Angie S Hinrichs (Angie Hinrichs)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 17

Top Venues

Nature microbiology

Nature genetics

Nucleic acids research

Virus evolution

University of California Santa Cruz

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Santa Cruz

United States

Bioinformatics Software Developer :: Genomics Institute

Publications

Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Adriano de Bernardi Schneider, Michelle Su, Angie S Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A Wadford, Áine Niamh O'Toole, Emily Scher, Marc D Perry, Yatish Turakhia, Nicola de Maio, Scott Hughes, Russ Corbett-Detig
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method. Virus evolution 10 (1) (2024)
Angie S Hinrichs, Cheng Ye, Yatish Turakhia, Russell B Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic. Nature genetics 56 (1) (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Adriano de Bernardi Schneider, Michelle Su, Angie S Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A Wadford, Áine Niamh O'Toole, Emily Scher, Marc D Perry, Yatish Turakhia, Nicola de Maio, Scott Hughes, Russ Corbett-Detig
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method. Virus evolution 10 (1) (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology (2024)
Angie S Hinrichs, Cheng Ye, Yatish Turakhia, Russell B Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic. Nature genetics 56 (1) (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Brian J Raney, Galt P Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Melissa S Cline, Mark E Diekhans, Clayton Fischer, Jairo Navarro Gonzalez, Glenn Hickey, Angie S Hinrichs, Robert M Kuhn, Laurence D Rowe, Christopher M Lee, Philippe Le Mercier, Karen H Miga, Luis R Nassar, Parisa Nejad, Benedict Paten, Gerardo Perez, Daniel Schmelter, Matthew L Speir, Brittney D Wick, Ann S Zweig, David Haussler, W James Kent, Maximilian Haeussler
The UCSC Genome Browser database: 2024 update. Nucleic acids research (2023)
Alexander M Kramer, Bryan Thornlow, Cheng Ye, Nicola de Maio, Jakob McBroome, Angie S Hinrichs, Robert Lanfear, Yatish Turakhia, Russell Corbett-Detig
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations. Systematic biology (2023)
Angie S Hinrichs, Cheng Ye, Yatish Turakhia, Russell B Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic. Nature genetics (2023)
Luis R Nassar, Galt P Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark E Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S Hinrichs, Laurence D Rowe, Christopher M Lee, Pranav Muthuraman, Beagan Nguy, Tiana Pereira, Parisa Nejad, Gerardo Perez, Brian J Raney, Daniel Schmelter, Matthew L Speir, Brittney D Wick, Ann S Zweig, David Haussler, Robert M Kuhn, Maximilian Haeussler, W James Kent
The UCSC Genome Browser database: 2023 update. Nucleic acids research (2022)
Cheng Ye, Bryan Thornlow, Angie S Hinrichs, Alexander Kramer, Cade Mirchandani, Devika Torvi, Robert Lanfear, Russell Corbett-Detig, Yatish Turakhia
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. Bioinformatics (Oxford, England) 38 (15) (2022)
Yatish Turakhia, Bryan Thornlow, Angie S Hinrichs, Jakob McBroome, Nicolas Ayala, Cheng Ye, Kyle Smith, Nicola De Maio, David Haussler, Robert Lanfear, Russell B Corbett-Detig
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape. Nature 609 (7929) (2022)
Laurence D Rowe, Galt P Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark E Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S Hinrichs, Christopher M Lee, Pranav Muthuraman, Luis R Nassar, Beagan Nguy, Tiana Pereira, Gerardo Perez, Brian J Raney, Kate R Rosenbloom, Daniel Schmelter, Matthew L Speir, Brittney D Wick, Ann S Zweig, David Haussler, Robert M Kuhn, Maximilian Haeussler, W James Kent
The UCSC Genome Browser database: 2022 update. Nucleic acids research (2021)
Yatish Turakhia, Nicola de Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R Walker, Angie S Hinrichs, Jason D Fernandes, Rui Borges, Greg Slodkowicz, Lukas Weilguny, David Haussler, Nick Goldman, Russell B Corbett-Detig
Stability of SARS-CoV-2 phylogenies. PLoS genetics 16 (11) (2020)

Angie S Hinrichs.css-eqlu8i{font-size:small;padding-left:4px;} (Angie Hinrichs)

Publication Activity (10 Years)

Top Topics

Top Venues

Angie S Hinrichs (Angie Hinrichs)