Rui Jiang

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 28

Top Topics

Gene Expression

Top Venues

Bioinformatics (Oxford, England)

Journal of medical Internet research

Proceedings of the National Academy of Sciences of the United States of America

Nature computational science

This page only lists publications with an associated author ORCID identifier.

Publications

Qun Jiang, Shengquan Chen, Xiaoyang Chen, Rui Jiang
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism. Bioinformatics (Oxford, England) 40 (5) (2024)
Qun Jiang, Shengquan Chen, Xiaoyang Chen, Rui Jiang
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism. Bioinformatics (Oxford, England) 40 (5) (2024)
Haoxiang Gao, Kui Hua, Xinze Wu, Lei Wei, Sijie Chen, Qijin Yin, Rui Jiang, Xuegong Zhang
Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model. Communications biology 7 (1) (2024)
Haoxiang Gao, Kui Hua, Xinze Wu, Lei Wei, Sijie Chen, Qijin Yin, Rui Jiang, Xuegong Zhang
Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model. Communications biology 7 (1) (2024)
Xuejian Cui, Xiaoyang Chen, Zhen Li, Zijing Gao, Shengquan Chen, Rui Jiang
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. Nature computational science 4 (5) (2024)
Yan Pan, Zijing Gao, Xuejian Cui, Zhen Li, Rui Jiang
collectNET: a web server for integrated inference of cell-cell communication network. Database : the journal of biological databases and curation 2024 (2024)
Haoxiang Gao, Kui Hua, Xinze Wu, Lei Wei, Sijie Chen, Qijin Yin, Rui Jiang, Xuegong Zhang
Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model. Communications biology 7 (1) (2024)
Xuan Zou, Weijie He, Yu Huang, Yi Ouyang, Zhen Zhang, Yu Wu, Yongsheng Wu, Lili Feng, Sheng Wu, Mengqi Yang, Xuyan Chen, Yefeng Zheng, Rui Jiang, Ting Chen
AI-Driven Diagnostic Assistance in Medical Inquiry: Reinforcement Learning Algorithm Development and Validation. Journal of medical Internet research 26 (2024)
Xuejian Cui, Xiaoyang Chen, Zhen Li, Zijing Gao, Shengquan Chen, Rui Jiang
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. Nature computational science (2024)
Xuejian Cui, Xiaoyang Chen, Zhen Li, Zijing Gao, Shengquan Chen, Rui Jiang
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. Nature computational science (2024)
Xuan Zou, Weijie He, Yu Huang, Yi Ouyang, Zhen Zhang, Yu Wu, Yongsheng Wu, Lili Feng, Sheng Wu, Mengqi Yang, Xuyan Chen, Yefeng Zheng, Rui Jiang, Ting Chen
AI-Driven Diagnostic Assistance in Medical Inquiry: Reinforcement Learning Algorithm Development and Validation. Journal of medical Internet research 26 (2024)
Zijing Gao, Rui Jiang, Shengquan Chen
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions. Bioinformatics advances 4 (1) (2024)
Zijing Gao, Rui Jiang, Shengquan Chen
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions. Bioinformatics advances 4 (1) (2024)
Zijing Gao, Rui Jiang, Shengquan Chen
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions. Bioinformatics advances 4 (1) (2024)
Qun Jiang, Shengquan Chen, Xiaoyang Chen, Rui Jiang
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism. Bioinformatics (Oxford, England) 40 (5) (2024)
Zheng Wei, Kui Hua, Lei Wei, Shining Ma, Rui Jiang, Xuegong Zhang, Yanda Li, Wing Hung Wong, Xiaowo Wang
NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks. Proceedings of the National Academy of Sciences of the United States of America 120 (15) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Lin Lin Guo, Lin Ying Guo, Jiao Li, Yao Wen Gu, Jia Yang Wang, Ying Cui, Qing Qian, Ting Chen, Rui Jiang, Si Zheng
Characteristics and Admission Preferences of Pediatric Emergency Patients and Their Waiting Time Prediction Using Electronic Medical Record Data: Retrospective Comparative Analysis. Journal of medical Internet research 25 (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. Bioinformatics (Oxford, England) 39 (1) (2023)
Wanwen Zeng, Qiao Liu, Qijin Yin, Rui Jiang, Wing Hung Wong
HiChIPdb: a comprehensive database of HiChIP regulatory interactions. Nucleic acids research (2022)
Qijin Yin, Qiao Liu, Zhuoran Fu, Wanwen Zeng, Boheng Zhang, Xuegong Zhang, Rui Jiang, Hairong Lv
scGraph: a graph neural network-based approach to automatically identify cell types. Bioinformatics (Oxford, England) 38 (11) (2022)
Honglei Liu, Zhiqiang Zhang, Yan Xu, Ni Wang, Yanqun Huang, Zhenghan Yang, Rui Jiang, Hui Chen
Use of BERT (Bidirectional Encoder Representations from Transformers)-Based Deep Learning Method for Extracting Evidences in Chinese Radiology Reports: Development of a Computer-Aided Liver Cancer Diagnosis Framework. Journal of medical Internet research 23 (1) (2021)
Qiao Liu, Jiaze Xu, Rui Jiang, Wing Hung Wong
Density estimation using deep generative neural networks. Proceedings of the National Academy of Sciences of the United States of America 118 (15) (2021)
Sijie Chen, Yanting Luo, Haoxiang Gao, Fanhong Li, Jiaqi Li, Yixin Chen, Renke You, Hairong Lv, Kui Hua, Rui Jiang, Xuegong Zhang
Toward a unified information framework for cell atlas assembly. National science review 9 (3) (2021)
Shengquan Chen, Qiao Liu, Xuejian Cui, Zhanying Feng, Chun-Quan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. Nucleic acids research 49 (W1) (2021)
Wenran Li, Zhana Duren, Rui Jiang, Wing Hung Wong
A method for scoring the cell type-specific impacts of noncoding variants in personal genomes. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Huiru Zheng, Rui Jiang, Zhong-Ming Zhao
Integrated approach in systems biology. Computational and mathematical methods in medicine 2014 (2014)
Mengmeng Wu, Rui Jiang
Detecting epistatic interactions in metagenome-wide association studies by metaBOOST. BioMed research international 2014 (2014)