine 12 (2) (2022)
Xin Shao, Chengyu Li, Haihong Yang, Xiaoyan Lu, Jie Liao, Jingyang Qian, Wang Kai, Junyun Cheng, Penghui Yang, Huajun Chen, Xiao Xu, Xiaohui Fan
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk. Nature communications 13 (1) (2022)
Xiaoyan Lu, Junying Li, He Lou, Zeya Cao, Xiaohui Fan
Correction to "Genome-Wide DNA Methylation Alterations and Potential Risk Induced by Subacute and Subchronic Exposure to Food-Grade Nanosilica in Mice". ACS nano (2021)
Maryam Mazhar, Ahmad Ud Din, Hamid Ali, Guoqiang Yang, Wei Ren, Li Wang, Xiaohui Fan, Sijin Yang
Implication of ferroptosis in aging. Cell death discovery 7 (1) (2021)
Xin Shao, Jie Liao, Chengyu Li, Xiaoyan Lu, Junyun Cheng, Xiaohui Fan
CellTalkDB: a manually curated database of ligand-receptor interactions in humans and mice. Briefings in bioinformatics 22 (4) (2021)
Nils Förster, Joshua Butke, Hagen Eike Keßel, Farina Bendt, Melanie Pahl, Lu Li, Xiaohui Fan, Ping Chung Leung, Jördis Klose, Stefan Masjosthusmann, Ellen Fritsche, Axel Mosig
Reliable identification and quantification of neural cells in microscopic images of neurospheres. Cytometry. Part A : the journal of the International Society for Analytical Cytology (2021)
Junyun Cheng, Jie Liao, Xin Shao, Xiaoyan Lu, Xiaohui Fan
Multiplexing Methods for Simultaneous Large-Scale Transcriptomic Profiling of Samples at Single-Cell Resolution. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 8 (17) (2021)
Xiaoyan Lu, Junying Li, He Lou, Zeya Cao, Xiaohui Fan
Genome-Wide DNA Methylation Alterations and Potential Risk Induced by Subacute and Subchronic Exposure to Food-Grade Nanosilica in Mice. ACS nano 15 (5) (2021)
Li Shao, Jie Liao, Jingyang Qian, Wenbin Chen, Xiaohui Fan
MetaGeneBank: a standardized database to study deep sequenced metagenomic data from human fecal specimen. BMC microbiology 21 (1) (2021)
Zheng Wang, Ping Zhang, Qingqing Wang, Xueping Sheng, Jianbing Zhang, Xiaoyan Lu, Xiaohui Fan
Protective effects of Ginkgo Biloba Dropping Pills against liver ischemia/reperfusion injury in mice. Chinese medicine 15 (1) (2020)
Xin Shao, Xiaoyan Lu, Jie Liao, Huajun Chen, Xiaohui Fan
New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data. Protein & cell 11 (12) (2020)
Rui Xue, Jie Liao, Xin Shao, Ke Han, Jingbo Long, Li Shao, Ni Ai, Xiaohui Fan
Prediction of Adverse Drug Reactions by Combining Biomedical Tripartite Network and Graph Representation Model. Chemical research in toxicology 33 (1) (2019)
Xin Shao, Ning Lv, Jie Liao, Jinbo Long, Rui Xue, Ni Ai, Donghang Xu, Xiaohui Fan
Copy number variation is highly correlated with differential gene expression: a pan-cancer study. BMC medical genetics 20 (1) (2019)
Jie Zheng, Lingqi Yu, Wen Chen, Xiaoyan Lu, Xiaohui Fan
Circulating exosomal microRNAs reveal the mechanism of Fructus Meliae Toosendan-induced liver injury in mice. Scientific reports 8 (1) (2018)
Yi Wang, Yu Zhao, Wei Jiang, Xiaoping Zhao, Guanwei Fan, Han Zhang, Peiqiang Shen, Jiangmin He, Xiaohui Fan
iTRAQ-Based Proteomic Analysis Reveals Recovery of Impaired Mitochondrial Function in Ischemic Myocardium by Shenmai Formula. Journal of proteome research 17 (2) (2018)
Qian Chen, Ni Ai, Jie Liao, Xin Shao, Yufeng Liu, Xiaohui Fan
Revealing topics and their evolution in biomedical literature using Bio-DTM: a case study of ginseng. Chinese medicine 12 (2017)
Zhenzhong Yang, Qing Shao, Zhiwei Ge, Ni Ai, Xiaoping Zhao, Xiaohui Fan
A Bioactive Chemical Markers Based Strategy for Quality Assessment of Botanical Drugs: Xuesaitong Injection as a Case Study. Scientific reports 7 (1) (2017)
Xuexun Wen, Kedi Luo, Shun Xiao, Ni Ai, Shufang Wang, Xiaohui Fan
Qualitative analysis of chemical constituents in traditional Chinese medicine analogous formula cheng-Qi decoctions by liquid chromatography-mass spectrometry. Biomedical chromatography : BMC 30 (3) (2015)

Xiaohui Fan.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Xiaohui Fan