Yatish Turakhia

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 18

Top Venues

bioRxiv : the preprint server for biology

Nature genetics

Virus evolution

Systematic biology

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Stanford University

United States

PHD :: Electrical Engineering

Publications

Adriano de Bernardi Schneider, Michelle Su, Angie S Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A Wadford, Áine Niamh O'Toole, Emily Scher, Marc D Perry, Yatish Turakhia, Nicola de Maio, Scott Hughes, Russ Corbett-Detig
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method. Virus evolution 10 (1) (2024)
Anshu Gupta, Siavash Mirarab, Yatish Turakhia
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES. bioRxiv : the preprint server for biology (2024)
Anshu Gupta, Siavash Mirarab, Yatish Turakhia
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES. bioRxiv : the preprint server for biology (2024)
Angie S Hinrichs, Cheng Ye, Yatish Turakhia, Russell B Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic. Nature genetics 56 (1) (2024)
Anshu Gupta, Siavash Mirarab, Yatish Turakhia
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES. bioRxiv : the preprint server for biology (2024)
Adriano de Bernardi Schneider, Michelle Su, Angie S Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A Wadford, Áine Niamh O'Toole, Emily Scher, Marc D Perry, Yatish Turakhia, Nicola de Maio, Scott Hughes, Russ Corbett-Detig
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method. Virus evolution 10 (1) (2024)
Angie S Hinrichs, Cheng Ye, Yatish Turakhia, Russell B Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic. Nature genetics 56 (1) (2024)
Anshu Gupta, Siavash Mirarab, Yatish Turakhia
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES. bioRxiv : the preprint server for biology (2024)
Anshu Gupta, Siavash Mirarab, Yatish Turakhia
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES. bioRxiv : the preprint server for biology (2024)
Heidi I Chen, Yatish Turakhia, Gill Bejerano, David M Kingsley
Whole-genome comparisons identify repeated regulatory changes underlying convergent appendage evolution in diverse fish lineages. bioRxiv : the preprint server for biology (2023)
Alexander M Kramer, Bryan Thornlow, Cheng Ye, Nicola de Maio, Jakob McBroome, Angie S Hinrichs, Robert Lanfear, Yatish Turakhia, Russell Corbett-Detig
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations. Systematic biology (2023)
Heidi I Chen, Yatish Turakhia, Gill Bejerano, David M Kingsley
Whole-genome comparisons identify repeated regulatory changes underlying convergent appendage evolution in diverse fish lineages. bioRxiv : the preprint server for biology (2023)
Angie S Hinrichs, Cheng Ye, Yatish Turakhia, Russell B Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic. Nature genetics (2023)
Heidi I Chen, Yatish Turakhia, Gill Bejerano, David M Kingsley
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages. Molecular biology and evolution 40 (9) (2023)
Cheng Ye, Bryan Thornlow, Angie S Hinrichs, Alexander Kramer, Cade Mirchandani, Devika Torvi, Robert Lanfear, Russell Corbett-Detig, Yatish Turakhia
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. Bioinformatics (Oxford, England) 38 (15) (2022)
Jakob McBroome, Jennifer Martin, Adriano de Bernardi Schneider, Yatish Turakhia, Russell Corbett-Detig
Identifying SARS-CoV-2 regional introductions and transmission clusters in real time. Virus evolution 8 (1) (2022)
Yatish Turakhia, Bryan Thornlow, Angie S Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, Russell B Corbett-Detig
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic. Nature genetics 53 (6) (2021)
Yatish Turakhia, Nicola de Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R Walker, Angie S Hinrichs, Jason D Fernandes, Rui Borges, Greg Slodkowicz, Lukas Weilguny, David Haussler, Nick Goldman, Russell B Corbett-Detig
Stability of SARS-CoV-2 phylogenies. PLoS genetics 16 (11) (2020)

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Publication Activity (10 Years)

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Yatish Turakhia