Shengquan Chen

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 33

Top Topics

Gene Expression

Top Venues

Nature communications

Bioinformatics (Oxford, England)

Nature computational science

Bioinformatics advances

This page only lists publications with an associated author ORCID identifier.

Publications

Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
Publisher Correction: scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Qun Jiang, Shengquan Chen, Xiaoyang Chen, Rui Jiang
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism. Bioinformatics (Oxford, England) 40 (5) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Yichuan Cao, Xiamiao Zhao, Songming Tang, Qun Jiang, Sijie Li, Siyu Li, Shengquan Chen
scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders. Nature communications 15 (1) (2024)
Qun Jiang, Shengquan Chen, Xiaoyang Chen, Rui Jiang
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism. Bioinformatics (Oxford, England) 40 (5) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Xuejian Cui, Xiaoyang Chen, Zhen Li, Zijing Gao, Shengquan Chen, Rui Jiang
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. Nature computational science 4 (5) (2024)
Yichuan Cao, Xiamiao Zhao, Songming Tang, Qun Jiang, Sijie Li, Siyu Li, Shengquan Chen
scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders. Nature communications 15 (1) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Sijie Li, Yuxi Li, Yu Sun, Yaru Li, Xiaoyang Chen, Songming Tang, Shengquan Chen
EpiCarousel: memory- and time-efficient identification of metacells for atlas-level single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 40 (4) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Xuejian Cui, Xiaoyang Chen, Zhen Li, Zijing Gao, Shengquan Chen, Rui Jiang
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. Nature computational science (2024)
Xuejian Cui, Xiaoyang Chen, Zhen Li, Zijing Gao, Shengquan Chen, Rui Jiang
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. Nature computational science (2024)
Yichuan Cao, Xiamiao Zhao, Songming Tang, Qun Jiang, Sijie Li, Siyu Li, Shengquan Chen
scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders. Nature communications 15 (1) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Zijing Gao, Rui Jiang, Shengquan Chen
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions. Bioinformatics advances 4 (1) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
Publisher Correction: scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Zijing Gao, Rui Jiang, Shengquan Chen
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions. Bioinformatics advances 4 (1) (2024)
Sijie Li, Yuxi Li, Yu Sun, Yaru Li, Xiaoyang Chen, Songming Tang, Shengquan Chen
EpiCarousel: memory- and time-efficient identification of metacells for atlas-level single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 40 (4) (2024)
Zijing Gao, Rui Jiang, Shengquan Chen
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions. Bioinformatics advances 4 (1) (2024)
Songming Tang, Xuejian Cui, Rongxiang Wang, Sijie Li, Siyu Li, Xin Huang, Shengquan Chen
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data. Nature communications 15 (1) (2024)
Qun Jiang, Shengquan Chen, Xiaoyang Chen, Rui Jiang
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism. Bioinformatics (Oxford, England) 40 (5) (2024)
Yichuan Cao, Xiamiao Zhao, Songming Tang, Qun Jiang, Sijie Li, Siyu Li, Shengquan Chen
scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders. Nature communications 15 (1) (2024)
Sijie Li, Yuxi Li, Yu Sun, Yaru Li, Xiaoyang Chen, Songming Tang, Shengquan Chen
EpiCarousel: memory- and time-efficient identification of metacells for atlas-level single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 40 (4) (2024)
Rui Jiang, Zhen Li, Yuhang Jia, Siyu Li, Shengquan Chen
SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains. Cells 12 (4) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Rui Jiang, Zhen Li, Yuhang Jia, Siyu Li, Shengquan Chen
SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains. Cells 12 (4) (2023)
Rui Jiang, Zhen Li, Yuhang Jia, Siyu Li, Shengquan Chen
SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains. Cells 12 (4) (2023)
Shengquan Chen, Guanao Yan, Wenyu Zhang, Jinzhao Li, Rui Jiang, Zhixiang Lin
RA3 is a reference-guided approach for epigenetic characterization of single cells. Nature communications 12 (1) (2021)
Shengquan Chen, Qiao Liu, Xuejian Cui, Zhanying Feng, Chun-Quan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. Nucleic acids research 49 (W1) (2021)