Xiaoyin Chen

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 26

Top Topics

Herpes Simplex Virus

Top Venues

Cold Spring Harbor perspectives in biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Xiaoyin Chen
Reimagining Cortical Connectivity by Deconstructing Its Molecular Logic into Building Blocks. Cold Spring Harbor perspectives in biology (2024)
Kaitlin M Stouffer, Alain Trouvé, Laurent Younes, Michael Kunst, Lydia Ng, Hongkui Zeng, Manjari Anant, Jean Fan, Yongsoo Kim, Xiaoyin Chen, Mara C P Rue, Michael I Miller
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections. Nature communications 15 (1) (2024)
Xiaoyin Chen, Stephan Fischer, Mara C P Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O Kanold, Jonathan M Werner, Anthony M Zador
Whole-cortex in situ sequencing reveals input-dependent area identity. Nature (2024)
Xiaoyin Chen, Stephan Fischer, Mara C P Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O Kanold, Jonathan M Werner, Anthony M Zador
Whole-cortex in situ sequencing reveals input-dependent area identity. Nature (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Xiaoyin Chen
Reimagining Cortical Connectivity by Deconstructing Its Molecular Logic into Building Blocks. Cold Spring Harbor perspectives in biology (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Xiaoyin Chen
Reimagining Cortical Connectivity by Deconstructing Its Molecular Logic into Building Blocks. Cold Spring Harbor perspectives in biology (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Xiaoyin Chen, Stephan Fischer, Mara C P Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O Kanold, Jonathan M Werner, Anthony M Zador
Whole-cortex in situ sequencing reveals input-dependent area identity. Nature (2024)
Kaitlin M Stouffer, Alain Trouvé, Laurent Younes, Michael Kunst, Lydia Ng, Hongkui Zeng, Manjari Anant, Jean Fan, Yongsoo Kim, Xiaoyin Chen, Mara C P Rue, Michael I Miller
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections. Nature communications 15 (1) (2024)
Xiaoyin Chen, Stephan Fischer, Mara C P Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O Kanold, Jonathan M Werner, Anthony M Zador
Whole-cortex in situ sequencing reveals input-dependent area identity. Nature (2024)
Kaitlin M Stouffer, Alain Trouvé, Laurent Younes, Michael Kunst, Lydia Ng, Hongkui Zeng, Manjari Anant, Jean Fan, Yongsoo Kim, Xiaoyin Chen, Mara C P Rue, Michael I Miller
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections. Nature communications 15 (1) (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. eLife 12 (2024)
Xiaoyin Chen, Stephan Fischer, Mara C P Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O Kanold, Jonathan M Werner, Anthony M Zador
Whole-cortex in situ sequencing reveals input-dependent area identity. Nature (2024)
Li Yuan, Xiaoyin Chen, Huiqing Zhan, Henry L Gilbert, Anthony M Zador
Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq. bioRxiv : the preprint server for biology (2023)
Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T J van Velthoven, Heather Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Bosiljka Tasic, Ian R Wickersham, Xiaoyin Chen
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing. bioRxiv : the preprint server for biology (2023)
Li Yuan, Xiaoyin Chen, Huiqing Zhan, Henry L Gilbert, Anthony M Zador
Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq. bioRxiv : the preprint server for biology (2023)
Rodrigo Muñoz-Castañeda, Brian Zingg, Katherine S Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N Foster, Anan Li, Arun Narasimhan, Karla E Hirokawa, Bing-Xing Huo, Samik Bannerjee, Laura Korobkova, Chris Sin Park, Young-Gyun Park, Michael S Bienkowski, Uree Chon, Diek W Wheeler, Xiangning Li, Yun Wang, Maitham Naeemi, Peng Xie, Lijuan Liu, Kathleen Kelly, Xu An, Sarojini M Attili, Ian Bowman, Anastasiia Bludova, Ali Cetin, Liya Ding, Rhonda Drewes, Florence D'Orazi, Corey Elowsky, Stephan Fischer, William Galbavy, Lei Gao, Jesse Gillis, Peter A Groblewski, Lin Gou, Joel D Hahn, Joshua T Hatfield, Houri Hintiryan, Junxiang Jason Huang, Hideki Kondo, Xiuli Kuang, Philip Lesnar, Xu Li, Yaoyao Li, Mengkuan Lin, Darrick Lo, Judith Mizrachi, Stephanie Mok, Philip R Nicovich, Ramesh Palaniswamy, Jason Palmer, Xiaoli Qi, Elise Shen, Yu-Chi Sun, Huizhong Whit Tao, Wayne Wakemen, Yimin Wang, Shenqin Yao, Jing Yuan, Huiqing Zhan, Muye Zhu, Lydia Ng, Li I Zhang, Byung Kook Lim, Michael J Hawrylycz, Hui Gong, James C Gee, Yongsoo Kim, Kwanghun Chung, Xiangdong William Yang, Hanchuan Peng, Qingming Luo, Partha P Mitra, Anthony M Zador, Hongkui Zeng, Giorgio A Ascoli, Z Josh Huang, Pavel Osten, Julie A Harris, Hong-Wei Dong
Cellular anatomy of the mouse primary motor cortex. Nature 598 (7879) (2021)
Shuonan Chen, Jackson Loper, Xiaoyin Chen, Alex Vaughan, Anthony M Zador, Liam Paninski
BARcode DEmixing through Non-negative Spatial Regression (BarDensr). PLoS computational biology 17 (3) (2021)
Yu-Chi Sun, Xiaoyin Chen, Stephan Fischer, Shaina Lu, Huiqing Zhan, Jesse Gillis, Anthony M Zador
Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections. Nature neuroscience 24 (6) (2021)
Xiaoyin Chen, Margarete Diaz Cuadros, Martin Chalfie
Identification of nonviable genes affecting touch sensitivity in Caenorhabditis elegans using neuronally enhanced feeding RNA interference. G3 (Bethesda, Md.) 5 (3) (2015)