Xiaowo Wang

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 13

Top Topics

Dna Methylation

Top Venues

Bioinformatics (Oxford, England)

Briefings in bioinformatics

Genome research

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Xiaocheng Zeng, Zheng Wei, Qixiu Du, Jiaqi Li, Zhen Xie, Xiaowo Wang
Unveil cis-acting combinatorial mRNA motifs by interpreting deep neural network. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Haochen Wang, Qixiu Du, Ye Wang, Hanwen Xu, Zheng Wei, Xiaowo Wang
GPro: generative AI-empowered toolkit for promoter design. Bioinformatics (Oxford, England) 40 (3) (2024)
Xiaocheng Zeng, Zheng Wei, Qixiu Du, Jiaqi Li, Zhen Xie, Xiaowo Wang
Unveil cis-acting combinatorial mRNA motifs by interpreting deep neural network. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Xiaocheng Zeng, Zheng Wei, Qixiu Du, Jiaqi Li, Zhen Xie, Xiaowo Wang
Unveil cis-acting combinatorial mRNA motifs by interpreting deep neural network. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Haochen Wang, Qixiu Du, Ye Wang, Hanwen Xu, Zheng Wei, Xiaowo Wang
GPro: generative AI-empowered toolkit for promoter design. Bioinformatics (Oxford, England) 40 (3) (2024)
Zheng Wei, Kui Hua, Lei Wei, Shining Ma, Rui Jiang, Xuegong Zhang, Yanda Li, Wing Hung Wong, Xiaowo Wang
NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks. Proceedings of the National Academy of Sciences of the United States of America 120 (15) (2023)
Pengcheng Zhang, Haochen Wang, Hanwen Xu, Lei Wei, Liyang Liu, Zhirui Hu, Xiaowo Wang
Deep flanking sequence engineering for efficient promoter design using DeepSEED. Nature communications 14 (1) (2023)
Xianglin Zhang, Xiaowo Wang
MeConcord: a new metric to quantitatively characterize DNA methylation heterogeneity across reads and CpG sites. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA. Briefings in bioinformatics 23 (4) (2022)
Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads. Briefings in bioinformatics 22 (6) (2022)
Shengquan Chen, Qiao Liu, Xuejian Cui, Zhanying Feng, Chun-Quan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. Nucleic acids research 49 (W1) (2021)
Wei Zhang, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data. Briefings in bioinformatics (2021)
Xianglin Zhang, Xuehui Liu, Zhenhai Du, Lei Wei, Huan Fang, Qiongye Dong, Jing Niu, Yanda Li, Juntao Gao, Michael Q Zhang, Wei Xie, Xiaowo Wang
The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence. Genome research (2021)