Xin Deng

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Venues

Applied and environmental microbiology

Nature communications

Nucleic acids research

mBio

University of Chicago

Kansas State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Chicago Feb 01 2010 - Jan 31 2015

United States

Postdoctoral Scholar

Education History

Kansas State University Aug 01 2004 - Dec 01 2009

United States

PHD

China Agricultural University Sep 01 2001 - Jul 01 2004

China

MSC

China Agricultural University Sep 01 1997 - Jul 01 2001

China

BSC

Publications

Lu Tan, Zhihao Guo, Yanwen Shao, Lianwei Ye, Miaomiao Wang, Xin Deng, Sheng Chen, Runsheng Li
Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing. Nucleic acids research 52 (15) (2024)
Lu Tan, Zhihao Guo, Yanwen Shao, Lianwei Ye, Miaomiao Wang, Xin Deng, Sheng Chen, Runsheng Li
Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing. Nucleic acids research 52 (15) (2024)
Mingsen Li, Huizhen Guo, Bofeng Wang, Zhuo Han, Siqi Wu, Jiafeng Liu, Huaxing Huang, Jin Zhu, Fengjiao An, Zesong Lin, Kunlun Mo, Jieying Tan, Chunqiao Liu, Li Wang, Xin Deng, Guigang Li, Jianping Ji, Hong Ouyang
The single-cell transcriptomic atlas and RORA-mediated 3D epigenomic remodeling in driving corneal epithelial differentiation. Nature communications 15 (1) (2024)
Lu Tan, Zhihao Guo, Yanwen Shao, Lianwei Ye, Miaomiao Wang, Xin Deng, Sheng Chen, Runsheng Li
Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing. Nucleic acids research (2024)
Mingsen Li, Huizhen Guo, Bofeng Wang, Zhuo Han, Siqi Wu, Jiafeng Liu, Huaxing Huang, Jin Zhu, Fengjiao An, Zesong Lin, Kunlun Mo, Jieying Tan, Chunqiao Liu, Li Wang, Xin Deng, Guigang Li, Jianping Ji, Hong Ouyang
The single-cell transcriptomic atlas and RORA-mediated 3D epigenomic remodeling in driving corneal epithelial differentiation. Nature communications 15 (1) (2024)
Lu Tan, Zhihao Guo, Yanwen Shao, Lianwei Ye, Miaomiao Wang, Xin Deng, Sheng Chen, Runsheng Li
Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing. Nucleic acids research 52 (15) (2024)
Mingsen Li, Huizhen Guo, Bofeng Wang, Zhuo Han, Siqi Wu, Jiafeng Liu, Huaxing Huang, Jin Zhu, Fengjiao An, Zesong Lin, Kunlun Mo, Jieying Tan, Chunqiao Liu, Li Wang, Xin Deng, Guigang Li, Jianping Ji, Hong Ouyang
The single-cell transcriptomic atlas and RORA-mediated 3D epigenomic remodeling in driving corneal epithelial differentiation. Nature communications 15 (1) (2024)
Kun Li, Chancan Liao, Tingting Wang, Liyang Song, Xin Deng, Wei Yan, Rongxiang Fang, Yantao Jia, Xiaoyan Tang
Type III Secretion System Repressor RhpR Induces GrlP, a Glycine-Rich Outer Membrane Lipoprotein with Functions in Regulating the Periplasmic Space and Pleiotropic Responses. Applied and environmental microbiology 89 (1) (2023)
Kun Li, Chancan Liao, Tingting Wang, Liyang Song, Xin Deng, Wei Yan, Rongxiang Fang, Yantao Jia, Xiaoyan Tang
Type III Secretion System Repressor RhpR Induces GrlP, a Glycine-Rich Outer Membrane Lipoprotein with Functions in Regulating the Periplasmic Space and Pleiotropic Responses. Applied and environmental microbiology (2023)
Kun Li, Chancan Liao, Tingting Wang, Liyang Song, Xin Deng, Wei Yan, Rongxiang Fang, Yantao Jia, Xiaoyan Tang
Type III Secretion System Repressor RhpR Induces GrlP, a Glycine-Rich Outer Membrane Lipoprotein with Functions in Regulating the Periplasmic Space and Pleiotropic Responses. Applied and environmental microbiology 89 (1) (2023)
Kun Li, Chancan Liao, Tingting Wang, Liyang Song, Xin Deng, Wei Yan, Rongxiang Fang, Yantao Jia, Xiaoyan Tang
Type III Secretion System Repressor RhpR Induces GrlP, a Glycine-Rich Outer Membrane Lipoprotein with Functions in Regulating the Periplasmic Space and Pleiotropic Responses. Applied and environmental microbiology 89 (1) (2023)
Kun Li, Chancan Liao, Tingting Wang, Liyang Song, Xin Deng, Wei Yan, Rongxiang Fang, Yantao Jia, Xiaoyan Tang
Type III Secretion System Repressor RhpR Induces GrlP, a Glycine-Rich Outer Membrane Lipoprotein with Functions in Regulating the Periplasmic Space and Pleiotropic Responses. Applied and environmental microbiology 89 (1) (2023)
Yingxue Li, Wei Xu, Yutian Ren, Hung-Chi Cheung, Panpan Huang, Guneet Kaur, Chih-Jung Kuo, Sean P McDonough, Susan L Fubini, Stephen M Lipkin, Xin Deng, Yung-Fu Chang, Linfeng Huang
Plakoglobin and High-Mobility Group Box 1 Mediate Intestinal Epithelial Cell Apoptosis Induced by Clostridioides difficile TcdB. mBio 13 (5) (2022)
Zeqiong Cai, Fan Yang, Xiaolong Shao, Zhuo Yue, Zhenpeng Li, Yuqin Song, Xiaolei Pan, Yongxin Jin, Zhihui Cheng, Un-Hwan Ha, Jie Feng, Liang Yang, Xin Deng, Weihui Wu, Fang Bai
ECF Sigma Factor HxuI Is Critical for In Vivo Fitness of Pseudomonas aeruginosa during Infection. Microbiology spectrum 10 (1) (2022)
Yue Sun, Xiaolong Shao, Yingchao Zhang, Liangliang Han, Jiadai Huang, Yingpeng Xie, Jingui Liu, Xin Deng
Maintenance of tRNA and elongation factors supports T3SS proteins translational elongations in pathogenic bacteria during nutrient starvation. Cell & bioscience 12 (1) (2022)
Canfeng Hua, Jiadai Huang, Tingting Wang, Yue Sun, Jingui Liu, Linfeng Huang, Xin Deng
Bacterial Transcription Factors Bind to Coding Regions and Regulate Internal Cryptic Promoters. mBio 13 (5) (2022)
Yingpeng Xie, Yiqing Ding, Xiaolong Shao, Chunyan Yao, Jingwei Li, Jingui Liu, Xin Deng
Pseudomonas syringae senses polyphenols via phosphorelay crosstalk to inhibit virulence. EMBO reports 22 (12) (2021)
Qiao Cao, Nana Yang, Yanhui Wang, Chenchen Xu, Xue Zhang, Ke Fan, Feifei Chen, Haihua Liang, Yingchao Zhang, Xin Deng, You-Jun Feng, Cai-Guang Yang, Mingshan Jiang, Taeok Bae, Lefu Lan
Mutation-induced remodeling of the BfmRS two-component system in Pseudomonas aeruginosa clinical isolates. Science signaling 13 (656) (2020)
Ligang Fan, Tingting Wang, Canfeng Hua, Wenju Sun, Xiaoyu Li, Lucas Grunwald, Jingui Liu, Nan Wu, Xiaolong Shao, Yimeng Yin, Jian Yan, Xin Deng
A compendium of DNA-binding specificities of transcription factors in Pseudomonas syringae. Nature communications 11 (1) (2020)
Canfeng Hua, Tingting Wang, Xiaolong Shao, Yingpeng Xie, Hao Huang, Jingui Liu, Weitong Zhang, Yingchao Zhang, Yiqing Ding, Lin Jiang, Xin Wang, Xin Deng
Pseudomonas syringae dual-function protein Lon switches between virulence and metabolism by acting as both DNA-binding transcriptional regulator and protease in different environments. Environmental microbiology 22 (7) (2020)
Yingchao Zhang, Chuan-Min Zhou, Qinqin Pu, Qun Wu, Shirui Tan, Xiaolong Shao, Weitong Zhang, Yingpeng Xie, Rongpeng Li, Xue-Jie Yu, Rui Wang, Liang Zhang, Min Wu, Xin Deng
Correction for Zhang et al., "Pseudomonas aeruginosa Regulatory Protein AnvM Controls Pathogenicity in Anaerobic Environments and Impacts Host Defense". mBio 11 (5) (2020)
Yingpeng Xie, Xiaolong Shao, Xin Deng
Regulation of type III secretion system in Pseudomonas syringae. Environmental microbiology 21 (12) (2019)
Jingru Wang, Xiaolong Shao, Yingchao Zhang, Yanan Zhu, Pan Yang, Jian Yuan, Tingting Wang, Chunyan Yin, Wei Wang, Sheng Chen, Haihua Liang, Xin Deng
HrpS Is a Global Regulator on Type III Secretion System (T3SS) and Non-T3SS Genes in Pseudomonas savastanoi pv. phaseolicola. Molecular plant-microbe interactions : MPMI 31 (12) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xin Deng